Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6qul
Q-score: 0.556
Scaiola A, Leibundgut M, Boehringer D, Caspers P, Bur D, Locher HH, Rueedi G, Ritz D
Sci Rep (2019) 9 pp. 5634-5634 [ Pubmed: 30948752 DOI: doi:10.1038/s41598-019-42155-4 ]
- 50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
- Adenosine-5'-monophosphate (347 Da, Ligand)
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
- Structure of a bacterial 50s ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid (Complex from Escherichia coli)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
- 5s rrna (38 kDa, RNA from Escherichia coli)
- N-formylmethionine (177 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- 23s rrna (906 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
- Cadazolid (585 Da, Ligand)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli)
- P-site fmet-trna(fmet) (1 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
TnaC-stalled ribosome complex with the titin I27 domain folding close to the ribosomal exit tunnel
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6i0y
Q-score: 0.305
Tian P, Steward A, Kudva R, Su T, Shilling PJ, Nickson AA, Hollins JJ, Beckmann R, von Heijne G, Clarke J, Best RB
PNAS (2018) 115 pp. E11284-E11293 [ Pubmed: 30413621 DOI: doi:10.1073/pnas.1810523115 ]
- Proline trna (24 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- Tryptophanase operon leader peptide (2 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
- Tryptophanase operon leader peptide (Complex from Escherichia coli)
- 50s ribosomal protein l9 (5 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l7/l12 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
- Water (18 Da, Ligand)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
- Tryptophan (204 Da, Ligand)
- 5s ribosomal rna (38 kDa, RNA from Escherichia coli)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
- 23s ribosomal rna (941 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
- Titin nascent chain (Complex from Homo sapiens)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l15 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l10 (17 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l17 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
- Ribosome (Complex from Escherichia coli)
- 50s ribosomal protein l23 (10 kDa, Protein from Escherichia coli)
- Tnac-stalled ribosome complex with the titin i27 domain folding close to the ribosomal exit tunnel (Complex)
- 50s ribosomal protein l27 (8 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- Titin (9 kDa, Protein from Homo sapiens)
Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit
Resolution: 3.42 Å
EM Method: Single-particle
Fitted PDBs: 6dzp
Q-score: 0.464
Li Y, Sharma MR, Koripella RK, Yang Y, Kaushal PS, Lin Q, Wade JT, Gray TA, Derbyshire KM, Agrawal RK, Ojha AK
PNAS (2018) 115 pp. 8191-8196 [ Pubmed: 30038002 DOI: doi:10.1073/pnas.1804555115 ]
- 50s ribosomal protein l4 (22 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l13 (16 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l21 (10 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 23s rrna (1 MDa, RNA from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l27 (9 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l2 (30 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l30 (7 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l23 (10 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l10 (18 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l36 (4 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l34 (5 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- Mycobacterium smegmatis c(minus) 70s ribosome with mpy (Complex from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l29 (8 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l18 (13 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l20 (14 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l16 (15 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l17 (21 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l35 (7 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 5s rrna (38 kDa, RNA from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l3 (23 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l6 (19 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l24 (11 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l31 (9 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l14 (13 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l11 (15 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l19 (12 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l28 (8 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- Uncharacterized protein (2 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l25 (22 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l22 (16 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l15 (15 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l9 (15 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l33 2 (6 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l5 (21 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l32 (6 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
M. smegmatis P/P state 50S ribosomal subunit
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 5zet
Q-score: 0.422
Mishra S, Ahmed T, Tyagi A, Shi J, Bhushan S
Sci Rep (2018) 8 pp. 13587-13587 [ DOI: doi:10.1038/s41598-018-31850-3 Pubmed: 30206241 ]
- 50s ribosomal protein l6 (19 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l24 (11 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l22 (16 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l13 (16 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l27 (9 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l17 (21 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l23 (11 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l10 (18 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l3 (23 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l20 (14 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l29 (8 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l28 (6 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l32 (6 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l30 (7 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l34 (5 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l35 (7 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l9 (15 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l25 (22 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l19 (12 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l14 (13 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l33 1 (6 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l16 (15 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- Translating-state 50s ribosome structure from m.smegmatis (Complex from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l21 (11 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l18 (13 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l11 (15 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- P-trnafmet (38 kDa, RNA from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l15 (15 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l5 (21 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 23s rrna (1 MDa, RNA from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l4 (22 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l31 (8 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l2 (30 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l36 (4 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- Uncharacterized protein bl37 (2 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50S ribosomal subunit assembly intermediate state 5
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6gbz
Q-score: 0.339
Nikolay R, Hilal T, Qin B, Mielke T, Burger J, Loerke J, Textoris-Taube K, Nierhaus KH, Spahn CMT
Mol Cell (2018) 70 pp. 881-893.e3 [ DOI: doi:10.1016/j.molcel.2018.05.003 Pubmed: 29883607 ]
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l27 (8 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l23 (10 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l33 (5 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l9 (5 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli K-12)
- 5s ribosomal rna (38 kDa, RNA from Escherichia coli K-12)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l15 (14 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal subunit assembly intermediate state 5 (1 MDa, Complex from Escherichia coli)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli K-12)
- 23s ribosomal rna (941 kDa, RNA from Escherichia coli K-12)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l17 (13 kDa, Protein from Escherichia coli K-12)
50S ribosomal subunit assembly intermediate state 4
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6gc0
Q-score: 0.341
Nikolay R, Hilal T, Qin B, Mielke T, Burger J, Loerke J, Textoris-Taube K, Nierhaus KH, Spahn CMT
Mol Cell (2018) 70 pp. 881-893.e3 [ DOI: doi:10.1016/j.molcel.2018.05.003 Pubmed: 29883607 ]
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l27 (8 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l9 (5 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- 5s ribosomal rna (38 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l15 (14 kDa, Protein from Escherichia coli)
- 23s ribosomal rna (941 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l17 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l23 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l33 (5 kDa, Protein from Escherichia coli)
- 50s ribosomal subunit assembly intermediate state 4 (1 MDa, Complex from Escherichia coli)
50S ribosomal subunit assembly intermediate - 50S rec*
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6gc8
Q-score: 0.305
Nikolay R, Hilal T, Qin B, Mielke T, Burger J, Loerke J, Textoris-Taube K, Nierhaus KH, Spahn CMT
Mol Cell (2018) 70 pp. 881-893.e3 [ DOI: doi:10.1016/j.molcel.2018.05.003 Pubmed: 29883607 ]
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l27 (8 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l23 (10 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l33 (5 kDa, Protein from Escherichia coli K-12)
- 5s ribosomal rna (38 kDa, RNA from Escherichia coli K-12)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli K-12)
- Water (18 Da, Ligand)
- 50s ribosomal protein l9 (5 kDa, Protein from Escherichia coli K-12)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal subunit assembly intermediate - 50s rec* (1 MDa, Complex from Escherichia coli K-12)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli K-12)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l15 (14 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli K-12)
- 23s ribosomal rna (941 kDa, RNA from Escherichia coli K-12)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l17 (13 kDa, Protein from Escherichia coli K-12)
Large subunit of Mycobacterium smegmatis
Resolution: 3.08 Å
EM Method: Single-particle
Fitted PDBs: 5xym
Q-score: 0.518
Li Z, Ge X, Zhang Y, Zheng L, Sanyal S, Gao N
Protein Cell (2018) 9 pp. 384-388 [ Pubmed: 28875450 DOI: doi:10.1007/s13238-017-0456-9 ]
- 50s ribosomal protein l27 (9 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 23s rna (1 MDa, RNA from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l2 (30 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l30 (7 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l28 (6 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l5 (21 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- Large subunit of mycobacterium smegmatis ribosome (Complex from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l36 (4 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l18 (13 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l13 (16 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l34 (5 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l29 (8 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l35 (7 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l20 (14 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l16 (15 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l17 (21 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l3 (23 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l6 (19 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l21 (11 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l24 (11 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l14 (13 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l22 (16 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l23 (11 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l19 (12 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 5s rna (38 kDa, RNA from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l4 (22 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l25 (22 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l15 (15 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l33 2 (6 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l9 (15 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l32 (6 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- Uncharacterized protein bl37 (2 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
Cryo-EM reconstruction of the large subunit of the Mycobacterium smegmatis ribosome
Resolution: 3.18 Å
EM Method: Single-particle
Fitted PDBs: 5o60
Q-score: 0.487
Hentschel J, Burnside C, Mignot I, Leibundgut M, Boehringer D, Ban N
Cell Rep (2017) 20 pp. 149-160 [ DOI: doi:10.1016/j.celrep.2017.06.029 Pubmed: 28683309 ]
- 50s ribosomal protein l6 (19 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l24 (11 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l22 (16 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l13 (16 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l28 (6 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l27 (9 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l10 (18 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein bl37 (2 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l20 (14 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l29 (8 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l17 (21 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l34 (5 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- Zinc ion (65 Da, Ligand)
- 5s rrna (38 kDa, RNA from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l9 (15 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l25 (22 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l30 (7 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l19 (12 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l3 (23 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l14 (13 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- Trna cca-end acetylated (phe) (894 Da, RNA from Mycobacterium smegmatis str. MC2 155)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l33 1 (6 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l35 (7 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l16 (15 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l21 (11 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l11 (15 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- Phenylalanine (165 Da, Ligand from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l15 (15 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l18 (13 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l5 (21 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 23s rrna (1 MDa, RNA from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l32 (6 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l4 (22 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l31 (8 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s large ribosomal subunit (Complex from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l2 (30 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l36 (4 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l23 (11 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
Structure of the 50S large subunit of chloroplast ribosome from spinach
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 5x8t
Q-score: 0.451
Nucleic Acids Res (2017) 45 pp. 8581-8595 [ Pubmed: 28582576 DOI: doi:10.1093/nar/gkx499 ]
- 50s ribosomal protein l2, chloroplastic (29 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l31 (10 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l22, chloroplastic (23 kDa, Protein from Spinacia oleracea)
- Protein l28 (9 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l21, chloroplastic (22 kDa, Protein from Spinacia oleracea)
- Protein cl38 (12 kDa, Protein from Spinacia oleracea)
- 5s rrna (39 kDa, RNA from Spinacia oleracea)
- 50s ribosomal protein l13, chloroplastic (22 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l34, chloroplastic (6 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l35, chloroplastic (8 kDa, Protein from Spinacia oleracea)
- Protein l17 (13 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l14, chloroplastic (13 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l20, chloroplastic (15 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l36, chloroplastic (4 kDa, Protein from Spinacia oleracea)
- 50s large subunit of chloroplast ribosome from spinach (1 MDa, Complex from Spinacia oleracea)
- 50s ribosomal protein l16, chloroplastic (15 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l4, chloroplastic (27 kDa, Protein from Spinacia oleracea)
- Protein l27 (15 kDa, Protein from Spinacia oleracea)
- 4.8s rrna (34 kDa, RNA from Spinacia oleracea)
- Protein l18 (13 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l32, chloroplastic (6 kDa, Protein from Spinacia oleracea)
- Protein cl37 (15 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l33, chloroplastic (7 kDa, Protein from Spinacia oleracea)
- Protein l6 (20 kDa, Protein from Spinacia oleracea)
- 23s rrna (911 kDa, RNA from Spinacia oleracea)
- Protein l15 (20 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l5, chloroplastic (24 kDa, Protein from Spinacia oleracea)
- Protein l9 (17 kDa, Protein from Spinacia oleracea)
- Protein l29 (12 kDa, Protein from Spinacia oleracea)
- Protein l3 (24 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l23, chloroplastic (13 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l19, chloroplastic (17 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l24, chloroplastic (16 kDa, Protein from Spinacia oleracea)