Structure of bacterial ribosome determined by cryoEM at 100 keV
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 8pva
Q-score: 0.287
McMullan G, Naydenova K, Mihaylov D, Yamashita K, Peet MJ, Wilson H, Dickerson JL, Chen S, Cannone G, Lee Y, Hutchings KA, Gittins O, Sobhy MA, Wells T, El-Gomati MM, Dalby J, Meffert M, Schulze-Briese C, Henderson R, Russo CJ
PNAS (2023) 120 pp. e2312905120-e2312905120 [ DOI: doi:10.1073/pnas.2312905120 Pubmed: 38011573 ]
- Small ribosomal subunit protein us8 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli)
- E. coli 70s ribosome (Complex from Escherichia coli)
- Large ribosomal subunit protein ul4 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us15 (10 kDa, Protein from Escherichia coli)
- 23s rrna (941 kDa, RNA from Escherichia coli)
- Large ribosomal subunit protein ul2 (29 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul6 (18 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us9 (14 kDa, Protein from Escherichia coli)
- 16s rrna (499 kDa, RNA from Escherichia coli)
- Mrna (9 kDa, RNA from Escherichia coli)
- Small ribosomal subunit protein us5 (17 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
- E-site trna (589 Da, RNA from Escherichia coli)
- Small ribosomal subunit protein us11 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein bs16 (9 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl9 (15 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul3 (22 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul16 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
- P-site trna-fmet (24 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us19 (10 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us2 (26 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein bs20 (9 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul13 (16 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein bs21 (8 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us10 (11 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein bs6, fully modified isoform (15 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us4 (23 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl31a (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
- 5s rrna (38 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
- A-site trna-val (24 kDa, RNA from Escherichia coli)
- Small ribosomal subunit protein us13 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us17 (9 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein bs18 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us3 (26 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul5 (20 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us12 (13 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us14 (11 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us7 (20 kDa, Protein from Escherichia coli)
Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome
Resolution: 4.62 Å
EM Method: Single-particle
Fitted PDBs: 8hl4
Q-score: 0.279
Wang YH, Dai H, Zhang L, Wu Y, Wang J, Wang C, Xu CH, Hou H, Yang B, Zhu Y, Zhang X, Zhou J
Nucleic Acids Res (2023) 51 pp. 8909-8924 [ Pubmed: 37604686 DOI: doi:10.1093/nar/gkad661 ]
- 50s ribosomal protein l30e (10 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s9 (15 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l23 (9 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l30 (17 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l22 (17 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l37ae (7 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 23s rrna (3000-mer) (980 kDa, RNA from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s10 (11 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s19 (13 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l6 (20 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Conserved protein (8 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s4 (19 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s3 (22 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s27ae (6 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 16s rrna (1493-mer) (487 kDa, RNA from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l19e (17 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l47a (9 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Sulfolobus acidocaldarius ribosome small sbunit (Complex from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l29 (7 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l24e (6 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l39e (5 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s5 (22 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s12 (15 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l40e (6 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l15 (16 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l24 (14 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s15 (17 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l13 (15 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s8e (14 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Phe-phe-phe-phe-phe-phe (901 Da, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l37e (6 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s27e (6 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s28e (7 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l31e (8 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l10e (18 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Mrna (5'-r(p*up*up*up*up*up*up*up*up*u)-3') (2 kDa, RNA from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l5 (19 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Unknown (103 Da, Ligand)
- 5s rrna (122-mer) (39 kDa, RNA from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l15e (20 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s7 (21 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Trna (76-mer) (24 kDa, RNA from Sulfolobus acidocaldarius DSM 639)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- 30s ribosomal protein s17e (7 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s17 (12 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l14e (9 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l18ae (8 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Duf2280 domain-containing protein (11 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l1 (24 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s14 type z (6 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l3 (38 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l34e (8 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l18 (21 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l2 (24 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s2 (22 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s13 (17 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s4e (27 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l4 (27 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s11 (13 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l14 (14 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l18e (12 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l44e (10 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l21e (11 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s24e (10 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s19e (17 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Elongation factor 2 (81 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l7ae (13 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l32e (14 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s6e (11 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s3ae (21 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 8hl2
Q-score: 0.315
Wang YH, Dai H, Zhang L, Wu Y, Wang J, Wang C, Xu CH, Hou H, Yang B, Zhu Y, Zhang X, Zhou J
Nucleic Acids Res (2023) 51 pp. 8909-8924 [ Pubmed: 37604686 DOI: doi:10.1093/nar/gkad661 ]
- 50s ribosomal protein l30e (10 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s9 (15 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l23 (9 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l30 (17 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l22 (17 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l37ae (7 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 23s rrna (3000-mer) (980 kDa, RNA from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s10 (11 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s19 (13 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l6 (20 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Conserved protein (8 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s3 (22 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s27ae (6 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s4 (19 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 16s rrna (1493-mer) (487 kDa, RNA from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l19e (17 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l47a (9 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Sulfolobus acidocaldarius ribosome small sbunit (Complex from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l29 (7 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l24e (6 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l39e (5 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s5 (22 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s12 (15 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l40e (6 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l15 (16 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l24 (14 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s15 (17 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l13 (15 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s8e (14 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Phe-phe-phe-phe-phe-phe (901 Da, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l37e (6 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s28e (7 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s27e (6 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l31e (8 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l10e (18 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l5 (19 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Unknown (103 Da, Ligand)
- 5s rrna (122-mer) (39 kDa, RNA from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l15e (20 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s7 (21 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Trna (76-mer) (24 kDa, RNA from Sulfolobus acidocaldarius DSM 639)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- 30s ribosomal protein s17e (7 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s17 (12 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Mrna (5'-r(p*up*up*up*up*up*up*up*up*up*up*up*up*u)-3') (3 kDa, RNA from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l14e (9 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l18ae (8 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Duf2280 domain-containing protein (11 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l1 (24 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s14 type z (6 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l3 (38 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l34e (8 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l18 (21 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l2 (24 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s13 (17 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s2 (22 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s4e (27 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s8 (14 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l4 (27 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s11 (13 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l14 (14 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l18e (12 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l44e (10 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Elongation factor 2 (81 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l21e (11 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s19e (17 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s24e (10 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l7ae (13 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l32e (14 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s6e (11 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s3ae (21 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome
Resolution: 4.8 Å
EM Method: Single-particle
Fitted PDBs: 8hl3
Q-score: 0.28
Wang YH, Dai H, Zhang L, Wu Y, Wang J, Wang C, Xu CH, Hou H, Yang B, Zhu Y, Zhang X, Zhou J
Nucleic Acids Res (2023) 51 pp. 8909-8924 [ DOI: doi:10.1093/nar/gkad661 Pubmed: 37604686 ]
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- 50s ribosomal protein l29 (7 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l1 (24 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l7ae (13 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s28e (7 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s3ae (21 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 16s rrna (1493-mer) (487 kDa, RNA from Sulfolobus acidocaldarius DSM 639)
- Duf2280 domain-containing protein (11 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s6e (11 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s27ae (6 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s24e (10 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 23s rrna (3000-mer) (980 kDa, RNA from Sulfolobus acidocaldarius DSM 639)
- Phe-phe-phe-phe-phe-phe (901 Da, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l5 (19 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s19e (17 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l30e (10 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Elongation factor 2 (81 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l3 (38 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l4 (27 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l18 (21 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 5s rrna (122-mer) (39 kDa, RNA from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l23 (9 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s4 (19 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s8e (14 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l44e (10 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Mrna (5'-r(p*up*up*up*up*up*up*up*up*up*up*up*up*u)-3') (3 kDa, RNA from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l2 (24 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l6 (20 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s9 (15 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l30 (17 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s12 (15 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l47a (9 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l40e (6 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Sulfolobus acidocaldarius ribosome small sbunit (Complex from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l37e (6 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s5 (22 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l34e (8 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s19 (13 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l18ae (8 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l31e (8 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Conserved protein (8 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s27e (6 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l13 (15 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l18e (12 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s17e (7 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l32e (14 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s15 (17 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l15e (20 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l39e (5 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s17 (12 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l21e (11 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l24e (6 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l37ae (7 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l14 (14 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s3 (22 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Trna (76-mer) (24 kDa, RNA from Sulfolobus acidocaldarius DSM 639)
- Unknown (103 Da, Ligand)
- 30s ribosomal protein s2 (22 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l10e (18 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l24 (14 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l14e (9 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l15 (16 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s7 (21 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s8 (14 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s4e (27 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s10 (11 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s13 (17 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s14 type z (6 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l19e (17 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l22 (17 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s11 (13 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome
Resolution: 4.45 Å
EM Method: Single-particle
Fitted PDBs: 8hky
Q-score: 0.27
Wang YH, Dai H, Zhang L, Wu Y, Wang J, Wang C, Xu CH, Hou H, Yang B, Zhu Y, Zhang X, Zhou J
Nucleic Acids Res (2023) 51 pp. 8909-8924 [ Pubmed: 37604686 DOI: doi:10.1093/nar/gkad661 ]
- 50s ribosomal protein l30e (10 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s9 (15 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l23 (9 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l30 (17 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l22 (17 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l37ae (7 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s10 (11 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s19 (13 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l6 (20 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Conserved protein (8 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s4 (19 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s3 (22 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s27ae (6 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l47a (9 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l19e (17 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l29 (7 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l24e (6 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l39e (5 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s5 (22 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s12 (15 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l40e (6 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l15 (16 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l24 (14 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s15 (17 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l13 (15 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s8e (14 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Phe-phe-phe-phe-phe-phe (901 Da, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l37e (6 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s27e (6 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s28e (7 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l31e (8 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l10e (18 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Mrna (5'-r(p*up*up*up*up*up*up*up*up*u)-3') (2 kDa, RNA from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l5 (19 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Unknown (103 Da, Ligand)
- 50s ribosomal protein l15e (20 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 5s rrna (122-mer) (39 kDa, RNA from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s7 (21 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Trna (76-mer) (24 kDa, RNA from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s17e (7 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s17 (12 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 23s rrna (980 kDa, RNA from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l18ae (8 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l14e (9 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Duf2280 domain-containing protein (11 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l1 (24 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s14 type z (6 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l3 (38 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l34e (8 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l18 (21 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l2 (24 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s2 (22 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s8 (14 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s4e (27 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s13 (17 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l4 (27 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s11 (13 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l14 (14 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l18e (12 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l44e (10 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l21e (11 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s24e (10 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s19e (17 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l7ae (13 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l32e (14 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 16s rrna (487 kDa, RNA from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s6e (11 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s3ae (21 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Sulfolobus acidocaldarius ribosome (Complex from Sulfolobus acidocaldarius DSM 639)
Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome
Resolution: 4.78 Å
EM Method: Single-particle
Fitted PDBs: 8hkz
Q-score: 0.253
Wang YH, Dai H, Zhang L, Wu Y, Wang J, Wang C, Xu CH, Hou H, Yang B, Zhu Y, Zhang X, Zhou J
Nucleic Acids Res (2023) 51 pp. 8909-8924 [ DOI: doi:10.1093/nar/gkad661 Pubmed: 37604686 ]
- 23s rrna (2996-mer) (980 kDa, RNA from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l29 (7 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l1 (24 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l7ae (13 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s28e (7 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s3ae (21 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Mrna (5'-r(p*up*up*up*up*up*up*up*up*u)-3') (2 kDa, RNA from Sulfolobus acidocaldarius DSM 639)
- Duf2280 domain-containing protein (11 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s6e (11 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s27ae (6 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s24e (10 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 16s rrna (1493-mer) (487 kDa, RNA from Sulfolobus acidocaldarius DSM 639)
- Phe-phe-phe-phe-phe-phe (901 Da, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l5 (19 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s19e (17 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l30e (10 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l18 (21 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l3 (38 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l4 (27 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l23 (9 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s4 (19 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s8e (14 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l44e (10 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l2 (24 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l6 (20 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s9 (15 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l30 (17 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s12 (15 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l47a (9 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l40e (6 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s5 (22 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l37e (6 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s19 (13 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l34e (8 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l18ae (8 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Large ribosomal subunit protein ul15 (16 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l31e (8 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Conserved protein (8 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s27e (6 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l13 (15 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l18e (12 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s17e (7 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l32e (14 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s15 (17 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l15e (20 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l39e (5 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s17 (12 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l21e (11 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l24e (6 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 5s rrna (122-mer) (39 kDa, RNA from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l14 (14 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l37ae (7 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s3 (22 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Trna (76-mer) (24 kDa, RNA from Sulfolobus acidocaldarius DSM 639)
- Unknown (103 Da, Ligand)
- 30s ribosomal protein s2 (22 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l10e (18 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l24 (14 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l14e (9 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s7 (21 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s10 (11 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s8 (14 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s4e (27 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s13 (17 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Sulfolobus acidocaldarius ribosome (Complex from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s14 type z (6 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l19e (17 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l22 (17 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 30s ribosomal protein s11 (13 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome
Resolution: 4.94 Å
EM Method: Single-particle
Fitted PDBs: 8hkv
Q-score: 0.324
Wang YH, Dai H, Zhang L, Wu Y, Wang J, Wang C, Xu CH, Hou H, Yang B, Zhu Y, Zhang X, Zhou J
Nucleic Acids Res (2023) 51 pp. 8909-8924 [ Pubmed: 37604686 DOI: doi:10.1093/nar/gkad661 ]
- Sulfolobus acidocaldarius ribosome small sbunit (Complex from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l39e (5 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l15 (16 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l24 (14 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l44e (10 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l18 (21 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l6 (20 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 5s rrna (122-mer) (39 kDa, RNA from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l15e (20 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l7ae (13 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l13 (15 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l18ae (8 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l30e (10 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l37ae (7 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l47a (9 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l37e (6 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Conserved protein (8 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 23s rrna (2996-mer) (980 kDa, RNA from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l22 (17 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l34e (8 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l14 (14 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l2 (24 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l3 (38 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l40e (6 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l24e (6 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l30 (17 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l18e (12 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l32e (14 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l29 (7 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Duf2280 domain-containing protein (11 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l19e (17 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l10e (18 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l14e (9 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l5 (19 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l23 (9 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l31e (8 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l21e (11 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- 50s ribosomal protein l4 (27 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 7y41
Q-score: 0.422
Int J Biol Macromol (2023) 253 pp. 126876-126876 [ DOI: doi:10.1016/j.ijbiomac.2023.126876 Pubmed: 37709237 ]
- 50s ribosomal protein l5 (21 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l31 (8 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal subunit bl37 (2 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l21 (11 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l17 (21 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l25 (22 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 5s ribosomal rna (38 kDa, RNA from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l29 (8 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l32 (6 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l33 1 (6 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l11 (15 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l36 (4 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l6 (19 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l4 (22 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l14 (13 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Mycobacterium smegmatis 50s ribosomal subunit from log phase of growth (1 MDa, Complex from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l20 (14 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l13 (16 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l28 (6 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l27 (9 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l30 (7 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l18 (13 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l35 (7 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l3 (23 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l34 (5 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l2 (30 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l22 (16 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l23 (11 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l24 (11 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l15 (15 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l10 (18 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Magnesium ion (24 Da, Ligand)
- 23s ribosomal rna (1 MDa, RNA from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l19 (12 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l16 (15 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
Cryo-EM captures early ribosome assembly in action
Resolution: 4.19 Å
EM Method: Single-particle
Fitted PDBs: 8c91
Q-score: 0.276
Qin B, Lauer SM, Balke A, Vieira-Vieira CH, Burger J, Mielke T, Selbach M, Scheerer P, Spahn CMT, Nikolay R
Nat Commun (2023) 14 pp. 898-898 [ DOI: doi:10.1038/s41467-023-36607-9 Pubmed: 36797249 ]
- 50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
- Large ribosomal subunit precursor c_l2 (Complex from Escherichia coli)
- 50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- 23s rrna (941 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
Cryo-EM captures early ribosome assembly in action
Resolution: 4.17 Å
EM Method: Single-particle
Fitted PDBs: 8c93
Q-score: 0.272
Qin B, Lauer SM, Balke A, Vieira-Vieira CH, Burger J, Mielke T, Selbach M, Scheerer P, Spahn CMT, Nikolay R
Nat Commun (2023) 14 pp. 898-898 [ Pubmed: 36797249 DOI: doi:10.1038/s41467-023-36607-9 ]
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
- 23s rrna (941 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli)
- Large ribosomal subunit precursor c- (Complex from Escherichia coli)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)