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sample_name:"50S ribosomal protein L3" AND database:"EMDB" AND resolution:[2 TO 3}
Number of entries released by year
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mature 50S subunit

Release date: Jan. 22, 2025
Resolution: 2.98 Å
EM Method: Single-particle
Fitted PDBs: 9h3z

Lauer SM, Gasse J, Krizsan A, Reepmeyer M, Sprink T, Nikolay R, Spahn CMT, Hoffmann R

Nat Commun (2025) 16 pp. 567-567 [ DOI: doi:10.1038/s41467-025-55836-8 Pubmed: 39794318 ]

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LSU structure derived from the LSU sample of the mitoribosome from T. gondii.

Release date: Dec. 11, 2024
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 9g6k
Q-score: 0.482

Wang C, Kassem S, Rocha REO, Sun P, Nguyen TT, Kloehn J, Liu X, Brusini L, Bonavoglia A, Barua S, Boissier F, Lucia Del Cistia M, Peng H, Tang X, Xie F, Wang Z, Vadas O, Suo X, Hashem Y, Soldati-Favre D, Jia Y

Nat Commun (2024) 15 pp. 10689-10689 [ DOI: doi:10.1038/s41467-024-55033-z Pubmed: 39690155 ]

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E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site

Release date: Nov. 6, 2024
Resolution: 2.25 Å
EM Method: Single-particle
Fitted PDBs: 8yuo
Q-score: 0.648

Miyauchi K, Kimura S, Akiyama N, Inoue K, Ishiguro K, Vu TS, Srisuknimit V, Koyama K, Hayashi G, Soma A, Nagao A, Shirouzu M, Okamoto A, Waldor MK, Suzuki T

Nat Chem Biol (2024) [ DOI: doi:10.1038/s41589-024-01726-x Pubmed: 39300229 ]

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E. coli 70S ribosome complexed with P. putida tRNAIle2 and A4 mRNA

Release date: Nov. 6, 2024
Resolution: 2.39 Å
EM Method: Single-particle
Fitted PDBs: 8yup
Q-score: 0.651

Miyauchi K, Kimura S, Akiyama N, Inoue K, Ishiguro K, Vu TS, Srisuknimit V, Koyama K, Hayashi G, Soma A, Nagao A, Shirouzu M, Okamoto A, Waldor MK, Suzuki T

Nat Chem Biol (2024) [ DOI: doi:10.1038/s41589-024-01726-x Pubmed: 39300229 ]

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E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA

Release date: Nov. 6, 2024
Resolution: 2.41 Å
EM Method: Single-particle
Fitted PDBs: 8yuq
Q-score: 0.651

Miyauchi K, Kimura S, Akiyama N, Inoue K, Ishiguro K, Vu TS, Srisuknimit V, Koyama K, Hayashi G, Soma A, Nagao A, Shirouzu M, Okamoto A, Waldor MK, Suzuki T

Nat Chem Biol (2024) [ DOI: doi:10.1038/s41589-024-01726-x Pubmed: 39300229 ]

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E. coli 70S ribosome complexed with P. putida tRNAIle2 and Am4 mRNA

Release date: Nov. 6, 2024
Resolution: 2.47 Å
EM Method: Single-particle
Fitted PDBs: 8yur
Q-score: 0.624

Miyauchi K, Kimura S, Akiyama N, Inoue K, Ishiguro K, Vu TS, Srisuknimit V, Koyama K, Hayashi G, Soma A, Nagao A, Shirouzu M, Okamoto A, Waldor MK, Suzuki T

Nat Chem Biol (2024) [ DOI: doi:10.1038/s41589-024-01726-x Pubmed: 39300229 ]

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E. coli 70S ribosome complexed with P.putida tRNAIle2 and A(F)4 mRNA

Release date: Nov. 6, 2024
Resolution: 2.43 Å
EM Method: Single-particle
Fitted PDBs: 8yus
Q-score: 0.638

Miyauchi K, Kimura S, Akiyama N, Inoue K, Ishiguro K, Vu TS, Srisuknimit V, Koyama K, Hayashi G, Soma A, Nagao A, Shirouzu M, Okamoto A, Waldor MK, Suzuki T

Nat Chem Biol (2024) [ DOI: doi:10.1038/s41589-024-01726-x Pubmed: 39300229 ]

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70S initiation complex (tRNA-fMet M1 + CUG start codon)

Release date: Sept. 18, 2024
Resolution: 2.63 Å
EM Method: Single-particle
Fitted PDBs: 9ax7
Q-score: 0.603

Mattingly JM, Nguyen HA, Roy B, Fredrick K, Dunham CM

J Biol Chem (2024) 300 pp. 107743-107743 [ Pubmed: 39222680 DOI: doi:10.1016/j.jbc.2024.107743 ]

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70S initiation complex (tRNA-fMet M1, initiation factor 2 + CUG start codon)

Release date: Sept. 18, 2024
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 9ax8
Q-score: 0.552

Mattingly JM, Nguyen HA, Roy B, Fredrick K, Dunham CM

J Biol Chem (2024) 300 pp. 107743-107743 [ DOI: doi:10.1016/j.jbc.2024.107743 Pubmed: 39222680 ]

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70S initiation complex (tRNA-fMet M1 + UUG start codon)

Release date: Sept. 18, 2024
Resolution: 2.59 Å
EM Method: Single-particle
Fitted PDBs: 9cg5
Q-score: 0.618

Mattingly JM, Nguyen HA, Roy B, Fredrick K, Dunham CM

J Biol Chem (2024) 300 pp. 107743-107743 [ Pubmed: 39222680 DOI: doi:10.1016/j.jbc.2024.107743 ]

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