70S ribosome with A- and P-site tRNAs in Mycoplasma pneumoniae cells
Resolution: 4.7 Å
EM Method: Subtomogram averaging
Fitted PDBs: 7pal
Q-score: 0.324
Xue L, Lenz S, Zimmermann-Kogadeeva M, Tegunov D, Cramer P, Bork P, Rappsilber J, Mahamid J
Nature (2022) 610 pp. 205-211 [ Pubmed: 36171285 DOI: doi:10.1038/s41586-022-05255-2 ]
- Nascent peptide (459 Da, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s4 (23 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l11 (14 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l20 (14 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 30s ribosomal protein s11 (12 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 30s ribosomal protein s12 (15 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 30s ribosomal protein s19 (10 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l9 (17 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 30s ribosomal protein s17 (9 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 16s ribosomal rna (491 kDa, RNA from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s5 (24 kDa, Protein from Mycoplasmoides pneumoniae M129)
- Mrna (2 kDa, RNA from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l33 1 (6 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 23s ribosomal rna (940 kDa, RNA from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s16 (10 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 5s ribosomal rna (34 kDa, RNA from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s7 (17 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l3 (31 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l16 (15 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 30s ribosomal protein s10 (12 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 30s ribosomal protein s20 (9 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l6 (20 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 30s ribosomal protein s8 (15 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 30s ribosomal protein s14 type z (6 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 30s ribosomal protein s6 (25 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l17 (14 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l19 (13 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l14 (13 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l21 (11 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 30s ribosomal protein s15 (9 kDa, Protein from Mycoplasmoides pneumoniae M129)
- Cryo-electron tomograms of untreated mycoplasma pneumoniae cells (Cell from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l32 (6 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l18 (13 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l10 (17 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 30s ribosomal protein s2 (33 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l24 (12 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 30s ribosomal protein s3 (30 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 30s ribosomal protein s13 (14 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l2 (31 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l34 (5 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 30s ribosomal protein s21 (7 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 30s ribosomal protein s18 (12 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l13 (16 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l28 (7 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l36 (4 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l15 (16 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l29 (13 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l31 (10 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l4 (23 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l5 (20 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l22 (17 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l23 (25 kDa, Protein from Mycoplasmoides pneumoniae M129)
- Trna-phe (24 kDa, RNA from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s9 (15 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l27 (11 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l35 (6 kDa, Protein from Mycoplasmoides pneumoniae M129)
70S ribosome with A- and P-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells
Resolution: 4.9 Å
EM Method: Subtomogram averaging
Fitted PDBs: 7phb
Q-score: 0.297
Xue L, Lenz S, Zimmermann-Kogadeeva M, Tegunov D, Cramer P, Bork P, Rappsilber J, Mahamid J
Nature (2022) 610 pp. 205-211 [ Pubmed: 36171285 DOI: doi:10.1038/s41586-022-05255-2 ]
- Trna-phe (24 kDa, RNA from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s20 (9 kDa, Protein from Mycoplasma pneumoniae M129)
- 23s ribosomal rna (940 kDa, RNA from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l2 (31 kDa, Protein from Mycoplasma pneumoniae M129)
- Chloramphenicol (323 Da, Ligand)
- 50s ribosomal protein l3 (31 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l27 (11 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l16 (15 kDa, Protein from Mycoplasma pneumoniae M129)
- 16s ribosomal rna (491 kDa, RNA from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l13 (16 kDa, Protein from Mycoplasma pneumoniae M129)
- Nascent peptide (443 Da, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l31 (10 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l14 (13 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s13 (14 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s18 (12 kDa, Protein from Mycoplasma pneumoniae M129)
- Mrna (12 kDa, RNA from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l17 (14 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l36 (4 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l20 (14 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s2 (33 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l9 (17 kDa, Protein from Mycoplasma pneumoniae (strain ATCC 29342 / M129))
- 30s ribosomal protein s8 (15 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s5 (24 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s6 (25 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s7 (17 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s4 (23 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l15 (16 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l33 1 (6 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l10 (17 kDa, Protein from Mycoplasma pneumoniae M129)
- 5s ribosomal rna (34 kDa, RNA from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s11 (12 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s12 (15 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s17 (9 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l32 (6 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l24 (12 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s10 (12 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s16 (10 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l34 (5 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l29 (13 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l11 (14 kDa, Protein from Mycoplasma pneumoniae M129)
- Cryo-electron tomograms of chloramphenicol-treated mycoplasma pneumoniae cells (Cell from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l21 (11 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l18 (13 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l6 (20 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l19 (13 kDa, Protein from Mycoplasma pneumoniae (strain ATCC 29342 / M129))
- 30s ribosomal protein s15 (9 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s9 (15 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s19 (10 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s21 (7 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l5 (20 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s14 type z (6 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l35 (6 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l22 (17 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l23 (25 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l28 (7 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s3 (30 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l4 (23 kDa, Protein from Mycoplasma pneumoniae M129)
70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells
Resolution: 4.7 Å
EM Method: Subtomogram averaging
Fitted PDBs: 7pib
Q-score: 0.299
Xue L, Lenz S, Zimmermann-Kogadeeva M, Tegunov D, Cramer P, Bork P, Rappsilber J, Mahamid J
Nature (2022) 610 pp. 205-211 [ Pubmed: 36171285 DOI: doi:10.1038/s41586-022-05255-2 ]
- Trna-phe (24 kDa, RNA from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s20 (9 kDa, Protein from Mycoplasma pneumoniae M129)
- 23s ribosomal rna (940 kDa, RNA from Mycoplasma pneumoniae M129)
- Elongation factor g (76 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l2 (31 kDa, Protein from Mycoplasma pneumoniae M129)
- Cryo-electron tomograms of spectinomycin-treated mycoplasma pneumoniae cells (Cell from Mycoplasma pneumoniae M129)
- Spectinomycin (332 Da, Ligand)
- 50s ribosomal protein l3 (31 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l27 (11 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l16 (15 kDa, Protein from Mycoplasma pneumoniae M129)
- 16s ribosomal rna (491 kDa, RNA from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l13 (16 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l31 (10 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l14 (13 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s13 (14 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s18 (12 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l17 (14 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l36 (4 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l20 (14 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s2 (33 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s8 (15 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s5 (24 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s6 (25 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s7 (17 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s4 (23 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l15 (16 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l33 1 (6 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l10 (17 kDa, Protein from Mycoplasma pneumoniae M129)
- 5s ribosomal rna (34 kDa, RNA from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s11 (12 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s12 (15 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s17 (9 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l32 (6 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l24 (12 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s10 (12 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s16 (10 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l34 (5 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l29 (13 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l11 (14 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l21 (11 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l7/l12 (13 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l18 (13 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l6 (20 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s15 (9 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s9 (15 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s19 (10 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s21 (7 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l5 (20 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l9 (17 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s14 type z (6 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l35 (6 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l19 (13 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l22 (17 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l23 (25 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l28 (7 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s3 (30 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l4 (23 kDa, Protein from Mycoplasma pneumoniae M129)