Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7cpj
Q-score: 0.502
Fujita T, Yokoyama T, Shirouzu M, Taguchi H, Ito T, Iwasaki S
RNA (2022) 28 pp. 290-302 [ Pubmed: 34906996 DOI: doi:10.1261/rna.078188.120 ]
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli O121:H19)
- 30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli 2362-75)
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli 99.0741)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli O26:H11)
- 50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli 908573)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli 99.0741)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli 113303)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli 2-427-07 S4 C3)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli MS 117-3)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli 3-373-03 S4 C2)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli KTE73)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli G3/10)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli KTE112)
- 16s ribosomal rna (498 kDa, RNA from Escherichia coli)
- Proline (115 Da, Ligand)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli KTE75)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli 2.3916)
- 23s ribosomal rna (941 kDa, RNA from Escherichia coli)
- Mrna (910 Da, RNA from Escherichia coli)
- 30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- Isoleucine (131 Da, Ligand)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli 2-427-07 S4 C3)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli MS 84-1)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli 4.0522)
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli O7:K1 (strain IAI39 / ExPEC))
- 50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli 2.3916)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
- 5s ribosomal rna (38 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli H420)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli 907713)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli KTE73)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli O177)
- Ribosome (Complex from Escherichia coli)
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli UMEA 3718-1)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli MS 198-1)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli M863)
- 50s ribosomal protein l10 (17 kDa, Protein from Escherichia coli H461)
- P/p trna (24 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli HVH 87 (4-5977630))
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli KTE112)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli DEC1D)
- 50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli KTE64)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli TA054)
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli KTE112)
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli (strain K12))
Methicillin sensitive Staphylococcus aureus 70S ribosome
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 5tcu
Q-score: 0.431
Belousoff MJ, Eyal Z, Radjainia M, Ahmed T, Bamert RS, Matzov D, Bashan A, Zimmerman E, Mishra S, Cameron D, Elmlund H, Peleg AY, Bhushan S, Lithgow T, Yonath A
mBio (2017) 8 [ DOI: doi:10.1128/mBio.00395-17 Pubmed: 28487427 ]
- 50s ribosomal protein l29 (7 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s12 (15 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l18 (12 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l2 (29 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l15 (15 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s16 (9 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s7 (17 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l28 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l21 (11 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 23s rrna (946 kDa, RNA from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l20 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s13 (12 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s19 (9 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s14 type z (7 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l25 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l30 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s10 (9 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l31 type b (8 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- Mrna (4 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l5 (18 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s20 (8 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- E-site trna chain (24 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s9 (14 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s8 (14 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l14 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l24 (11 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s5 (16 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l36 (4 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- Methicillin sensitive staphylococcus aureus 70s ribosome (atcc 35556) (Complex from Staphylococcus aureus)
- 16s rrna (502 kDa, RNA from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s4 (22 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l33 1 (5 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s17 (9 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l35 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s15 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- P-site trna chain (24 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- Paromomycin (615 Da, Ligand)
- 30s ribosomal protein s11 (12 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l17 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l4 (22 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l27 (8 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 5s rrna chain (36 kDa, RNA from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l19 (12 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s3 (22 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l6 (19 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l16 (15 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l32 (5 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l13 (16 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s6 (11 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s18 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l3 (23 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l22 (12 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l23 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l34 (5 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- Magnesium ion (24 Da, Ligand)
Structure of the large subunit of the chloro-ribosome
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 5h1s
Q-score: 0.453
Sci Rep (2016) 6 pp. 35793-35793 [ Pubmed: 27762343 DOI: doi:10.1038/srep35793 ]
- 50s ribosomal protein l23, chloroplastic (13 kDa, Protein from Spinach)
- Chloro-ribosome 50s (1 MDa, Complex from Spinacia oleracea)
- 50s ribosomal protein l15 (20 kDa, Protein from Spinach)
- 50s ribosomal protein l36, chloroplastic (4 kDa, Protein from Spinach)
- 50s ribosomal protein l35, chloroplastic (8 kDa, Protein from Spinach)
- 50s ribosomal protein l28 (9 kDa, Protein from Spinach)
- 50s ribosomal protein l6 (20 kDa, Protein from Spinach)
- 50s ribosomal protein l34, chloroplastic (6 kDa, Protein from Spinach)
- 50s ribosomal protein l33, chloroplastic (7 kDa, Protein from Spinach)
- 50s ribosomal protein l9 (17 kDa, Protein from Spinach)
- 50s ribosomal protein 6, chloroplastic (12 kDa, Protein from Spinach)
- 5s rrna (39 kDa, RNA from Spinach)
- 50s ribosomal protein l27 (15 kDa, Protein from Spinach)
- 50s ribosomal protein l20, chloroplastic (15 kDa, Protein from Spinach)
- 50s ribosomal protein l19, chloroplastic (17 kDa, Protein from Spinach)
- 50s ribosomal protein l18 (13 kDa, Protein from Spinach)
- 50s ribosomal protein l3 (24 kDa, Protein from Spinach)
- 50s ribosomal protein l31 (10 kDa, Protein from Spinach)
- 23s rrna (911 kDa, RNA from Spinach)
- 50s ribosomal protein l21, chloroplastic (22 kDa, Protein from Spinach)
- 50s ribosomal protein l16, chloroplastic (15 kDa, Protein from Spinach)
- 50s ribosomal protein l17 (13 kDa, Protein from Spinach)
- 50s ribosomal protein 5 alpha, chloroplastic (15 kDa, Protein from Spinach)
- 50s ribosomal protein l32, chloroplastic (6 kDa, Protein from Spinach)
- 50s ribosomal protein l13, chloroplastic (22 kDa, Protein from Spinach)
- Spinach chloroplast 4.5s rrna (34 kDa, RNA from Spinach)
- 50s ribosomal protein l22, chloroplastic (23 kDa, Protein from Spinach)
- 50s ribosomal protein l24, chloroplastic (16 kDa, Protein from Spinach)
- 50s ribosomal protein l2, chloroplastic (29 kDa, Protein from Spinach)
- 50s ribosomal protein l29 (12 kDa, Protein from Spinach)
- 50s ribosomal protein l4, chloroplastic (27 kDa, Protein from Spinach)
- 50s ribosomal protein l5, chloroplastic (24 kDa, Protein from Spinach)
- 50s ribosomal protein l14, chloroplastic (13 kDa, Protein from Spinach)