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sample_name:"60S RIBOSOMAL PROTEIN L9" AND author_name:"Cheng" AND author_name:"S"
Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1
Release date: May 17, 2023
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8i9t
Q-score: 0.375
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8i9t
Q-score: 0.375
Lau B, Huang Z, Kellner N, Niu S, Berninghausen O, Beckmann R, Hurt E, Cheng J
EMBO Rep (2023) 24 pp. e56910-e56910 [ DOI: doi:10.15252/embr.202356910 Pubmed: 37129998 ]
Sample:
- Ribosomal protein l37 (10 kDa, Protein from Chaetomium thermophilum)
- Nucleolar protein 16 (26 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal subunit-like protein (22 kDa, Protein from Chaetomium thermophilum)
- Rrna-processing protein ebp2 (50 kDa, Protein from Chaetomium thermophilum)
- Duf2423 domain-containing protein (13 kDa, Protein from Chaetomium thermophilum)
- Dolichyl-diphosphooligosaccharide--protein glycotransferase (105 kDa, Protein from Chaetomium thermophilum)
- Zinc ion (65 Da, Ligand)
- Ribosomal rna-processing protein 1 (32 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l33-like protein (12 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l26-like protein (15 kDa, Protein from Chaetomium thermophilum)
- Ribosomal protein (24 kDa, Protein from Chaetomium thermophilum)
- Ribosome biogenesis protein erb1 (90 kDa, Protein from Chaetomium thermophilum)
- Rna (3341-mer) (1 MDa, RNA from Chaetomium thermophilum)
- 60s ribosomal protein l3-like protein (44 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l23-like protein (14 kDa, Protein from Chaetomium thermophilum)
- Pre-60s ribosome (Complex from Chaetomium thermophilum)
- Ribosomal protein l18-like protein (24 kDa, Protein from Chaetomium thermophilum)
- 60s ribosome subunit biogenesis protein nip7 (20 kDa, Protein from Chaetomium thermophilum)
- Ribosome biogenesis protein nsa2 homolog (29 kDa, Protein from Chaetomium thermophilum)
- Rna methyltransferase nop2-like protein (83 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l13 (24 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l7-like protein (28 kDa, Protein from Chaetomium thermophilum)
- Ribosome biogenesis protein c8f11.04 (43 kDa, Protein from Chaetomium thermophilum)
- Ribosome assembly factor mrt4 (30 kDa, Protein from Chaetomium thermophilum)
- Eukaryotic translation initiation factor 6 (26 kDa, Protein from Chaetomium thermophilum)
- Putative gtp binding protein (61 kDa, Protein from Chaetomium thermophilum)
- Ribosome (Complex from Chaetomium thermophilum)
- Atp-dependent rna helicase dbp10 (81 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l16-like protein (22 kDa, Protein from Chaetomium thermophilum)
- Nucleolar gtp-binding protein 1 (75 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l8 (29 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l25-like protein (17 kDa, Protein from Chaetomium thermophilum)
- Brix domain-containing protein (36 kDa, Protein from Chaetomium thermophilum)
- Brix domain-containing protein (49 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l4-like protein (39 kDa, Protein from Chaetomium thermophilum)
- Protein mak16 (39 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l9-like protein (21 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l32-like protein (15 kDa, Protein from Chaetomium thermophilum)
- Ribosome biogenesis protein rlp24 (26 kDa, Protein from Chaetomium thermophilum)
- Ribosomal rna-processing protein 15 (38 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l6 (22 kDa, Protein from Chaetomium thermophilum)
- Rna helicase (66 kDa, Protein from Chaetomium thermophilum)
- 60s ribosome biogenesis protein rrp14 (64 kDa, Protein from Chaetomium thermophilum)
- Brix domain-containing protein (54 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l20 (20 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l14-like protein (16 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l21-like protein (18 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l36 (12 kDa, Protein from Chaetomium thermophilum)
- Pescadillo homolog (77 kDa, Protein from Chaetomium thermophilum)
- Rna (256-mer) (82 kDa, RNA from Chaetomium thermophilum)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Rrna-processing protein (14 kDa, Protein from Chaetomium thermophilum)
- Putative rna-binding protein (45 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l17-like protein (21 kDa, Protein from Chaetomium thermophilum)
- Rna (161-mer) (51 kDa, RNA from Chaetomium thermophilum)
- Ribosomal protein l15 (24 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l12-like protein (17 kDa, Protein from Chaetomium thermophilum)
- Adomet-dependent rrna methyltransferase spb1 (83 kDa, Protein from Chaetomium thermophilum)
Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-2
Release date: May 17, 2023
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8i9v
Q-score: 0.46
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8i9v
Q-score: 0.46
Lau B, Huang Z, Kellner N, Niu S, Berninghausen O, Beckmann R, Hurt E, Cheng J
EMBO Rep (2023) 24 pp. e56910-e56910 [ DOI: doi:10.15252/embr.202356910 Pubmed: 37129998 ]
Sample:
- Ribosomal protein l37 (10 kDa, Protein from Chaetomium thermophilum)
- Nucleolar protein 16 (26 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal subunit-like protein (22 kDa, Protein from Chaetomium thermophilum)
- Rrna-processing protein ebp2 (50 kDa, Protein from Chaetomium thermophilum)
- Duf2423 domain-containing protein (13 kDa, Protein from Chaetomium thermophilum)
- Adomet-dependent rrna methyltransferase spb1 (95 kDa, Protein from Chaetomium thermophilum)
- Dolichyl-diphosphooligosaccharide--protein glycotransferase (105 kDa, Protein from Chaetomium thermophilum)
- Zinc ion (65 Da, Ligand)
- Ribosomal rna-processing protein 1 (32 kDa, Protein from Chaetomium thermophilum)
- Atp-dependent rna helicase dbp10 (102 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l33-like protein (12 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l26-like protein (15 kDa, Protein from Chaetomium thermophilum)
- Ribosomal protein (24 kDa, Protein from Chaetomium thermophilum)
- Ribosome biogenesis protein erb1 (90 kDa, Protein from Chaetomium thermophilum)
- Rna (3341-mer) (1 MDa, RNA from Chaetomium thermophilum)
- 60s ribosomal protein l3-like protein (44 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l23-like protein (14 kDa, Protein from Chaetomium thermophilum)
- Pre-60s ribosome (Complex from Chaetomium thermophilum)
- Ribosomal protein l18-like protein (24 kDa, Protein from Chaetomium thermophilum)
- 60s ribosome subunit biogenesis protein nip7 (20 kDa, Protein from Chaetomium thermophilum)
- Ribosome biogenesis protein nsa2 homolog (29 kDa, Protein from Chaetomium thermophilum)
- Rna methyltransferase nop2-like protein (83 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l13 (24 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l7-like protein (28 kDa, Protein from Chaetomium thermophilum)
- Ribosome biogenesis protein c8f11.04 (43 kDa, Protein from Chaetomium thermophilum)
- Ribosome assembly factor mrt4 (30 kDa, Protein from Chaetomium thermophilum)
- Eukaryotic translation initiation factor 6 (26 kDa, Protein from Chaetomium thermophilum)
- Putative gtp binding protein (61 kDa, Protein from Chaetomium thermophilum)
- Ribosome (Complex from Chaetomium thermophilum)
- 60s ribosomal protein l16-like protein (22 kDa, Protein from Chaetomium thermophilum)
- Nucleolar gtp-binding protein 1 (75 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l8 (29 kDa, Protein from Chaetomium thermophilum)
- Nucleolar complex-associated protein 3 (77 kDa, Protein from Chaetomium thermophilum)
- Brix domain-containing protein (36 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l25-like protein (17 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l4-like protein (39 kDa, Protein from Chaetomium thermophilum)
- Brix domain-containing protein (49 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l9-like protein (21 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l32-like protein (15 kDa, Protein from Chaetomium thermophilum)
- Ribosome biogenesis protein rlp24 (26 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l6 (22 kDa, Protein from Chaetomium thermophilum)
- Protein mak16 (39 kDa, Protein from Chaetomium thermophilum)
- Rna helicase (66 kDa, Protein from Chaetomium thermophilum)
- 60s ribosome biogenesis protein rrp14 (64 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l20 (20 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l14-like protein (16 kDa, Protein from Chaetomium thermophilum)
- Putative 60s ribosomal protein (13 kDa, Protein from Chaetomium thermophilum)
- Putative noc2 family protein (89 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l21-like protein (18 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l36 (12 kDa, Protein from Chaetomium thermophilum)
- Pescadillo homolog (77 kDa, Protein from Chaetomium thermophilum)
- Rna (256-mer) (82 kDa, RNA from Chaetomium thermophilum)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Rrna-processing protein (14 kDa, Protein from Chaetomium thermophilum)
- Putative rna-binding protein (45 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l17-like protein (21 kDa, Protein from Chaetomium thermophilum)
- Rna (161-mer) (51 kDa, RNA from Chaetomium thermophilum)
- Ribosomal protein l15 (24 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l12-like protein (17 kDa, Protein from Chaetomium thermophilum)
Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3
Release date: May 17, 2023
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8i9w
Q-score: 0.441
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8i9w
Q-score: 0.441
Lau B, Huang Z, Kellner N, Niu S, Berninghausen O, Beckmann R, Hurt E, Cheng J
EMBO Rep (2023) 24 pp. e56910-e56910 [ DOI: doi:10.15252/embr.202356910 Pubmed: 37129998 ]
Sample:
- Ribosomal protein l37 (10 kDa, Protein from Chaetomium thermophilum)
- Nucleolar protein 16 (26 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal subunit-like protein (22 kDa, Protein from Chaetomium thermophilum)
- Rrna-processing protein ebp2 (50 kDa, Protein from Chaetomium thermophilum)
- Duf2423 domain-containing protein (13 kDa, Protein from Chaetomium thermophilum)
- Adomet-dependent rrna methyltransferase spb1 (95 kDa, Protein from Chaetomium thermophilum)
- Putative 60s ribosomal protein (15 kDa, Protein from Chaetomium thermophilum)
- Dolichyl-diphosphooligosaccharide--protein glycotransferase (105 kDa, Protein from Chaetomium thermophilum)
- Atp-dependent rna helicase dbp10 (102 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l33-like protein (12 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l26-like protein (15 kDa, Protein from Chaetomium thermophilum)
- Ribosomal protein (24 kDa, Protein from Chaetomium thermophilum)
- Rna (3341-mer) (1 MDa, RNA from Chaetomium thermophilum)
- 60s ribosomal protein l3-like protein (44 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l23-like protein (14 kDa, Protein from Chaetomium thermophilum)
- Pre-60s ribosome (Complex from Chaetomium thermophilum)
- Ribosomal protein l18-like protein (24 kDa, Protein from Chaetomium thermophilum)
- 60s ribosome subunit biogenesis protein nip7 (20 kDa, Protein from Chaetomium thermophilum)
- Ribosome biogenesis protein nsa2 homolog (29 kDa, Protein from Chaetomium thermophilum)
- Rna methyltransferase nop2-like protein (83 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l13 (24 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l7-like protein (28 kDa, Protein from Chaetomium thermophilum)
- Ribosome biogenesis protein c8f11.04 (43 kDa, Protein from Chaetomium thermophilum)
- Ribosome assembly factor mrt4 (30 kDa, Protein from Chaetomium thermophilum)
- Eukaryotic translation initiation factor 6 (26 kDa, Protein from Chaetomium thermophilum)
- Putative gtp binding protein (61 kDa, Protein from Chaetomium thermophilum)
- Ribosome (Complex from Chaetomium thermophilum)
- 60s ribosomal protein l16-like protein (22 kDa, Protein from Chaetomium thermophilum)
- Nucleolar gtp-binding protein 1 (75 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l8 (29 kDa, Protein from Chaetomium thermophilum)
- Nucleolar complex-associated protein 3 (77 kDa, Protein from Chaetomium thermophilum)
- Brix domain-containing protein (36 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l25-like protein (17 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l4-like protein (39 kDa, Protein from Chaetomium thermophilum)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l9-like protein (21 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l32-like protein (15 kDa, Protein from Chaetomium thermophilum)
- Ribosome biogenesis protein rlp24 (26 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l6 (22 kDa, Protein from Chaetomium thermophilum)
- Rna helicase (66 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l20 (20 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l14-like protein (16 kDa, Protein from Chaetomium thermophilum)
- Putative 60s ribosomal protein (13 kDa, Protein from Chaetomium thermophilum)
- Ribosome biogenesis protein erb1 (90 kDa, Protein from Chaetomium thermophilum)
- Putative noc2 family protein (89 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l21-like protein (18 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l36 (12 kDa, Protein from Chaetomium thermophilum)
- Pescadillo homolog (77 kDa, Protein from Chaetomium thermophilum)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Rna (319-mer) (102 kDa, RNA from Chaetomium thermophilum)
- Rrna-processing protein (14 kDa, Protein from Chaetomium thermophilum)
- Putative rna-binding protein (45 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l17-like protein (21 kDa, Protein from Chaetomium thermophilum)
- Ribosomal protein l15 (24 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l12-like protein (17 kDa, Protein from Chaetomium thermophilum)
Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-1
Release date: May 17, 2023
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8i9x
Q-score: 0.51
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8i9x
Q-score: 0.51
Lau B, Huang Z, Kellner N, Niu S, Berninghausen O, Beckmann R, Hurt E, Cheng J
EMBO Rep (2023) 24 pp. e56910-e56910 [ DOI: doi:10.15252/embr.202356910 Pubmed: 37129998 ]
Sample:
- Ribosomal protein l37 (10 kDa, Protein from Chaetomium thermophilum)
- Nucleolar protein 16 (26 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal subunit-like protein (22 kDa, Protein from Chaetomium thermophilum)
- Rrna-processing protein ebp2 (50 kDa, Protein from Chaetomium thermophilum)
- Duf2423 domain-containing protein (13 kDa, Protein from Chaetomium thermophilum)
- Adomet-dependent rrna methyltransferase spb1 (95 kDa, Protein from Chaetomium thermophilum)
- Putative 60s ribosomal protein (15 kDa, Protein from Chaetomium thermophilum)
- Dolichyl-diphosphooligosaccharide--protein glycotransferase (105 kDa, Protein from Chaetomium thermophilum)
- Zinc ion (65 Da, Ligand)
- Atp-dependent rna helicase dbp10 (102 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l33-like protein (12 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l26-like protein (15 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l30-like protein (11 kDa, Protein from Chaetomium thermophilum)
- Ribosomal protein (24 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l38-like protein (9 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l22-like protein (14 kDa, Protein from Chaetomium thermophilum)
- Rna (3341-mer) (1 MDa, RNA from Chaetomium thermophilum)
- 60s ribosomal protein l3-like protein (44 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l23-like protein (14 kDa, Protein from Chaetomium thermophilum)
- Pre-60s ribosome (Complex from Chaetomium thermophilum)
- Ribosomal protein l18-like protein (24 kDa, Protein from Chaetomium thermophilum)
- 60s ribosome subunit biogenesis protein nip7 (20 kDa, Protein from Chaetomium thermophilum)
- Ribosome biogenesis protein nsa2 homolog (29 kDa, Protein from Chaetomium thermophilum)
- Rna methyltransferase nop2-like protein (83 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l13 (24 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l39 (6 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l7-like protein (28 kDa, Protein from Chaetomium thermophilum)
- Ribosome biogenesis protein c8f11.04 (43 kDa, Protein from Chaetomium thermophilum)
- Ribosome assembly factor mrt4 (30 kDa, Protein from Chaetomium thermophilum)
- Eukaryotic translation initiation factor 6 (26 kDa, Protein from Chaetomium thermophilum)
- Putative gtp binding protein (61 kDa, Protein from Chaetomium thermophilum)
- Ribosome (Complex from Chaetomium thermophilum)
- 60s ribosomal protein l16-like protein (22 kDa, Protein from Chaetomium thermophilum)
- Ribosomal protein l19 (317 kDa, Protein from Chaetomium thermophilum)
- Nucleolar gtp-binding protein 1 (75 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l8 (29 kDa, Protein from Chaetomium thermophilum)
- Nucleolar complex-associated protein 3 (77 kDa, Protein from Chaetomium thermophilum)
- Brix domain-containing protein (36 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l25-like protein (17 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l4-like protein (39 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l27 (15 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l9-like protein (21 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l32-like protein (15 kDa, Protein from Chaetomium thermophilum)
- Ribosome biogenesis protein rlp24 (26 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l6 (22 kDa, Protein from Chaetomium thermophilum)
- Ribosomal protein l34-like protein (13 kDa, Protein from Chaetomium thermophilum)
- Rna helicase (66 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l20 (20 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l14-like protein (16 kDa, Protein from Chaetomium thermophilum)
- Putative 60s ribosomal protein (13 kDa, Protein from Chaetomium thermophilum)
- Ribosome biogenesis protein erb1 (90 kDa, Protein from Chaetomium thermophilum)
- Putative noc2 family protein (89 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l21-like protein (18 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l36 (12 kDa, Protein from Chaetomium thermophilum)
- Pescadillo homolog (77 kDa, Protein from Chaetomium thermophilum)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Ribosome biogenesis protein ytm1 (52 kDa, Protein from Chaetomium thermophilum)
- Rna (319-mer) (102 kDa, RNA from Chaetomium thermophilum)
- Rrna-processing protein (14 kDa, Protein from Chaetomium thermophilum)
- Putative rna-binding protein (45 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l17-like protein (21 kDa, Protein from Chaetomium thermophilum)
- Ribosomal protein l15 (24 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l12-like protein (17 kDa, Protein from Chaetomium thermophilum)
Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2
Release date: May 17, 2023
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8i9y
Q-score: 0.471
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8i9y
Q-score: 0.471
Lau B, Huang Z, Kellner N, Niu S, Berninghausen O, Beckmann R, Hurt E, Cheng J
EMBO Rep (2023) 24 pp. e56910-e56910 [ DOI: doi:10.15252/embr.202356910 Pubmed: 37129998 ]
Sample:
- Ribosomal protein l37 (10 kDa, Protein from Chaetomium thermophilum)
- Nucleolar protein 16 (26 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal subunit-like protein (22 kDa, Protein from Chaetomium thermophilum)
- Rrna-processing protein ebp2 (50 kDa, Protein from Chaetomium thermophilum)
- Duf2423 domain-containing protein (13 kDa, Protein from Chaetomium thermophilum)
- Adomet-dependent rrna methyltransferase spb1 (95 kDa, Protein from Chaetomium thermophilum)
- Putative 60s ribosomal protein (15 kDa, Protein from Chaetomium thermophilum)
- Dolichyl-diphosphooligosaccharide--protein glycotransferase (105 kDa, Protein from Chaetomium thermophilum)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l33-like protein (12 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l26-like protein (15 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l30-like protein (11 kDa, Protein from Chaetomium thermophilum)
- Ribosomal protein (24 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l38-like protein (9 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l22-like protein (14 kDa, Protein from Chaetomium thermophilum)
- Rna (3341-mer) (1 MDa, RNA from Chaetomium thermophilum)
- 60s ribosomal protein l3-like protein (44 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l23-like protein (14 kDa, Protein from Chaetomium thermophilum)
- Pre-60s ribosome (Complex from Chaetomium thermophilum)
- Ribosomal protein l18-like protein (24 kDa, Protein from Chaetomium thermophilum)
- 60s ribosome subunit biogenesis protein nip7 (20 kDa, Protein from Chaetomium thermophilum)
- Ribosome biogenesis protein nsa2 homolog (29 kDa, Protein from Chaetomium thermophilum)
- Rna methyltransferase nop2-like protein (83 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l13 (24 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l39 (6 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l7-like protein (28 kDa, Protein from Chaetomium thermophilum)
- Ribosome biogenesis protein c8f11.04 (43 kDa, Protein from Chaetomium thermophilum)
- Ribosome assembly factor mrt4 (30 kDa, Protein from Chaetomium thermophilum)
- Eukaryotic translation initiation factor 6 (26 kDa, Protein from Chaetomium thermophilum)
- Putative gtp binding protein (61 kDa, Protein from Chaetomium thermophilum)
- Ribosome (Complex from Chaetomium thermophilum)
- 60s ribosomal protein l16-like protein (22 kDa, Protein from Chaetomium thermophilum)
- Ribosomal protein l19 (317 kDa, Protein from Chaetomium thermophilum)
- Nucleolar gtp-binding protein 1 (75 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l8 (29 kDa, Protein from Chaetomium thermophilum)
- Nucleolar complex-associated protein 3 (77 kDa, Protein from Chaetomium thermophilum)
- Brix domain-containing protein (36 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l25-like protein (17 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l4-like protein (39 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l27 (15 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l9-like protein (21 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l32-like protein (15 kDa, Protein from Chaetomium thermophilum)
- Ribosome biogenesis protein rlp24 (26 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l6 (22 kDa, Protein from Chaetomium thermophilum)
- Ribosomal protein l34-like protein (13 kDa, Protein from Chaetomium thermophilum)
- Rna helicase (66 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l20 (20 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l14-like protein (16 kDa, Protein from Chaetomium thermophilum)
- Putative 60s ribosomal protein (13 kDa, Protein from Chaetomium thermophilum)
- Ribosome biogenesis protein erb1 (90 kDa, Protein from Chaetomium thermophilum)
- Putative noc2 family protein (89 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l21-like protein (18 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l36 (12 kDa, Protein from Chaetomium thermophilum)
- Pescadillo homolog (77 kDa, Protein from Chaetomium thermophilum)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Ribosome biogenesis protein ytm1 (52 kDa, Protein from Chaetomium thermophilum)
- Rna (319-mer) (102 kDa, RNA from Chaetomium thermophilum)
- Rrna-processing protein (14 kDa, Protein from Chaetomium thermophilum)
- Putative rna-binding protein (45 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l17-like protein (21 kDa, Protein from Chaetomium thermophilum)
- Ribosomal protein l15 (24 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l12-like protein (17 kDa, Protein from Chaetomium thermophilum)
Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4
Release date: May 17, 2023
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8i9z
Q-score: 0.524
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8i9z
Q-score: 0.524
Lau B, Huang Z, Kellner N, Niu S, Berninghausen O, Beckmann R, Hurt E, Cheng J
EMBO Rep (2023) 24 pp. e56910-e56910 [ DOI: doi:10.15252/embr.202356910 Pubmed: 37129998 ]
Sample:
- Ribosomal protein l37 (10 kDa, Protein from Chaetomium thermophilum)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Nucleolar protein 16 (26 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal subunit-like protein (22 kDa, Protein from Chaetomium thermophilum)
- Rrna-processing protein ebp2 (50 kDa, Protein from Chaetomium thermophilum)
- Duf2423 domain-containing protein (13 kDa, Protein from Chaetomium thermophilum)
- Adomet-dependent rrna methyltransferase spb1 (95 kDa, Protein from Chaetomium thermophilum)
- Putative 60s ribosomal protein (15 kDa, Protein from Chaetomium thermophilum)
- Dolichyl-diphosphooligosaccharide--protein glycotransferase (105 kDa, Protein from Chaetomium thermophilum)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l33-like protein (12 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l26-like protein (15 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l30-like protein (11 kDa, Protein from Chaetomium thermophilum)
- Atp-dependent rna helicase (75 kDa, Protein from Chaetomium thermophilum)
- Ribosomal protein (24 kDa, Protein from Chaetomium thermophilum)
- Magnesium ion (24 Da, Ligand)
- Ribosome biogenesis protein erb1 (90 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l38-like protein (9 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l22-like protein (14 kDa, Protein from Chaetomium thermophilum)
- Rna (3341-mer) (1 MDa, RNA from Chaetomium thermophilum)
- 60s ribosomal protein l3-like protein (44 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l23-like protein (14 kDa, Protein from Chaetomium thermophilum)
- Pre-60s ribosome (Complex from Chaetomium thermophilum)
- Ribosomal protein l18-like protein (24 kDa, Protein from Chaetomium thermophilum)
- 60s ribosome subunit biogenesis protein nip7 (20 kDa, Protein from Chaetomium thermophilum)
- Ribosome biogenesis protein nsa2 homolog (29 kDa, Protein from Chaetomium thermophilum)
- Rna methyltransferase nop2-like protein (83 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l13 (24 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l39 (6 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l7-like protein (28 kDa, Protein from Chaetomium thermophilum)
- Ribosome biogenesis protein c8f11.04 (43 kDa, Protein from Chaetomium thermophilum)
- Ribosome assembly factor mrt4 (30 kDa, Protein from Chaetomium thermophilum)
- Eukaryotic translation initiation factor 6 (26 kDa, Protein from Chaetomium thermophilum)
- Putative gtp binding protein (61 kDa, Protein from Chaetomium thermophilum)
- Ribosome (Complex from Chaetomium thermophilum)
- 60s ribosomal protein l16-like protein (22 kDa, Protein from Chaetomium thermophilum)
- Ribosomal protein l19 (317 kDa, Protein from Chaetomium thermophilum)
- Nucleolar gtp-binding protein 1 (75 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l8 (29 kDa, Protein from Chaetomium thermophilum)
- Nucleolar complex-associated protein 3 (77 kDa, Protein from Chaetomium thermophilum)
- Brix domain-containing protein (36 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l25-like protein (17 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l4-like protein (39 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l27 (15 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l9-like protein (21 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l32-like protein (15 kDa, Protein from Chaetomium thermophilum)
- Ribosome biogenesis protein rlp24 (26 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l6 (22 kDa, Protein from Chaetomium thermophilum)
- Ribosomal protein l34-like protein (13 kDa, Protein from Chaetomium thermophilum)
- Rna helicase (66 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l20 (20 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l14-like protein (16 kDa, Protein from Chaetomium thermophilum)
- Putative 60s ribosomal protein (13 kDa, Protein from Chaetomium thermophilum)
- Putative noc2 family protein (89 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l21-like protein (18 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l36 (12 kDa, Protein from Chaetomium thermophilum)
- Pescadillo homolog (77 kDa, Protein from Chaetomium thermophilum)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Ribosome biogenesis protein ytm1 (52 kDa, Protein from Chaetomium thermophilum)
- Rna (319-mer) (102 kDa, RNA from Chaetomium thermophilum)
- Rrna-processing protein (14 kDa, Protein from Chaetomium thermophilum)
- Putative rna-binding protein (45 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l17-like protein (21 kDa, Protein from Chaetomium thermophilum)
- Ribosomal protein l15 (24 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l12-like protein (17 kDa, Protein from Chaetomium thermophilum)
Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Puf6
Release date: May 17, 2023
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8ia0
Q-score: 0.531
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8ia0
Q-score: 0.531
Lau B, Huang Z, Kellner N, Niu S, Berninghausen O, Beckmann R, Hurt E, Cheng J
EMBO Rep (2023) 24 pp. e56910-e56910 [ DOI: doi:10.15252/embr.202356910 Pubmed: 37129998 ]
Sample:
- Ribosomal protein l37 (10 kDa, Protein from Chaetomium thermophilum)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Nucleolar protein 16 (26 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal subunit-like protein (22 kDa, Protein from Chaetomium thermophilum)
- Nucleolar protein 12 (26 kDa, Protein from Chaetomium thermophilum)
- Rrna-processing protein ebp2 (50 kDa, Protein from Chaetomium thermophilum)
- Duf2423 domain-containing protein (13 kDa, Protein from Chaetomium thermophilum)
- Adomet-dependent rrna methyltransferase spb1 (95 kDa, Protein from Chaetomium thermophilum)
- Putative 60s ribosomal protein (15 kDa, Protein from Chaetomium thermophilum)
- Dolichyl-diphosphooligosaccharide--protein glycotransferase (105 kDa, Protein from Chaetomium thermophilum)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l2-like protein (27 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l33-like protein (12 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l26-like protein (15 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l30-like protein (11 kDa, Protein from Chaetomium thermophilum)
- Atp-dependent rna helicase (75 kDa, Protein from Chaetomium thermophilum)
- Ribosomal protein (24 kDa, Protein from Chaetomium thermophilum)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l38-like protein (9 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l22-like protein (14 kDa, Protein from Chaetomium thermophilum)
- Rna (3341-mer) (1 MDa, RNA from Chaetomium thermophilum)
- 60s ribosomal protein l3-like protein (44 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l23-like protein (14 kDa, Protein from Chaetomium thermophilum)
- Pre-60s ribosome (Complex from Chaetomium thermophilum)
- Ribosomal protein l18-like protein (24 kDa, Protein from Chaetomium thermophilum)
- 60s ribosome subunit biogenesis protein nip7 (20 kDa, Protein from Chaetomium thermophilum)
- Ribosome biogenesis protein nsa2 homolog (29 kDa, Protein from Chaetomium thermophilum)
- Rna methyltransferase nop2-like protein (83 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l13 (24 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l39 (6 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l7-like protein (28 kDa, Protein from Chaetomium thermophilum)
- Ribosome biogenesis protein c8f11.04 (43 kDa, Protein from Chaetomium thermophilum)
- Ribosome assembly factor mrt4 (30 kDa, Protein from Chaetomium thermophilum)
- Eukaryotic translation initiation factor 6 (26 kDa, Protein from Chaetomium thermophilum)
- Putative gtp binding protein (61 kDa, Protein from Chaetomium thermophilum)
- Ribosome (Complex from Chaetomium thermophilum)
- 60s ribosomal protein l16-like protein (22 kDa, Protein from Chaetomium thermophilum)
- Ribosomal protein l19 (317 kDa, Protein from Chaetomium thermophilum)
- Nucleolar gtp-binding protein 1 (75 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l8 (29 kDa, Protein from Chaetomium thermophilum)
- Nucleolar complex-associated protein 3 (77 kDa, Protein from Chaetomium thermophilum)
- Brix domain-containing protein (36 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l25-like protein (17 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l4-like protein (39 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l27 (15 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l9-like protein (21 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l32-like protein (15 kDa, Protein from Chaetomium thermophilum)
- Ribosome biogenesis protein rlp24 (26 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l6 (22 kDa, Protein from Chaetomium thermophilum)
- Pum-hd domain-containing protein (77 kDa, Protein from Chaetomium thermophilum)
- Rna helicase (66 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l43-like protein (10 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l20 (20 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l14-like protein (16 kDa, Protein from Chaetomium thermophilum)
- Putative 60s ribosomal protein (13 kDa, Protein from Chaetomium thermophilum)
- Ribosome biogenesis protein erb1 (90 kDa, Protein from Chaetomium thermophilum)
- Putative noc2 family protein (89 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l21-like protein (18 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l36 (12 kDa, Protein from Chaetomium thermophilum)
- Pescadillo homolog (77 kDa, Protein from Chaetomium thermophilum)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Ribosome biogenesis protein ytm1 (52 kDa, Protein from Chaetomium thermophilum)
- Rna (319-mer) (102 kDa, RNA from Chaetomium thermophilum)
- Rrna-processing protein (14 kDa, Protein from Chaetomium thermophilum)
- Putative rna-binding protein (45 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l17-like protein (21 kDa, Protein from Chaetomium thermophilum)
- Ribosomal protein l34-like protein (13 kDa, Protein from Chaetomium thermophilum)
- Ribosomal protein l15 (24 kDa, Protein from Chaetomium thermophilum)
- 60s ribosomal protein l12-like protein (17 kDa, Protein from Chaetomium thermophilum)
High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells
Release date: April 5, 2023
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7xnx
Q-score: 0.58
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7xnx
Q-score: 0.58
Zhou F, Aroua N, Liu Y, Rohde C, Cheng J, Wirth AK, Fijalkowska D, Gollner S, Lotze M, Yun H, Yu X, Pabst C, Sauer T, Oellerich T, Serve H, Rollig C, Bornhauser M, Thiede C, Baldus C, Frye M, Raffel S, Krijgsveld J, Jeremias I, Beckmann R, Trumpp A, Muller-Tidow C
Cancer Discov (2023) 13 pp. 332-347 [ DOI: doi:10.1158/2159-8290.CD-22-0210 Pubmed: 36259929 ]
Sample:
- 40s ribosomal protein s29 (6 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l28 (15 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l35a (12 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s30 (6 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l41 (3 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s24 (15 kDa, Protein from Homo sapiens)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l13a (23 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l8 (28 kDa, Protein from Homo sapiens)
- 5s rrna (38 kDa, RNA from Homo sapiens)
- 40s ribosomal protein s17 (15 kDa, Protein from Homo sapiens)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l9 (21 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l13 (24 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s25 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s27 (9 kDa, Protein from Homo sapiens)
- Ribosomal protein l10 isoform a (24 kDa, Protein from Homo sapiens)
- Trna (24 kDa, RNA from Homo sapiens)
- 60s ribosomal protein l37 (11 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l34 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s7 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s20 (13 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l18a (20 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein s16 (16 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l21 (18 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l37a (10 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l38 (8 kDa, Protein from Homo sapiens)
- Ubiquitin-40s ribosomal protein s27a (15 kDa, Protein from Homo sapiens)
- 18s rrna (603 kDa, RNA from Homo sapiens)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l27 (32 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s11 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s6 (28 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l23 (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l32 (15 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l19 (23 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l29 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s8 (24 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s14 (16 kDa, Protein from Homo sapiens)
- Ribosome (Complex from Homo sapiens)
- 60s ribosomal protein l11 (20 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3a (30 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l22 (14 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s26 (13 kDa, Protein from Homo sapiens)
- 5.8s rrna (50 kDa, RNA from Homo sapiens)
- 60s ribosomal protein l35 (14 kDa, Protein from Homo sapiens)
- 28s rrna (1 MDa, RNA from Homo sapiens)
- 40s ribosomal protein s5 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15a (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l23a (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l3 (46 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s10 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s21 (9 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l7a (30 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l4 (47 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
- 60s ribosomal protein l24 (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l15 (24 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s12 (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l18 (21 kDa, Protein from Homo sapiens)
- 40s ribosomal protein sa (32 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l5 (34 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l6 (32 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l31 (14 kDa, Protein from Homo sapiens)
- Potassium ion (39 Da, Ligand)
- 40s ribosomal protein s3 (26 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l7 (29 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l36a (12 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l26 (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l39 (6 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s18 (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l17 (21 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s23 (15 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l14 (23 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l30 (12 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s19 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s28 (7 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s2 (31 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s13 (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l36 (12 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s9 (22 kDa, Protein from Homo sapiens)
High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells
Release date: April 5, 2023
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 7xny
Q-score: 0.56
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 7xny
Q-score: 0.56
Zhou F, Aroua N, Liu Y, Rohde C, Cheng J, Wirth AK, Fijalkowska D, Gollner S, Lotze M, Yun H, Yu X, Pabst C, Sauer T, Oellerich T, Serve H, Rollig C, Bornhauser M, Thiede C, Baldus C, Frye M, Raffel S, Krijgsveld J, Jeremias I, Beckmann R, Trumpp A, Muller-Tidow C
Cancer Discov (2023) 13 pp. 332-347 [ DOI: doi:10.1158/2159-8290.CD-22-0210 Pubmed: 36259929 ]
Sample:
- 40s ribosomal protein s29 (6 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l28 (15 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l35a (12 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s30 (6 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l41 (3 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s24 (15 kDa, Protein from Homo sapiens)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l13a (23 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l8 (28 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s17 (15 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l27 (15 kDa, Protein from Homo sapiens)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l9 (21 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l13 (24 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s25 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s27 (9 kDa, Protein from Homo sapiens)
- Ribosomal protein l10 isoform a (24 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l37 (11 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l34 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s7 (22 kDa, Protein from Homo sapiens)
- Ubiquitin-40s ribosomal protein s27a (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s20 (13 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l18a (20 kDa, Protein from Homo sapiens)
- 18s rrna (603 kDa, RNA from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein s16 (16 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l21 (18 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l37a (10 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l38 (8 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s11 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s6 (28 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l23 (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l32 (15 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l19 (23 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l29 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s8 (24 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s14 (16 kDa, Protein from Homo sapiens)
- Ribosome (Complex from Homo sapiens)
- 60s ribosomal protein l11 (20 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3a (30 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l22 (14 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s26 (13 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l35 (14 kDa, Protein from Homo sapiens)
- 28s rrna (1 MDa, RNA from Homo sapiens)
- 40s ribosomal protein s5 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15a (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l23a (17 kDa, Protein from Homo sapiens)
- 5s rrna (38 kDa, RNA from Homo sapiens)
- 60s ribosomal protein l3 (46 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s10 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s21 (9 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l7a (30 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l4 (47 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
- 60s ribosomal protein l24 (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l15 (24 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s12 (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l18 (21 kDa, Protein from Homo sapiens)
- 40s ribosomal protein sa (32 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l5 (34 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l6 (32 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l31 (14 kDa, Protein from Homo sapiens)
- Potassium ion (39 Da, Ligand)
- 40s ribosomal protein s3 (26 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l7 (29 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l36a (12 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l26 (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l39 (6 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s18 (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l17 (21 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s23 (15 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l14 (23 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l27a (16 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l30 (12 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s19 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s28 (7 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s2 (31 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s13 (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l36 (12 kDa, Protein from Homo sapiens)
- 5.8s rrna (50 kDa, RNA from Homo sapiens)
- 40s ribosomal protein s9 (22 kDa, Protein from Homo sapiens)
Cryo-EM structure of 80S ribosome from mouse kidney
Release date: Feb. 2, 2022
Resolution: 2.82 Å
EM Method: Single-particle
Fitted PDBs: 7cpu
Q-score: 0.58
Resolution: 2.82 Å
EM Method: Single-particle
Fitted PDBs: 7cpu
Q-score: 0.58
Li H, Huo Y, He X, Yao L, Zhang H, Cui Y, Xiao H, Xie W, Zhang D, Wang Y, Zhang S, Tu H, Cheng Y, Guo Y, Cao X, Zhu Y, Jiang T, Guo X, Qin Y, Sha J
Nature (2022) 612 pp. 725-731 [ Pubmed: 36517592 DOI: doi:10.1038/s41586-022-05508-0 ]
Sample:
- 40s ribosomal protein s14 (16 kDa, Protein from Mus musculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Mus musculus)
- Trna (24 kDa, RNA from Mus musculus)
- 40s ribosomal protein s18 (17 kDa, Protein from Mus musculus)
- 40s ribosomal protein s15 (17 kDa, Protein from Mus musculus)
- 40s ribosomal protein s30 (14 kDa, Protein from Mus musculus)
- 60s ribosomal protein l9 (21 kDa, Protein from Mus musculus)
- 60s ribosomal protein l5 (34 kDa, Protein from Mus musculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Mus musculus)
- 40s ribosomal protein s23 (15 kDa, Protein from Mus musculus)
- 60s ribosomal protein l37a (10 kDa, Protein from Mus musculus)
- 60s ribosomal protein l23 (14 kDa, Protein from Mus musculus)
- Mus musculus 18s ribosomal rna (603 kDa, RNA from Mus musculus)
- 40s ribosomal protein s7 (22 kDa, Protein from Mus musculus)
- 60s ribosomal protein l26 (17 kDa, Protein from Mus musculus)
- 40s ribosomal protein s29 (6 kDa, Protein from Mus musculus)
- Mus musculus 80s ribosome from kidney (Complex from Mus musculus)
- 60s ribosomal protein l19 (23 kDa, Protein from Mus musculus)
- 60s ribosomal protein l32 (15 kDa, Protein from Mus musculus)
- 60s ribosomal protein l37 (11 kDa, Protein from Mus musculus)
- 60s ribosomal protein l28 (15 kDa, Protein from Mus musculus)
- 40s ribosomal protein s13 (17 kDa, Protein from Mus musculus)
- 40s ribosomal protein s5 (22 kDa, Protein from Mus musculus)
- 60s ribosomal protein l30 (12 kDa, Protein from Mus musculus)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Mus musculus)
- 40s ribosomal protein s3a (29 kDa, Protein from Mus musculus)
- 60s ribosomal protein l24 (17 kDa, Protein from Mus musculus)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Mus musculus)
- 40s ribosomal protein s11 (18 kDa, Protein from Mus musculus)
- Ribosomal protein l39 (6 kDa, Protein from Mus musculus)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Mus musculus)
- 60s ribosomal protein l4 (47 kDa, Protein from Mus musculus)
- Magnesium ion (24 Da, Ligand)
- Mus musculus 28s ribosomal rna (1 MDa, RNA from Mus musculus)
- 40s ribosomal protein s26 (13 kDa, Protein from Mus musculus)
- 40s ribosomal protein s9 (22 kDa, Protein from Mus musculus)
- 60s ribosomal protein l18a (20 kDa, Protein from Mus musculus)
- 40s ribosomal protein s2 (31 kDa, Protein from Mus musculus)
- 60s ribosomal protein l10 (24 kDa, Protein from Mus musculus)
- 60s ribosomal protein l34 (13 kDa, Protein from Mus musculus)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s25 (13 kDa, Protein from Mus musculus)
- 40s ribosomal protein s6 (28 kDa, Protein from Mus musculus)
- 60s ribosomal protein l15 (24 kDa, Protein from Mus musculus)
- Mus musculus 5s ribosomal rna (38 kDa, RNA from Mus musculus)
- 60s ribosomal protein l22 (14 kDa, Protein from Mus musculus)
- 60s ribosomal protein l7a (30 kDa, Protein from Mus musculus)
- 60s ribosomal protein l6 (33 kDa, Protein from Mus musculus)
- 40s ribosomal protein s15a (14 kDa, Protein from Mus musculus)
- 60s ribosomal protein l3 (46 kDa, Protein from Mus musculus)
- 40s ribosomal protein s20 (13 kDa, Protein from Mus musculus)
- 60s ribosomal protein l38 (8 kDa, Protein from Mus musculus)
- 60s ribosomal protein l36a (12 kDa, Protein from Mus musculus)
- 60s ribosomal protein l7 (31 kDa, Protein from Mus musculus)
- 40s ribosomal protein s21 (9 kDa, Protein from Mus musculus)
- 60s ribosomal protein l23a (17 kDa, Protein from Mus musculus)
- 40s ribosomal protein s17 (15 kDa, Protein from Mus musculus)
- 40s ribosomal protein s19 (16 kDa, Protein from Mus musculus)
- 40s ribosomal protein s28 (7 kDa, Protein from Mus musculus)
- 60s ribosomal protein l11 (20 kDa, Protein from Mus musculus)
- Water (18 Da, Ligand)
- 60s ribosomal protein l18 (21 kDa, Protein from Mus musculus)
- 40s ribosomal protein sa (32 kDa, Protein from Mus musculus)
- 40s ribosomal protein s10 (18 kDa, Protein from Mus musculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Mus musculus)
- 60s ribosomal protein l21 (18 kDa, Protein from Mus musculus)
- 40s ribosomal protein s16 (16 kDa, Protein from Mus musculus)
- 60s ribosomal protein l35a (12 kDa, Protein from Mus musculus)
- 60s ribosomal protein l31 (14 kDa, Protein from Mus musculus)
- 60s ribosomal protein l14 (23 kDa, Protein from Mus musculus)
- 60s ribosomal protein l13a (23 kDa, Protein from Mus musculus)
- 40s ribosomal protein s8 (24 kDa, Protein from Mus musculus)
- 40s ribosomal protein s24 (15 kDa, Protein from Mus musculus)
- 60s ribosomal protein l8 (28 kDa, Protein from Mus musculus)
- 60s ribosomal protein l29 (17 kDa, Protein from Mus musculus)
- 60s ribosomal protein l13 (24 kDa, Protein from Mus musculus)
- 60s ribosomal protein l36 (12 kDa, Protein from Mus musculus)
- 60s ribosomal protein l35 (14 kDa, Protein from Mus musculus)
- 60s ribosomal protein l17 (21 kDa, Protein from Mus musculus)
- 40s ribosomal protein s3 (26 kDa, Protein from Mus musculus)
- Mus musculus 5.8s ribosomal rna (50 kDa, RNA from Mus musculus)
- 60s ribosomal protein l27a (16 kDa, Protein from Mus musculus)