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sample_name:"60S RIBOSOMAL PROTEIN L9" AND author_name:"H" AND author_name:"F"
Release date: Dec. 11, 2024
Resolution: 1.78 Å
EM Method: Single-particle
Fitted PDBs: 8qyx
Q-score: 0.703
Resolution: 1.78 Å
EM Method: Single-particle
Fitted PDBs: 8qyx
Q-score: 0.703
Wiechert F, Unbehaun A, Sprink T, Seibel H, Burger J, Loerke J, Mielke T, Diebolder CA, Schacherl M, Spahn CMT
Nucleic Acids Res (2025) 53 [ DOI: doi:10.1093/nar/gkae1191 Pubmed: 39658079 ]
Sample:
- Spermine (202 Da, Ligand)
- 1,4-diaminobutane (88 Da, Ligand)
- 60s ribosomal protein l11 (20 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l6 (32 kDa, Protein from Homo sapiens)
- Human mature large ribosomal subunit (Complex from Homo sapiens)
- 60s ribosomal protein l31 (14 kDa, Protein from Homo sapiens)
- Potassium ion (39 Da, Ligand)
- 60s ribosomal protein l28 (15 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l35a (12 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l27 (15 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l26 (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l22 (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l18a (20 kDa, Protein from Homo sapiens)
- 28s rrna (1 MDa, RNA from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l21 (18 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l39 (6 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l13a (23 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l37a (10 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l38 (8 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l36a (12 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l35 (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l17 (21 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul15 (16 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l14 (23 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein el40 (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l23a (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l37 (11 kDa, Protein from Homo sapiens)
- 5s rrna (38 kDa, RNA from Homo sapiens)
- 5.8s rrna (50 kDa, RNA from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l30 (12 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul2 (28 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l23 (14 kDa, Protein from Homo sapiens)
- Ribosomal protein ul16-like (24 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l7a (30 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l32 (15 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul3 (46 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l4 (47 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l36 (12 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l9 (21 kDa, Protein from Homo sapiens)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Water (18 Da, Ligand)
- 60s ribosomal protein l13 (24 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul30 (29 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l19 (23 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l24 (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l15 (24 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l29 (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l18 (21 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l5 (34 kDa, Protein from Homo sapiens)
- Spermidine (145 Da, Ligand)
- 60s ribosomal protein l34 (13 kDa, Protein from Homo sapiens)
High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells
Release date: April 5, 2023
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7xnx
Q-score: 0.58
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7xnx
Q-score: 0.58
Zhou F, Aroua N, Liu Y, Rohde C, Cheng J, Wirth AK, Fijalkowska D, Gollner S, Lotze M, Yun H, Yu X, Pabst C, Sauer T, Oellerich T, Serve H, Rollig C, Bornhauser M, Thiede C, Baldus C, Frye M, Raffel S, Krijgsveld J, Jeremias I, Beckmann R, Trumpp A, Muller-Tidow C
Cancer Discov (2023) 13 pp. 332-347 [ DOI: doi:10.1158/2159-8290.CD-22-0210 Pubmed: 36259929 ]
Sample:
- 40s ribosomal protein s29 (6 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l28 (15 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l35a (12 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s30 (6 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l41 (3 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s24 (15 kDa, Protein from Homo sapiens)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l13a (23 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l8 (28 kDa, Protein from Homo sapiens)
- 5s rrna (38 kDa, RNA from Homo sapiens)
- 40s ribosomal protein s17 (15 kDa, Protein from Homo sapiens)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l9 (21 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l13 (24 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s25 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s27 (9 kDa, Protein from Homo sapiens)
- Ribosomal protein l10 isoform a (24 kDa, Protein from Homo sapiens)
- Trna (24 kDa, RNA from Homo sapiens)
- 60s ribosomal protein l37 (11 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l34 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s7 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s20 (13 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l18a (20 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein s16 (16 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l21 (18 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l37a (10 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l38 (8 kDa, Protein from Homo sapiens)
- Ubiquitin-40s ribosomal protein s27a (15 kDa, Protein from Homo sapiens)
- 18s rrna (603 kDa, RNA from Homo sapiens)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l27 (32 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s11 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s6 (28 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l23 (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l32 (15 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l19 (23 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l29 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s8 (24 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s14 (16 kDa, Protein from Homo sapiens)
- Ribosome (Complex from Homo sapiens)
- 60s ribosomal protein l11 (20 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3a (30 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l22 (14 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s26 (13 kDa, Protein from Homo sapiens)
- 5.8s rrna (50 kDa, RNA from Homo sapiens)
- 60s ribosomal protein l35 (14 kDa, Protein from Homo sapiens)
- 28s rrna (1 MDa, RNA from Homo sapiens)
- 40s ribosomal protein s5 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15a (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l23a (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l3 (46 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s10 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s21 (9 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l7a (30 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l4 (47 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
- 60s ribosomal protein l24 (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l15 (24 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s12 (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l18 (21 kDa, Protein from Homo sapiens)
- 40s ribosomal protein sa (32 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l5 (34 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l6 (32 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l31 (14 kDa, Protein from Homo sapiens)
- Potassium ion (39 Da, Ligand)
- 40s ribosomal protein s3 (26 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l7 (29 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l36a (12 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l26 (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l39 (6 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s18 (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l17 (21 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s23 (15 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l14 (23 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l30 (12 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s19 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s28 (7 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s2 (31 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s13 (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l36 (12 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s9 (22 kDa, Protein from Homo sapiens)
High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells
Release date: April 5, 2023
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 7xny
Q-score: 0.56
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 7xny
Q-score: 0.56
Zhou F, Aroua N, Liu Y, Rohde C, Cheng J, Wirth AK, Fijalkowska D, Gollner S, Lotze M, Yun H, Yu X, Pabst C, Sauer T, Oellerich T, Serve H, Rollig C, Bornhauser M, Thiede C, Baldus C, Frye M, Raffel S, Krijgsveld J, Jeremias I, Beckmann R, Trumpp A, Muller-Tidow C
Cancer Discov (2023) 13 pp. 332-347 [ DOI: doi:10.1158/2159-8290.CD-22-0210 Pubmed: 36259929 ]
Sample:
- 40s ribosomal protein s29 (6 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l28 (15 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l35a (12 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s30 (6 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l41 (3 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s24 (15 kDa, Protein from Homo sapiens)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l13a (23 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l8 (28 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s17 (15 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l27 (15 kDa, Protein from Homo sapiens)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l9 (21 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l13 (24 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s25 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s27 (9 kDa, Protein from Homo sapiens)
- Ribosomal protein l10 isoform a (24 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l37 (11 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l34 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s7 (22 kDa, Protein from Homo sapiens)
- Ubiquitin-40s ribosomal protein s27a (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s20 (13 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l18a (20 kDa, Protein from Homo sapiens)
- 18s rrna (603 kDa, RNA from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein s16 (16 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l21 (18 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l37a (10 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l38 (8 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s11 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s6 (28 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l23 (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l32 (15 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l19 (23 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l29 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s8 (24 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s14 (16 kDa, Protein from Homo sapiens)
- Ribosome (Complex from Homo sapiens)
- 60s ribosomal protein l11 (20 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3a (30 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l22 (14 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s26 (13 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l35 (14 kDa, Protein from Homo sapiens)
- 28s rrna (1 MDa, RNA from Homo sapiens)
- 40s ribosomal protein s5 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15a (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l23a (17 kDa, Protein from Homo sapiens)
- 5s rrna (38 kDa, RNA from Homo sapiens)
- 60s ribosomal protein l3 (46 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s10 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s21 (9 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l7a (30 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l4 (47 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
- 60s ribosomal protein l24 (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l15 (24 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s12 (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l18 (21 kDa, Protein from Homo sapiens)
- 40s ribosomal protein sa (32 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l5 (34 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l6 (32 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l31 (14 kDa, Protein from Homo sapiens)
- Potassium ion (39 Da, Ligand)
- 40s ribosomal protein s3 (26 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l7 (29 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l36a (12 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l26 (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l39 (6 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s18 (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l17 (21 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s23 (15 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l14 (23 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l27a (16 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l30 (12 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s19 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s28 (7 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s2 (31 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s13 (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l36 (12 kDa, Protein from Homo sapiens)
- 5.8s rrna (50 kDa, RNA from Homo sapiens)
- 40s ribosomal protein s9 (22 kDa, Protein from Homo sapiens)
Structure of pre-60S particle bound to DRG1(AFG2)
Release date: Sept. 21, 2022
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7z34
Q-score: 0.227
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7z34
Q-score: 0.227
Prattes M, Grishkovskaya I, Hodirnau VV, Hetzmannseder C, Zisser G, Sailer C, Kargas V, Loibl M, Gerhalter M, Kofler L, Warren AJ, Stengel F, Haselbach D, Bergler H
Nat Struct Mol Biol (2022) 29 pp. 942-953 [ DOI: doi:10.1038/s41594-022-00832-5 Pubmed: 36097293 ]
Sample:
- 60s ribosomal protein l26-a (14 kDa, Protein from Saccharomyces cerevisiae S288C)
- Atpase family gene 2 protein (84 kDa, Protein from Saccharomyces cerevisiae S288C)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Ribosome assembly factor mrt4 (27 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l2-a (27 kDa, Protein from Saccharomyces cerevisiae S288C)
- Bud site selection protein 20 (18 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l25 (15 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l9-a (21 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l5 (33 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l33-a (12 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l43-a (10 kDa, Protein from Saccharomyces cerevisiae S288C)
- Nucleolar gtp-binding protein 1 (74 kDa, Protein from Saccharomyces cerevisiae S288C)
- Unknown peptide (1 kDa, Protein from Saccharomyces cerevisiae S288C)
- Probable metalloprotease arx1 (65 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l17-a (20 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal export protein nmd3 (59 kDa, Protein from Saccharomyces cerevisiae S288C)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l3 (43 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l13-a (22 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l15-a (24 kDa, Protein from Saccharomyces cerevisiae S288C)
- 35s pre-ribosomal rna (1 MDa, RNA from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l21-a (18 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l31-a (12 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l36-a (11 kDa, Protein from Saccharomyces cerevisiae S288C)
- Ribosome biogenesis protein nsa2 (29 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l7-a (27 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l29 (6 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l16-a (22 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l18-a (20 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l12-a (17 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l30 (11 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l6-a (20 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l23-a (14 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l34-a (13 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l42-a (12 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l32 (14 kDa, Protein from Saccharomyces cerevisiae S288C)
- Eukaryotic translation initiation factor 6 (26 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l28 (16 kDa, Protein from Saccharomyces cerevisiae S288C)
- Ribosome biogenesis protein rlp24 (24 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l11-a (19 kDa, Protein from Saccharomyces cerevisiae S288C)
- 5.8s rrna (50 kDa, RNA from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l22-a (13 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l39 (6 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l8-a (28 kDa, Protein from Saccharomyces cerevisiae S288C)
- Upf0642 protein ybl028c (12 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l38 (8 kDa, Protein from Saccharomyces cerevisiae S288C)
- Unknown protein (14 kDa, Protein from Saccharomyces cerevisiae S288C ATCC 204508 / S288c)
- 5s rrna (38 kDa, RNA from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l20-a (20 kDa, Protein from Saccharomyces cerevisiae S288C)
- Pre-60s ribosomal particle in complex with drg1(afg2) (Complex from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l4-a (39 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l35-a (13 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l27-a (15 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l37-a (9 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l14-a (15 kDa, Protein from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l19-a (21 kDa, Protein from Saccharomyces cerevisiae S288C)
Structure of ribosomal complex bound with Rbg1/Tma46
Release date: Nov. 10, 2021
Resolution: 3.23 Å
EM Method: Single-particle
Fitted PDBs: 7rr5
Q-score: 0.437
Resolution: 3.23 Å
EM Method: Single-particle
Fitted PDBs: 7rr5
Q-score: 0.437
Zeng F, Li X, Pires-Alves M, Chen X, Hawk CW, Jin H
Cell Rep (2021) 37 pp. 109877-109877 [ Pubmed: 34706231 DOI: doi:10.1016/j.celrep.2021.109877 ]
Sample:
- 60s ribosomal protein l42-a (12 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s24 (15 kDa, Protein from Saccharomyces cerevisiae)
- Aspartic acid (133 Da, Ligand)
- Mrna (5 kDa, RNA from Saccharomyces cerevisiae)
- Rps3 isoform 1 (26 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l20-a (20 kDa, Protein from Saccharomyces cerevisiae)
- Rpl5 isoform 1 (33 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l22-a (13 kDa, Protein from Saccharomyces cerevisiae)
- A-trna (24 kDa, RNA from Saccharomyces cerevisiae)
- 60s ribosomal protein l30 (11 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l7-a (27 kDa, Protein from Saccharomyces cerevisiae)
- Rps29a isoform 1 (6 kDa, Protein from Saccharomyces cerevisiae)
- Ubiquitin-40s ribosomal protein s31 (17 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l17-a (20 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s4 (29 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l27 (15 kDa, Protein from Saccharomyces cerevisiae)
- P-trna (24 kDa, RNA from Saccharomyces cerevisiae)
- A-trna (Complex from Saccharomyces cerevisiae)
- 60s ribosomal protein l8-a (28 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s12 (15 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l15-a (24 kDa, Protein from Saccharomyces cerevisiae)
- Ribosomal complex with rbg1/tma46 (Complex from Saccharomyces cerevisiae)
- 40s ribosomal protein s21-a (9 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s11-b (17 kDa, Protein from Saccharomyces cerevisiae)
- Rps1a isoform 1 (28 kDa, Protein from Saccharomyces cerevisiae)
- Rpl29 isoform 1 (6 kDa, Protein from Saccharomyces cerevisiae)
- Rps15 isoform 1 (16 kDa, Protein from Saccharomyces cerevisiae)
- Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Saccharomyces cerevisiae)
- 5.8s rrna (50 kDa, RNA from Saccharomyces cerevisiae)
- Rpl38 isoform 1 (8 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l43-a (10 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l41-a (3 kDa, Protein from Saccharomyces cerevisiae)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l28 (16 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s10-a (12 kDa, Protein from Saccharomyces cerevisiae)
- Rbg1/tma46 (Complex from Saccharomyces cerevisiae)
- Rpl11b isoform 1 (19 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s18-b (17 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s6 (27 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l6 (20 kDa, Protein from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l26-a (14 kDa, Protein from Saccharomyces cerevisiae)
- Rpl24a isoform 1 (17 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l13 (22 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l31-a (12 kDa, Protein from Saccharomyces cerevisiae)
- Rps8a isoform 1 (22 kDa, Protein from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- Rps22a isoform 1 (14 kDa, Protein from Saccharomyces cerevisiae)
- Rps5p (25 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l39 (6 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l1 (17 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s13 (17 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l21-a (18 kDa, Protein from Saccharomyces cerevisiae)
- Rps20 isoform 1 (13 kDa, Protein from Saccharomyces cerevisiae)
- Rps25a isoform 1 (12 kDa, Protein from Saccharomyces cerevisiae)
- Eukaryotic translation initiation factor 5a (17 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l33-a (12 kDa, Protein from Saccharomyces cerevisiae)
- Rps2 isoform 1 (27 kDa, Protein from Saccharomyces cerevisiae)
- Rps28a isoform 1 (7 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s7 (21 kDa, Protein from Saccharomyces cerevisiae)
- P-trna (Complex from Saccharomyces cerevisiae)
- 40s ribosomal protein s16-a (15 kDa, Protein from Saccharomyces cerevisiae)
- 60s subunit (Complex from Saccharomyces cerevisiae)
- 40s ribosomal protein s19-a (15 kDa, Protein from Saccharomyces cerevisiae)
- 25s rrna (1 MDa, RNA from Saccharomyces cerevisiae)
- 60s ribosomal protein l35-a (13 kDa, Protein from Saccharomyces cerevisiae)
- Mrna (Complex from Saccharomyces cerevisiae)
- Rpp0 isoform 1 (33 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l14-a (15 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l9-a (21 kDa, Protein from Saccharomyces cerevisiae)
- 40s subunit (Complex from Saccharomyces cerevisiae)
- 60s ribosomal protein l16-a (22 kDa, Protein from Saccharomyces cerevisiae)
- 5s rrna (38 kDa, RNA from Saccharomyces cerevisiae)
- Rpl32 isoform 1 (14 kDa, Protein from Saccharomyces cerevisiae)
- 18s rrna (579 kDa, RNA from Saccharomyces cerevisiae)
- Translation machinery-associated protein 46 (39 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l34-a (13 kDa, Protein from Saccharomyces cerevisiae)
- Ribosome-interacting gtpase 1 (45 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l19-a (21 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s17-a (15 kDa, Protein from Saccharomyces cerevisiae)
- Eif5a (Complex from Saccharomyces cerevisiae)
- 40s ribosomal protein s23 (16 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s30 (7 kDa, Protein from Saccharomyces cerevisiae)
- Rpl12a isoform 1 (17 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l23-b (14 kDa, Protein from Saccharomyces cerevisiae)
- Ribosomal protein l37 (9 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l2-b (27 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l36-a (11 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s27-a (8 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s14-b (14 kDa, Protein from Saccharomyces cerevisiae)
- Rpl3 isoform 1 (43 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s0 (28 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l18-b (20 kDa, Protein from Saccharomyces cerevisiae)
- Rpl10 isoform 1 (25 kDa, Protein from Saccharomyces cerevisiae)
- Rps26b isoform 1 (13 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s9-a (22 kDa, Protein from Saccharomyces cerevisiae)
- Rpl4a isoform 1 (39 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l25 (15 kDa, Protein from Saccharomyces cerevisiae)
Mus musculus brain neocortex ribosome 60S bound to Ebp1
Release date: Sept. 30, 2020
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6swa
Q-score: 0.449
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6swa
Q-score: 0.449
Kraushar ML, Krupp F, Harnett D, Turko P, Ambrozkiewicz MC, Sprink T, Imami K, Gunnigmann M, Zinnall U, Vieira-Vieira CH, Schaub T, Munster-Wandowski A, Burger J, Borisova E, Yamamoto H, Rasin MR, Ohler U, Beule D, Mielke T, Tarabykin V, Landthaler M, Kramer G, Vida I, Selbach M, Spahn CMT
Mol Cell (2021) 81 pp. 304- [ DOI: doi:10.1016/j.molcel.2020.11.037 Pubmed: 33357414 ]
Sample:
- 60s ribosomal protein l11 (19 kDa, Protein from Mus musculus)
- 5.8s ribosomal rna (50 kDa, RNA from Mus musculus)
- 60s ribosomal protein l27a (16 kDa, Protein from Mus musculus)
- 60s ribosomal protein l6 (22 kDa, Protein from Mus musculus)
- 60s ribosomal protein l18a (20 kDa, Protein from Mus musculus)
- 60s ribosomal protein l29 (7 kDa, Protein from Mus musculus)
- 60s ribosomal protein l13 (23 kDa, Protein from Mus musculus)
- 60s ribosomal protein l40 (5 kDa, Protein from Mus musculus)
- 60s ribosomal protein l19 (22 kDa, Protein from Mus musculus)
- Mus musculus postnatal day 0 brain neocortex 80s ribosome bound to ebp1 (3 MDa, Complex from Mus musculus)
- 60s ribosomal protein l14 (16 kDa, Protein from Mus musculus)
- 60s ribosomal protein l7 (27 kDa, Protein from Mus musculus)
- 60s ribosomal protein l13a (22 kDa, Protein from Mus musculus)
- 60s ribosomal protein l22 (11 kDa, Protein from Mus musculus)
- Proliferation-associated protein 2g4 (39 kDa, Protein from Mus musculus)
- 60s ribosomal protein l8 (27 kDa, Protein from Mus musculus)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l3 (45 kDa, Protein from Mus musculus)
- 60s ribosomal protein l15 (24 kDa, Protein from Mus musculus)
- 60s ribosomal protein l35a (12 kDa, Protein from Mus musculus)
- 28s ribosomal rna (1 MDa, RNA from Mus musculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Mus musculus)
- 60s ribosomal protein l32 (15 kDa, Protein from Mus musculus)
- 60s ribosomal protein l38 (8 kDa, Protein from Mus musculus)
- 60s ribosomal protein l21 (18 kDa, Protein from Mus musculus)
- 60s ribosomal protein l30 (10 kDa, Protein from Mus musculus)
- 60s ribosomal protein l34 (12 kDa, Protein from Mus musculus)
- 60s ribosomal protein l4 (41 kDa, Protein from Mus musculus)
- 60s ribosomal protein l9 (21 kDa, Protein from Mus musculus)
- Ribosomal protein l26 (15 kDa, Protein from Mus musculus)
- 60s ribosomal protein l17 (17 kDa, Protein from Mus musculus)
- 60s ribosomal protein l24 (7 kDa, Protein from Mus musculus)
- 60s ribosomal protein l23a (13 kDa, Protein from Mus musculus)
- Zinc ion (65 Da, Ligand)
- 5s ribosomal rna (38 kDa, RNA from Mus musculus)
- 60s ribosomal protein l23 (13 kDa, Protein from Mus musculus)
- 60s ribosomal protein l36 (11 kDa, Protein from Mus musculus)
- 60s ribosomal protein l18 (21 kDa, Protein from Mus musculus)
- 60s ribosomal protein l5 (34 kDa, Protein from Mus musculus)
- 60s ribosomal protein l7a (26 kDa, Protein from Mus musculus)
- Ribosomal protein l37a (10 kDa, Protein from Mus musculus)
- 60s ribosomal protein l37 (9 kDa, Protein from Mus musculus)
- 60s ribosomal protein l31 (12 kDa, Protein from Mus musculus)
- Ribosomal protein l39 (6 kDa, Protein from Mus musculus)
- 60s ribosomal protein l28 (14 kDa, Protein from Mus musculus)
- 60s ribosomal protein l10 (24 kDa, Protein from Mus musculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Mus musculus)
- 60s ribosomal protein l35 (14 kDa, Protein from Mus musculus)
- Ribosomal protein l36a (12 kDa, Protein from Mus musculus)
McGilvray PT, Anghel SA, Sundaram A, Zhong F, Trnka MJ, Fuller JR, Hu H, Burlingame AL, Keenan RJ
eLife (2020) 9 [ Pubmed: 32820719 DOI: doi:10.7554/eLife.56889 ]
Sample:
- Translocon (Complex from Homo sapiens)
- 40s ribosomal protein s9 (Complex from Homo sapiens)
- 60s ribosomal protein l38 (Complex from Homo sapiens)
- 60s ribosomal protein l26 (Complex from Homo sapiens)
- 40s ribosomal protein s6 (Complex from Homo sapiens)
- 60s ribosomal protein l15 (Complex from Homo sapiens)
- 60s ribosomal protein l36a (Complex from Homo sapiens)
- 40s ribosomal protein s8 (Complex from Homo sapiens)
- 60s ribosomal protein l13 (Complex from Homo sapiens)
- 60s ribosomal protein l23 (Complex from Homo sapiens)
- 60s ribosomal protein l5 (Complex from Homo sapiens)
- 40s ribosomal protein s17 (Complex from Homo sapiens)
- 60s acidic ribosomal protein p0 (Complex from Homo sapiens)
- 60s ribosomal protein l6 (Complex from Homo sapiens)
- 60s acidic ribosomal protein p2 (Complex from Homo sapiens)
- 40s ribosomal protein s10 (Complex from Homo sapiens)
- 40s ribosomal protein s3 (Complex from Homo sapiens)
- 60s ribosomal protein l30 (Complex from Homo sapiens)
- 60s ribosomal protein l8 (Complex from Homo sapiens)
- 60s ribosomal protein l18a (Complex from Homo sapiens)
- 60s ribosomal protein l7a (Complex from Homo sapiens)
- 40s ribosomal protein s29 (Complex from Homo sapiens)
- 60s ribosomal protein l39 (Complex from Homo sapiens)
- 40s ribosomal protein s13 (Complex from Homo sapiens)
- 60s ribosomal protein l22 (Complex from Homo sapiens)
- 40s ribosomal protein s4, x isoform (Complex from Homo sapiens)
- 40s ribosomal protein s12 (Complex from Homo sapiens)
- 60s ribosomal protein l13a (Complex from Homo sapiens)
- 40s ribosomal protein s27-like (Complex from Homo sapiens)
- 40s ribosomal protein s24 (Complex from Homo sapiens)
- 60s ribosomal protein l19 (Complex from Homo sapiens)
- 60s ribosomal protein l36 (Complex from Homo sapiens)
- 60s ribosomal protein l35 (Complex from Homo sapiens)
- 60s ribosomal protein l37a (Complex from Homo sapiens)
- 60s ribosomal protein l4 (Complex from Homo sapiens)
- 40s ribosomal protein s19 (Complex from Homo sapiens)
- 40s ribosomal protein s3a (Complex from Homo sapiens)
- 60s ribosomal protein l32 (Complex from Homo sapiens)
- 60s ribosomal protein l3 (Complex from Homo sapiens)
- 40s ribosomal protein s21 (Complex from Homo sapiens)
- 40s ribosomal protein s11 (Complex from Homo sapiens)
- 40s ribosomal protein s25 (Complex from Homo sapiens)
- 40s ribosomal protein s15 (Complex from Homo sapiens)
- 60s ribosomal protein l23a (Complex from Homo sapiens)
- 60s ribosomal protein l35a (Complex from Homo sapiens)
- 40s ribosomal protein s14 (Complex from Homo sapiens)
- 60s acidic ribosomal protein p1 (Complex from Homo sapiens)
- 60s ribosomal protein l17 (Complex from Homo sapiens)
- Nomo-nicalin-tmem147 complex (Complex from Homo sapiens)
- 40s ribosomal protein s18 (Complex from Homo sapiens)
- 40s ribosomal protein s7 (Complex from Homo sapiens)
- 60s ribosomal protein l10a (Complex from Homo sapiens)
- 40s ribosomal protein sa (Complex from Homo sapiens)
- 40s ribosomal protein s23 (Complex from Homo sapiens)
- 60s ribosomal protein l31 (Complex from Homo sapiens)
- 40s ribosomal protein s16 (Complex from Homo sapiens)
- 60s ribosomal protein l24 (Complex from Homo sapiens)
- 60s ribosomal protein l14 (Complex from Homo sapiens)
- 60s ribosomal protein l18 (Complex from Homo sapiens)
- 60s subunit (2 MDa, Complex from Homo sapiens)
- 60s ribosomal protein l28 (Complex from Homo sapiens)
- 40s ribosomal protein s27 (Complex from Homo sapiens)
- 40s ribosomal protein s5 (Complex from Homo sapiens)
- 40s ribosomal protein s28 (Complex from Homo sapiens)
- Ccdc47 (Complex from Homo sapiens)
- 60s ribosomal protein l11 (Complex from Homo sapiens)
- 40s ribosomal protein s15a (Complex from Homo sapiens)
- 60s ribosomal protein l10 (Complex from Homo sapiens)
- Sec61 complex (70 kDa, Complex from Homo sapiens)
- 40s ribosomal protein s30 (Complex from Homo sapiens)
- 60s ribosomal protein l27a (Complex from Homo sapiens)
- 60s ribosomal protein l27 (Complex from Homo sapiens)
- 40s ribosomal protein s2 (Complex from Homo sapiens)
- 60s ribosomal protein l9 (Complex from Homo sapiens)
- 40s subunit (1 MDa, Complex from Homo sapiens)
- 60s ribosomal protein l12 (Complex from Homo sapiens)
- Native complex of a translating ribosome and a novel translocon containing the sec61 complex, tmem147, nomo, nicalin, ccdc47, and tmco1. (56 kDa, Complex from Homo sapiens)
- Tmco1 (Complex from Homo sapiens)
- 60s ribosomal protein l21 (Complex from Homo sapiens)
- 40s ribosomal protein s26 (Complex from Homo sapiens)
- 60s ribosomal protein l34 (Complex from Homo sapiens)
- 60s ribosomal protein l7 (Complex from Homo sapiens)
Release date: Sept. 2, 2020
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6w6l
Q-score: 0.291
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6w6l
Q-score: 0.291
McGilvray PT, Anghel SA, Sundaram A, Zhong F, Trnka MJ, Fuller JR, Hu H, Burlingame AL, Keenan RJ
eLife (2020) 9 [ Pubmed: 32820719 DOI: doi:10.7554/eLife.56889 ]
Sample:
- 40s ribosomal protein s9 (Complex from Homo sapiens)
- 60s ribosomal protein l38 (Complex from Homo sapiens)
- Nomo-nicalin-tmem147 complex (228 kDa, Complex from Homo sapiens)
- 60s ribosomal protein l26 (Complex from Homo sapiens)
- 40s ribosomal protein s6 (Complex from Homo sapiens)
- Native complex of a translating ribosome and a novel translocon containing the sec61 complex, tmem147, nomo, nicalin, ccdc47, and tmco1. (3 MDa, Complex from Homo sapiens)
- 60s ribosomal protein l15 (Complex from Homo sapiens)
- 60s ribosomal protein l36a (Complex from Homo sapiens)
- 40s ribosomal protein s8 (Complex from Homo sapiens)
- 60s ribosomal protein l13 (Complex from Homo sapiens)
- 60s ribosomal protein l23 (Complex from Homo sapiens)
- 60s ribosomal protein l5 (Complex from Homo sapiens)
- 40s ribosomal protein s17 (Complex from Homo sapiens)
- 60s acidic ribosomal protein p0 (Complex from Homo sapiens)
- 60s ribosomal protein l6 (Complex from Homo sapiens)
- 60s acidic ribosomal protein p2 (Complex from Homo sapiens)
- 40s ribosomal protein s10 (Complex from Homo sapiens)
- 40s ribosomal protein s3 (Complex from Homo sapiens)
- 60s ribosomal protein l30 (Complex from Homo sapiens)
- 60s ribosomal protein l8 (Complex from Homo sapiens)
- 60s ribosomal protein l18a (Complex from Homo sapiens)
- 60s ribosomal protein l7a (Complex from Homo sapiens)
- 40s ribosomal protein s29 (Complex from Homo sapiens)
- 60s ribosomal protein l39 (Complex from Homo sapiens)
- 40s ribosomal protein s13 (Complex from Homo sapiens)
- 60s ribosomal protein l22 (Complex from Homo sapiens)
- 40s ribosomal protein s4, x isoform (Complex from Homo sapiens)
- 40s ribosomal protein s12 (Complex from Homo sapiens)
- 60s ribosomal protein l13a (Complex from Homo sapiens)
- 40s ribosomal protein s27-like (Complex from Homo sapiens)
- 40s ribosomal protein s24 (Complex from Homo sapiens)
- 60s ribosomal protein l19 (Complex from Homo sapiens)
- 60s ribosomal protein l36 (Complex from Homo sapiens)
- 60s ribosomal protein l35 (Complex from Homo sapiens)
- 60s ribosomal protein l37a (Complex from Homo sapiens)
- 60s ribosomal protein l4 (Complex from Homo sapiens)
- 40s ribosomal protein s19 (Complex from Homo sapiens)
- 40s ribosomal protein s3a (Complex from Homo sapiens)
- 60s ribosomal protein l32 (Complex from Homo sapiens)
- 60s ribosomal protein l3 (Complex from Homo sapiens)
- 40s ribosomal protein s21 (Complex from Homo sapiens)
- 40s ribosomal protein s11 (Complex from Homo sapiens)
- 40s ribosomal protein s25 (Complex from Homo sapiens)
- Ccdc47 (56 kDa, Complex from Homo sapiens)
- 40s ribosomal protein s15 (Complex from Homo sapiens)
- 60s ribosomal protein l23a (Complex from Homo sapiens)
- 60s ribosomal protein l35a (Complex from Homo sapiens)
- 40s ribosomal protein s14 (Complex from Homo sapiens)
- 60s acidic ribosomal protein p1 (Complex from Homo sapiens)
- 60s ribosomal protein l17 (Complex from Homo sapiens)
- 40s ribosomal protein s18 (Complex from Homo sapiens)
- 40s ribosomal protein s7 (Complex from Homo sapiens)
- 60s ribosomal protein l10a (Complex from Homo sapiens)
- 40s ribosomal protein sa (Complex from Homo sapiens)
- 40s ribosomal protein s23 (Complex from Homo sapiens)
- 60s ribosomal protein l31 (Complex from Homo sapiens)
- 40s ribosomal protein s16 (Complex from Homo sapiens)
- 60s ribosomal protein l24 (Complex from Homo sapiens)
- Translocon (376 kDa, Complex from Homo sapiens)
- 60s ribosomal protein l14 (Complex from Homo sapiens)
- 60s ribosomal protein l18 (Complex from Homo sapiens)
- 60s subunit (2 MDa, Complex from Homo sapiens)
- 60s ribosomal protein l28 (Complex from Homo sapiens)
- 40s ribosomal protein s27 (Complex from Homo sapiens)
- 40s ribosomal protein s5 (Complex from Homo sapiens)
- 40s ribosomal protein s28 (Complex from Homo sapiens)
- 60s ribosomal protein l11 (Complex from Homo sapiens)
- Tmco1 (21 kDa, Complex from Homo sapiens)
- 40s ribosomal protein s15a (Complex from Homo sapiens)
- 60s ribosomal protein l10 (Complex from Homo sapiens)
- Sec61 complex (70 kDa, Complex from Homo sapiens)
- 40s ribosomal protein s30 (Complex from Homo sapiens)
- 60s ribosomal protein l27a (Complex from Homo sapiens)
- 60s ribosomal protein l27 (Complex from Homo sapiens)
- 40s ribosomal protein s2 (Complex from Homo sapiens)
- 60s ribosomal protein l9 (Complex from Homo sapiens)
- 40s subunit (1 MDa, Complex from Homo sapiens)
- 60s ribosomal protein l12 (Complex from Homo sapiens)
- 60s ribosomal protein l21 (Complex from Homo sapiens)
- 40s ribosomal protein s26 (Complex from Homo sapiens)
- 60s ribosomal protein l34 (Complex from Homo sapiens)
- 60s ribosomal protein l7 (Complex from Homo sapiens)
- 40s ribosomal protein s20 (Complex from Homo sapiens)
SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex
Release date: Aug. 19, 2020
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 6zmi
Q-score: 0.575
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 6zmi
Q-score: 0.575
Thoms M, Buschauer R, Ameismeier M, Koepke L, Denk T, Hirschenberger M, Kratzat H, Hayn M, Mackens-Kiani T, Cheng J, Straub JH, Sturzel CM, Frohlich T, Berninghausen O, Becker T, Kirchhoff F, Sparrer KMJ, Beckmann R
Science (2020) 369 pp. 1249-1255 [ DOI: doi:10.1126/science.abc8665 Pubmed: 32680882 ]
Sample:
- 5.8s ribosomal rna (50 kDa, RNA from Homo sapiens)
- Human lyar-80s ribosome complex (Complex from Homo sapiens)
- 40s ribosomal protein s29 (6 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l28 (15 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l35a (12 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15 (17 kDa, Protein from Homo sapiens)
- Cell growth-regulating nucleolar protein (43 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s30 (6 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l41 (3 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s24 (15 kDa, Protein from Homo sapiens)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l13a (23 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l10a (24 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l8 (28 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l36a (12 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s17 (15 kDa, Protein from Homo sapiens)
- Sars-cov-2 nsp1 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l9 (21 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l13 (24 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s25 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s27 (9 kDa, Protein from Homo sapiens)
- Trna (24 kDa, RNA from Homo sapiens)
- 60s ribosomal protein l37 (11 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l34 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s7 (22 kDa, Protein from Homo sapiens)
- Ubiquitin-40s ribosomal protein s27a (18 kDa, Protein from Homo sapiens)
- Sars-cov-2 nsp1 bound to the human lyar-80s ribosome complex (Complex)
- 40s ribosomal protein s20 (13 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l18a (20 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l12 (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l21 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s16 (16 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l37a (10 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l38 (8 kDa, Protein from Homo sapiens)
- 60s acidic ribosomal protein p0 (34 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s11 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s6 (28 kDa, Protein from Homo sapiens)
- 5s ribosomal rna (38 kDa, RNA from Homo sapiens)
- 60s ribosomal protein l23 (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l32 (15 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l19 (23 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l29 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s8 (24 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s14 (16 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l11 (20 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3a (30 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l27 (15 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l22 (14 kDa, Protein from Homo sapiens)
- 18s ribosomal rna (602 kDa, RNA from Homo sapiens)
- 40s ribosomal protein s26 (13 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l35 (14 kDa, Protein from Homo sapiens)
- 28s ribosomal rna (1 MDa, RNA from Homo sapiens)
- 40s ribosomal protein s5 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15a (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l23a (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l3 (46 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s10 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s21 (9 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l7a (30 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l4 (47 kDa, Protein from Homo sapiens)
- Proliferation-associated protein 2g4 (43 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l24 (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l15 (24 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s12 (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l18 (21 kDa, Protein from Homo sapiens)
- 40s ribosomal protein sa (32 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l5 (34 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l6 (32 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l31 (14 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3 (26 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l7 (29 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l26 (17 kDa, Protein from Homo sapiens)
- Non-structural protein 1 (19 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 60s ribosomal protein l39 (6 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s18 (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l17 (21 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l10-like (24 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l14 (23 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l27a (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s23 (15 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l30 (12 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s19 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s28 (7 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s2 (31 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s13 (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l36 (12 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s9 (22 kDa, Protein from Homo sapiens)
SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex
Release date: Aug. 19, 2020
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6zmo
Q-score: 0.519
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6zmo
Q-score: 0.519
Thoms M, Buschauer R, Ameismeier M, Koepke L, Denk T, Hirschenberger M, Kratzat H, Hayn M, Mackens-Kiani T, Cheng J, Straub JH, Sturzel CM, Frohlich T, Berninghausen O, Becker T, Kirchhoff F, Sparrer KMJ, Beckmann R
Science (2020) 369 pp. 1249-1255 [ DOI: doi:10.1126/science.abc8665 Pubmed: 32680882 ]
Sample:
- 5.8s ribosomal rna (50 kDa, RNA from Homo sapiens)
- 40s ribosomal protein s29 (6 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l28 (15 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l35a (12 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15 (17 kDa, Protein from Homo sapiens)
- Cell growth-regulating nucleolar protein (43 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s30 (6 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l41 (3 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s24 (15 kDa, Protein from Homo sapiens)
- Sars-cov-2 nsp1 bound to the human lyar-80s-eef1a ribosome complex (Complex)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l13a (23 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l10a (24 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l8 (28 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l36a (12 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s17 (15 kDa, Protein from Homo sapiens)
- Sars-cov-2 nsp1 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l9 (21 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l13 (24 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s25 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s27 (9 kDa, Protein from Homo sapiens)
- Trna (24 kDa, RNA from Homo sapiens)
- 60s ribosomal protein l37 (11 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l34 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s7 (22 kDa, Protein from Homo sapiens)
- Ubiquitin-40s ribosomal protein s27a (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s20 (13 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l18a (20 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l12 (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l21 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s16 (16 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l37a (10 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l38 (8 kDa, Protein from Homo sapiens)
- 60s acidic ribosomal protein p0 (34 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s11 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s6 (28 kDa, Protein from Homo sapiens)
- 5s ribosomal rna (38 kDa, RNA from Homo sapiens)
- 60s ribosomal protein l23 (14 kDa, Protein from Homo sapiens)
- Human lyar-80s-eef1a ribosome complex (Complex from Homo sapiens)
- 60s ribosomal protein l32 (15 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l19 (23 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l29 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s8 (24 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s14 (16 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l11 (20 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3a (30 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l27 (15 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l22 (14 kDa, Protein from Homo sapiens)
- Trna (28 kDa, RNA from Homo sapiens)
- 18s ribosomal rna (602 kDa, RNA from Homo sapiens)
- 40s ribosomal protein s26 (13 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l35 (14 kDa, Protein from Homo sapiens)
- 28s ribosomal rna (1 MDa, RNA from Homo sapiens)
- 40s ribosomal protein s5 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15a (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l23a (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l3 (46 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s10 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s21 (9 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l7a (30 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l4 (47 kDa, Protein from Homo sapiens)
- Proliferation-associated protein 2g4 (43 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l24 (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l15 (24 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s12 (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l18 (21 kDa, Protein from Homo sapiens)
- 40s ribosomal protein sa (32 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l5 (34 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l6 (32 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l31 (14 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3 (26 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l7 (29 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l26 (17 kDa, Protein from Homo sapiens)
- Non-structural protein 1 (19 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 60s ribosomal protein l39 (6 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s18 (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l17 (21 kDa, Protein from Homo sapiens)
- Elongation factor 1-alpha 1 (50 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l10-like (24 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l14 (23 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l27a (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s23 (15 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l30 (12 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s19 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s28 (7 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s2 (31 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s13 (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l36 (12 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s9 (22 kDa, Protein from Homo sapiens)