Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8bpo
Q-score: 0.549
Hopfler M, Absmeier E, Peak-Chew SY, Vartholomaiou E, Passmore LA, Gasic I, Hegde RS
Mol Cell (2023) 83 pp. 2290- [ Pubmed: 37295431 DOI: doi:10.1016/j.molcel.2023.05.020 ]
- 28s ribosomal rna (1 MDa, RNA from Oryctolagus cuniculus)
- Tubulin beta chain (7 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l13 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l36a-like (12 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27a (16 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l22 (14 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Ribosomal protein l26 (17 kDa, Protein from Oryctolagus cuniculus)
- Tetratricopeptide repeat protein 5 (54 kDa, Protein from Homo sapiens)
- Nascent polypeptide-associated complex subunit alpha n-terminal region (2 kDa, Protein from Oryctolagus cuniculus)
- Ubiquitin-60s ribosomal protein l40 (11 kDa, Protein from Oryctolagus cuniculus)
- S phase cyclin a-associated protein in the endoplasmic reticulum (159 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l36 (12 kDa, Protein from Oryctolagus cuniculus)
- 5.8s ribosomal rna (50 kDa, RNA from Oryctolagus cuniculus)
- Rabbit 80s ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (ttc5) and s-phase cyclin a associated protein residing in the er (scaper) (Complex from Oryctolagus cuniculus)
- 60s ribosomal protein l13a (23 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l12 (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l18 (21 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l18a (20 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l23 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l29 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l37a (10 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l21 (18 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l32 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l9 (21 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l11 (20 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l35a (12 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l4 (47 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l24 (17 kDa, Protein from Oryctolagus cuniculus)
- 60s acidic ribosomal protein p0 (34 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l39-like (6 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l30 (12 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l37 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_l18_c domain-containing protein (34 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l8 (28 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l14 (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_l23en domain-containing protein (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l35 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l19 (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein l3 (46 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l17 (21 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l6 (33 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l7a (36 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l34 (13 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l38 (8 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l28 (15 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l7 (29 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l31 (14 kDa, Protein from Oryctolagus cuniculus)
Structure of the TRAP complex with the Sec translocon and a translating ribosome
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8btk
Q-score: 0.362
Jaskolowski M, Jomaa A, Gamerdinger M, Shrestha S, Leibundgut M, Deuerling E, Ban N
Nat Struct Mol Biol (2023) 30 pp. 770-777 [ DOI: doi:10.1038/s41594-023-00990-0 Pubmed: 37170030 ]
- Ribosomal large subunit (60s) (Complex from Oryctolagus cuniculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- Us15 (17 kDa, Protein from Oryctolagus cuniculus)
- Sec61 translocon (Complex from canis lupus familiaris)
- P-site trna (24 kDa, RNA from Oryctolagus cuniculus)
- P-site trna (Complex from Oryctolagus cuniculus)
- Ribosomal protein s9 (predicted) (22 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l14 (23 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s19 (16 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul1 (24 kDa, Protein from Oryctolagus cuniculus)
- Translocon-associated protein subunit delta (18 kDa, Protein from Canis lupus familiaris)
- El43 (10 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s11 (18 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l28 (15 kDa, Protein from Oryctolagus cuniculus)
- El39 (6 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (12 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l22 (14 kDa, Protein from Oryctolagus cuniculus)
- El32 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l35 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l21 (18 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l9 (21 kDa, Protein from Oryctolagus cuniculus)
- Rack1 (35 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3a (30 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_l23en domain-containing protein (17 kDa, Protein from Oryctolagus cuniculus)
- Protein transport protein sec61 subunit alpha isoform 1 (52 kDa, Protein from Canis lupus familiaris)
- 60s ribosomal protein l19 (23 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l6 (33 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
- Us9 (19 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es17 (15 kDa, Protein from Oryctolagus cuniculus)
- Spermidine (145 Da, Ligand)
- Ul30,60s ribosomal protein l7 (29 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l11 (20 kDa, Protein from Oryctolagus cuniculus)
- Trap complex (Complex from canis lupus familiaris)
- Zinc ion (65 Da, Ligand)
- El42 (12 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s4 (29 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l23 (14 kDa, Protein from Oryctolagus cuniculus)
- Spermine (202 Da, Ligand)
- 40s ribosomal protein s21 (9 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l13a (23 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us10 (13 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l29 (26 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l8 (28 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s7 (47 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l24 (17 kDa, Protein from Oryctolagus cuniculus)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- L13 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal small subunit (ssu) (Complex from Oryctolagus cuniculus)
- Ubiquitin (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27a (16 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_l18_c domain-containing protein (34 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l12 (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s28 (7 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us19 (17 kDa, Protein from Oryctolagus cuniculus)
- Structure of the trap complex with the sec translocon and a translating ribosome (Complex from Oryctolagus cuniculus)
- Ribosomal protein l31 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s12 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s27a (18 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l7a (30 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l18a (20 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l34 (13 kDa, Protein from Oryctolagus cuniculus)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- 5.8s rrna (50 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s24 (15 kDa, Protein from Oryctolagus cuniculus)
- Signal sequence receptor subunit 3 (21 kDa, Protein from Canis lupus familiaris)
- Ribosomal protein l26 (17 kDa, Protein from Oryctolagus cuniculus)
- Nascent chain (2 kDa, Protein from Saccharomyces cerevisiae)
- Acetylamino-acetic acid (117 Da, Ligand)
- 40s ribosomal protein s18 (17 kDa, Protein from Oryctolagus cuniculus)
- 28s rrna (1 MDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s23 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s14 (16 kDa, Protein from Oryctolagus cuniculus)
- El30 (12 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l35a (12 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l37 (11 kDa, Protein from Oryctolagus cuniculus)
- Protein transport protein sec61 subunit gamma (7 kDa, Protein from Canis lupus familiaris)
- Ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s15a (14 kDa, Protein from Oryctolagus cuniculus)
- Protein transport protein sec61 subunit beta (9 kDa, Protein from Canis lupus familiaris)
- 18s rrna (603 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal_s5_c domain-containing protein,40s ribosomal protein s2 (31 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s6 (28 kDa, Protein from Oryctolagus cuniculus)
- Us14 (6 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l3 (46 kDa, Protein from Oryctolagus cuniculus)
- Es26 (13 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l4 (46 kDa, Protein from Oryctolagus cuniculus)
- Mrna (1 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein sa (32 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s5 (22 kDa, Protein from Oryctolagus cuniculus)
- Translocon-associated protein subunit alpha (32 kDa, Protein from Canis lupus familiaris)
- Translocon-associated protein subunit beta (20 kDa, Protein from Canis lupus familiaris)
- El38 (8 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es10 (18 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s30 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s acidic ribosomal protein p0 (34 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3 (31 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- Ul22 (21 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- 5s rrna (38 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s25 (13 kDa, Protein from Oryctolagus cuniculus)
Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-1 conformation
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7z3n
Q-score: 0.412
Kisonaite M, Wild K, Lapouge K, Gese GV, Kellner N, Hurt E, Sinning I
Nat Struct Mol Biol (2023) 30 pp. 670-677 [ DOI: doi:10.1038/s41594-023-00973-1 Pubmed: 37081320 ]
- 60s ribosomal protein l17-like protein (21 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s14-like protein (16 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l28-like protein (16 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Ribosomal protein el39 (6 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l25-like protein (17 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s16-like protein (15 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l27 (15 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s21-like protein (10 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s5-like protein (23 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s13-like protein (16 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- El38 (9 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Ribosomal protein l18-like protein (24 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l6 (22 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s8 (23 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- El24 (18 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Ribosomal protein l37 (10 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s11-like protein (18 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l44-like protein (12 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Putative ribosomal protein (20 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s9-like protein (22 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l21-like protein (18 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s17-like protein (16 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s15-like protein (17 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Ul6 (21 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l23-like protein (14 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s26 (13 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Putative guanine nucleotide-binding protein (35 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Putative ribosome associated protein (51 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Habp4_pai-rbp1 domain-containing protein (32 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s acidic ribosomal protein p0 (33 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l8 (29 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Ribosomal protein l19 (22 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l14-like protein (16 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l32-like protein (15 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s7 (23 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s2-like protein (28 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l13 (24 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l5-like protein (35 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Ribosomal protein s27-like protein (8 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Ribosomal protein l15 (24 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l33-like protein (12 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l10-like protein (25 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Dolichyl-diphosphooligosaccharide--protein glycotransferase (14 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- 5s rrna (38 kDa, RNA from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l12-like protein (17 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l36 (12 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l3-like protein (44 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s30 (6 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s4 (29 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l26-like protein (15 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s25 (10 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s23-like protein (15 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l29 (7 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l7-like protein (28 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s0 (31 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s3-like protein (27 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l16-like protein (23 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s1 (29 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s10-like protein (18 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l41-a (3 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s6 (27 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s12 (15 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 5.8s rrna (50 kDa, RNA from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l43-like protein (10 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Chaetomium thermophilum rac on 80s ribosome (Complex from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s24 (15 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 26s rrna (1 MDa, RNA from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l22-like protein (14 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Putative 60s ribosomal protein (15 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Ribosomal protein l34-like protein (13 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s27a-like protein (17 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Ribosomal protein us14 (6 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Nascent chain (2 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Putative heat shock protein (62 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s20-like protein (13 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 18s rrna (578 kDa, RNA from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l30-like protein (11 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l20 (20 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s19-like protein (17 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l4-like protein (39 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Putative ribosomal protein (17 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s28-like protein (7 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Magnesium ion (24 Da, Ligand)
- Putative 60s ribosomal protein (13 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Putative ribosomal protein (14 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l2-like protein (27 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s22-like protein (14 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-2 conformation
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7z3o
Q-score: 0.462
Kisonaite M, Wild K, Lapouge K, Gese GV, Kellner N, Hurt E, Sinning I
Nat Struct Mol Biol (2023) 30 pp. 670-677 [ DOI: doi:10.1038/s41594-023-00973-1 Pubmed: 37081320 ]
- 60s ribosomal protein l17-like protein (21 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s14-like protein (16 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l28-like protein (16 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Ribosomal protein el39 (6 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l25-like protein (17 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s16-like protein (15 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l27 (15 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s21-like protein (10 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s5-like protein (23 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s13-like protein (16 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- El38 (9 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Ribosomal protein l18-like protein (24 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l6 (22 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s8 (23 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- El24 (18 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Ribosomal protein l37 (10 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s11-like protein (18 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l44-like protein (12 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Putative ribosomal protein (20 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s9-like protein (22 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l21-like protein (18 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s17-like protein (16 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s15-like protein (17 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Ul6 (21 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l23-like protein (14 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s26 (13 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Putative guanine nucleotide-binding protein (35 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Putative ribosome associated protein (51 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Habp4_pai-rbp1 domain-containing protein (32 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s acidic ribosomal protein p0 (33 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l8 (29 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Ribosomal protein l19 (22 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l14-like protein (16 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l32-like protein (15 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s7 (23 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s2-like protein (28 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l13 (24 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l5-like protein (35 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Ribosomal protein s27-like protein (8 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Ribosomal protein l15 (24 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l33-like protein (12 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l10-like protein (25 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Dolichyl-diphosphooligosaccharide--protein glycotransferase (14 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- 5s rrna (38 kDa, RNA from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l12-like protein (17 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l36 (12 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l3-like protein (44 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s30 (6 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s4 (29 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l26-like protein (15 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s25 (10 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s23-like protein (15 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l29 (7 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l7-like protein (28 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s0 (31 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s3-like protein (27 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l16-like protein (23 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s1 (29 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s10-like protein (18 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l41-a (3 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s6 (27 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s12 (15 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 5.8s rrna (50 kDa, RNA from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l43-like protein (10 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Chaetomium thermophilum rac on 80s ribosome (Complex from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s24 (15 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 26s rrna (1 MDa, RNA from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l22-like protein (14 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Putative 60s ribosomal protein (15 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Ribosomal protein l34-like protein (13 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s27a-like protein (17 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Ribosomal protein us14 (6 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Nascent chain (2 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Putative heat shock protein (62 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s20-like protein (13 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 18s rrna (578 kDa, RNA from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l30-like protein (11 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l20 (20 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s19-like protein (17 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l4-like protein (39 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Putative ribosomal protein (17 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s28-like protein (7 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Magnesium ion (24 Da, Ligand)
- Putative 60s ribosomal protein (13 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- Putative ribosomal protein (14 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 60s ribosomal protein l2-like protein (27 kDa, Protein from Thermochaetoides thermophila DSM 1495)
- 40s ribosomal protein s22-like protein (14 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Thermophilic eukaryotic 80S ribosome at idle POST state
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7olc
Q-score: 0.538
Kisonaite M, Wild K, Lapouge K, Ruppert T, Sinning I
Nat Commun (2022) 13 pp. 476-476 [ Pubmed: 35079002 DOI: doi:10.1038/s41467-022-27967-9 ]
- 40s ribosomal protein s20-like protein (13 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Habp4_pai-rbp1 domain-containing protein (32 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l10-like protein (25 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l22-like protein (14 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l30-like protein (11 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s28-like protein (7 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s acidic ribosomal protein p0 (33 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Putative ribosomal protein (20 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l20 (20 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l24-like protein (18 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l14-like protein (16 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Ribosome-associated molecular chaperone ssb1 (67 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Ribosomal protein l37 (10 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s15-like protein (17 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l3-like protein (44 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l38-like protein (9 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l4-like protein (39 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- El39 (6 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s3-like protein (27 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Putative 60s ribosomal protein (13 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s19-like protein (17 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s8 (23 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s27a-like protein (17 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l29 (7 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Putative ribosomal protein (17 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l12-like protein (17 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 26s rrna (1 MDa, RNA from Chaetomium thermophilum var. thermophilum DSM 1495)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l44-like protein (12 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l36 (12 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l7-like protein (28 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s17-like protein (16 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s4 (29 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s14-like protein (16 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Ribosomal protein l18-like protein (24 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 5.8s rrna (50 kDa, RNA from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s21-like protein (10 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Putative guanine nucleotide-binding protein (35 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l21-like protein (18 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l26-like protein (15 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s9-like protein (22 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s25 (10 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l23-like protein (14 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s12 (15 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Chaetomium thermophilum 80s ribosome (Cell from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l41-a (3 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Ribosomal protein l34-like protein (13 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s7 (23 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l8 (29 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l32-like protein (15 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Ribosomal protein l15 (24 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Ubiquitin (14 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Ribosomal protein s27-like protein (8 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 5s rrna (38 kDa, RNA from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l5-like protein (35 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s22-like protein (14 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s0 (31 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l43-like protein (10 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l13 (24 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s1 (29 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s5-like protein (23 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l6 (22 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l16-like protein (23 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s24 (15 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Us14 (6 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s26 (13 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Ribosomal protein l19 (22 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l2-like protein (27 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l9-like protein (21 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l27 (15 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l28-like protein (16 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s6 (27 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s2-like protein (28 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l25-like protein (17 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Dolichyl-diphosphooligosaccharide--protein glycotransferase (14 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s11-like protein (18 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s16-like protein (15 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Water (18 Da, Ligand)
- 60s ribosomal protein l33-like protein (12 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Putative 60s ribosomal protein (15 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s13-like protein (16 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 18s rrna (578 kDa, RNA from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l17-like protein (21 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s23-like protein (15 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s10-like protein (18 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein s30 (6 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7old
Q-score: 0.458
Kisonaite M, Wild K, Lapouge K, Ruppert T, Sinning I
Nat Commun (2022) 13 pp. 476-476 [ Pubmed: 35079002 DOI: doi:10.1038/s41467-022-27967-9 ]
- 40s ribosomal protein s20-like protein (13 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Ribosomal protein el39 (6 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Habp4_pai-rbp1 domain-containing protein (32 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l10-like protein (25 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l22-like protein (14 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l30-like protein (11 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s28-like protein (7 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s acidic ribosomal protein p0 (33 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Putative ribosomal protein (20 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 26s rrna (1 MDa, RNA from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l20 (20 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l14-like protein (16 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Elongation factor 2 (93 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Ribosomal protein l37 (10 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s15-like protein (17 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l3-like protein (44 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l9-like protein (25 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l4-like protein (39 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l24-like protein (23 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s3-like protein (27 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Putative 60s ribosomal protein (13 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s19-like protein (17 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s8 (23 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s27a-like protein (17 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l16-like protein (22 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l29 (7 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Putative ribosomal protein (17 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l12-like protein (17 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l38-like protein (10 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l44-like protein (12 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l36 (12 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- 60s ribosomal protein l7-like protein (28 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Pe/e trna (24 kDa, RNA from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s17-like protein (16 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s4 (29 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s14-like protein (16 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Ribosomal protein l18-like protein (24 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 5.8s rrna (50 kDa, RNA from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s21-like protein (10 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Putative guanine nucleotide-binding protein (35 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l21-like protein (18 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l26-like protein (15 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s9-like protein (22 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s25 (10 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l23-like protein (14 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s12 (15 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Chaetomium thermophilum 80s ribosome (Cell from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l41-a (3 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Ribosomal protein l34-like protein (13 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s7 (23 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l8 (29 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l32-like protein (15 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Ribosomal protein l15 (24 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Ribosomal protein s27-like protein (8 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 5s rrna (38 kDa, RNA from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l5-like protein (35 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s22-like protein (14 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s0 (31 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l43-like protein (10 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l13 (24 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s1 (29 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s5-like protein (23 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l6 (22 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s24 (15 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Ubiquitin (14 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s26 (13 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Ribosomal protein l19 (22 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l2-like protein (27 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l27 (15 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l28-like protein (16 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s6 (27 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s2-like protein (28 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l25-like protein (17 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Dolichyl-diphosphooligosaccharide--protein glycotransferase (14 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s11-like protein (18 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s16-like protein (15 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l33-like protein (12 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Putative 60s ribosomal protein (15 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s13-like protein (16 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 18s rrna (578 kDa, RNA from Chaetomium thermophilum var. thermophilum DSM 1495)
- 60s ribosomal protein l17-like protein (21 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s23-like protein (15 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- 40s ribosomal protein s10-like protein (18 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein s30 (6 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
- Ribosomal protein us14 (6 kDa, Protein from Chaetomium thermophilum var. thermophilum DSM 1495)
Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7nwg
Q-score: 0.406
Powers KT, Stevenson-Jones F, Yadav SKN, Amthor B, Bufton JC, Borucu U, Shen D, Becker JP, Lavysh D, Hentze MW, Kulozik AE, Neu-Yilik G, Schaffitzel C
Nucleic Acids Res (2021) 49 pp. 7665-7679 [ Pubmed: 34157102 DOI: doi:10.1093/nar/gkab532 ]
- L18 (21 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
- A/p-site trna (23 kDa, RNA from Oryctolagus cuniculus)
- El14 (13 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- Sec61beta (1 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l14 (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l37 (11 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s21 (9 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s16 (17 kDa, Protein from Oryctolagus cuniculus)
- Ul22 (23 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3a (29 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein (24 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s20 (14 kDa, Protein from Oryctolagus cuniculus)
- P/e-site trna (24 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein us19 (17 kDa, Protein from Oryctolagus cuniculus)
- El29 (26 kDa, Protein from Oryctolagus cuniculus)
- S19 (16 kDa, Protein from Oryctolagus cuniculus)
- 60s acidic ribosomal protein p0 (34 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3 (31 kDa, Protein from Oryctolagus cuniculus)
- Us11 (18 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s23 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l5 (34 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l34 (14 kDa, Protein from Oryctolagus cuniculus)
- L8 (26 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el43 (12 kDa, Protein from Oryctolagus cuniculus)
- Ul4 (47 kDa, Protein from Oryctolagus cuniculus)
- Us14 (6 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
- Es31 (7 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s15a (15 kDa, Protein from Oryctolagus cuniculus)
- Ul15 (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (13 kDa, Protein from Oryctolagus cuniculus)
- El31 (12 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s10 (17 kDa, Protein from Oryctolagus cuniculus)
- Ul23 (17 kDa, Protein from Oryctolagus cuniculus)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- El32 (15 kDa, Protein from Oryctolagus cuniculus)
- Ul12 (21 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l19 (23 kDa, Protein from Oryctolagus cuniculus)
- El42 (16 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s9 (22 kDa, Protein from Oryctolagus cuniculus)
- El28 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us13 (17 kDa, Protein from Oryctolagus cuniculus)
- 18s ribosomal rna (586 kDa, RNA from Oryctolagus cuniculus)
- 60s ribosomal protein l6 (33 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l24-like protein (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es7 (21 kDa, Protein from Oryctolagus cuniculus)
- 5.8s ribosomal rna (48 kDa, RNA from Oryctolagus cuniculus)
- 60s ribosomal protein el40 (14 kDa, Protein from Oryctolagus cuniculus)
- 28s ribosomal rna (1 MDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s6 (30 kDa, Protein from Oryctolagus cuniculus)
- Mrna (5 kDa, RNA from Oryctolagus cuniculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- L22 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es25 (22 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s11 (18 kDa, Protein from Oryctolagus cuniculus)
- Ul3 (46 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- L13 (24 kDa, Protein from Oryctolagus cuniculus)
- Ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- El21 (18 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s17 (16 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein rack1 (34 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein sa (32 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us15 (17 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s24 (17 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s26 (13 kDa, Protein from Oryctolagus cuniculus)
- L9 (21 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- L38 (8 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s12 (13 kDa, Protein from Oryctolagus cuniculus)
- Blasticidin s (422 Da, Ligand)
- Ribosomal protein l26 (15 kDa, Protein from Oryctolagus cuniculus)
- El30 (12 kDa, Protein from Oryctolagus cuniculus)
- El39 (6 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l18a (20 kDa, Protein from Oryctolagus cuniculus)
- Ul30 (29 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s28 (7 kDa, Protein from Oryctolagus cuniculus)
- S4 (29 kDa, Protein from Oryctolagus cuniculus)
- El33 (12 kDa, Protein from Oryctolagus cuniculus)
- Mammalian pre-termination 80s ribosome with hybrid-p/e and -a/p site trnas bound by blasticidin s. (3 MDa, Complex from Oryctolagus cuniculus)
- 40s ribosomal protein s30 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s2 (27 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s5 (23 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- L7a (27 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l11 (20 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 7nwh
Q-score: 0.348
Powers KT, Stevenson-Jones F, Yadav SKN, Amthor B, Bufton JC, Borucu U, Shen D, Becker JP, Lavysh D, Hentze MW, Kulozik AE, Neu-Yilik G, Schaffitzel C
Nucleic Acids Res (2021) 49 pp. 7665-7679 [ DOI: doi:10.1093/nar/gkab532 Pubmed: 34157102 ]
- Ribosomal protein el43 (12 kDa, Protein from Oryctolagus cuniculus)
- Ul22 (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l14 (23 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l26 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s15a (15 kDa, Protein from Oryctolagus cuniculus)
- El39 (6 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s25 (13 kDa, Protein from Oryctolagus cuniculus)
- Ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s9 (22 kDa, Protein from Oryctolagus cuniculus)
- El31 (12 kDa, Protein from Oryctolagus cuniculus)
- Blasticidin s (422 Da, Ligand)
- 5.8s ribosomal rna (48 kDa, RNA from Oryctolagus cuniculus)
- El28 (15 kDa, Protein from Oryctolagus cuniculus)
- Ul12 (21 kDa, Protein from Oryctolagus cuniculus)
- El14 (14 kDa, Protein from Oryctolagus cuniculus)
- S7 (21 kDa, Protein from Oryctolagus cuniculus)
- Mrna (4 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l19 (23 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l6 (33 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
- 40s_sa_c domain-containing protein (32 kDa, Protein from Oryctolagus cuniculus)
- 28s ribosomal rna (1 MDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s17 (16 kDa, Protein from Oryctolagus cuniculus)
- L9 (21 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s11 (18 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s26 (13 kDa, Protein from Oryctolagus cuniculus)
- El29 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l32 (15 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s4 (29 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27a (16 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s27a (7 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l18a (20 kDa, Protein from Oryctolagus cuniculus)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- L38 (8 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- L7a (27 kDa, Protein from Oryctolagus cuniculus)
- Erf3a (48 kDa, Protein from Oryctolagus cuniculus)
- Epididymis tissue sperm binding protein li 3a (34 kDa, Protein from Oryctolagus cuniculus)
- Mammalian pre-termination 80s ribosome with erf1 and erf3 bound by blasticidin s. (3 MDa, Complex from Oryctolagus cuniculus)
- El33 (12 kDa, Protein from Oryctolagus cuniculus)
- Ul30 (29 kDa, Protein from Oryctolagus cuniculus)
- L22 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us19 (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l24-like protein (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l8 (27 kDa, Protein from Oryctolagus cuniculus)
- Ul3 (45 kDa, Protein from Oryctolagus cuniculus)
- El21 (18 kDa, Protein from Oryctolagus cuniculus)
- Us11 (16 kDa, Protein from Oryctolagus cuniculus)
- 18s ribosomal rna (573 kDa, RNA from Oryctolagus cuniculus)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- 40s ribosomal protein us12 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3a (29 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s2 (27 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s21 (9 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (12 kDa, Protein from Oryctolagus cuniculus)
- El30 (12 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l11 (20 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us15 (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l37 (11 kDa, Protein from Oryctolagus cuniculus)
- S29 (6 kDa, Protein from Oryctolagus cuniculus)
- Ul23 (17 kDa, Protein from Oryctolagus cuniculus)
- Es19 (16 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s28 (7 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s6 (30 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l13 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s5 (22 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s20 (13 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic peptide chain release factor subunit 1 (49 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us13 (17 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s24 (17 kDa, Protein from Oryctolagus cuniculus)
- El42 (16 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s12 (13 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s30 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l34 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3 (31 kDa, Protein from Oryctolagus cuniculus)
- 60s acidic ribosomal protein p0 (34 kDa, Protein from Oryctolagus cuniculus)
- Ul4 (42 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s16 (17 kDa, Protein from Oryctolagus cuniculus)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l5 (34 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein el40 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s10 (17 kDa, Protein from Oryctolagus cuniculus)
Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S
Resolution: 3.13 Å
EM Method: Single-particle
Fitted PDBs: 7nwi
Q-score: 0.5
Powers KT, Stevenson-Jones F, Yadav SKN, Amthor B, Bufton JC, Borucu U, Shen D, Becker JP, Lavysh D, Hentze MW, Kulozik AE, Neu-Yilik G, Schaffitzel C
Nucleic Acids Res (2021) 49 pp. 7665-7679 [ DOI: doi:10.1093/nar/gkab532 Pubmed: 34157102 ]
- 60s ribosomal protein l5 (34 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l7a (27 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l14 (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l26 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s11 (18 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s15a (15 kDa, Protein from Oryctolagus cuniculus)
- 5.8s ribosomal rna (50 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s9 (22 kDa, Protein from Oryctolagus cuniculus)
- Blasticidin s (422 Da, Ligand)
- El14 (13 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l4 (47 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s28 (7 kDa, Protein from Oryctolagus cuniculus)
- El28 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l22 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s23 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
- L13 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l19 (23 kDa, Protein from Oryctolagus cuniculus)
- El33 (12 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es7 (21 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s12 (13 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l6 (33 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l40 (14 kDa, Protein from Oryctolagus cuniculus)
- El31 (12 kDa, Protein from Oryctolagus cuniculus)
- L9 (21 kDa, Protein from Oryctolagus cuniculus)
- L38 (8 kDa, Protein from Oryctolagus cuniculus)
- L8 (26 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s26 (13 kDa, Protein from Oryctolagus cuniculus)
- Sec61beta (1 kDa, Protein from Oryctolagus cuniculus)
- L13a (23 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Ribosomal protein us14 (6 kDa, Protein from Oryctolagus cuniculus)
- S10_plectin domain-containing protein (11 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- El32 (15 kDa, Protein from Oryctolagus cuniculus)
- 28s ribosomal rna+blas (1 MDa, RNA from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (13 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein rack1 (34 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us19 (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l24-like protein (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein sa (32 kDa, Protein from Oryctolagus cuniculus)
- S14 (18 kDa, Protein from Oryctolagus cuniculus)
- Ul3 (46 kDa, Protein from Oryctolagus cuniculus)
- S19 (15 kDa, Protein from Oryctolagus cuniculus)
- Rps16 protein (17 kDa, Protein from Oryctolagus cuniculus)
- Low quality protein: 60s ribosomal protein l36a (16 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s25 (13 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3a (29 kDa, Protein from Oryctolagus cuniculus)
- El30 (12 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el39 (6 kDa, Protein from Oryctolagus cuniculus)
- Ul30 (29 kDa, Protein from Oryctolagus cuniculus)
- S4 (29 kDa, Protein from Oryctolagus cuniculus)
- S27a (7 kDa, Protein from Oryctolagus cuniculus)
- El21 (18 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l37 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el43 (10 kDa, Protein from Oryctolagus cuniculus)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal_l18e/l15p domain-containing protein (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s5 (23 kDa, Protein from Oryctolagus cuniculus)
- Ul23 (17 kDa, Protein from Oryctolagus cuniculus)
- L18a (20 kDa, Protein from Oryctolagus cuniculus)
- L17 (17 kDa, Protein from Oryctolagus cuniculus)
- S17 (14 kDa, Protein from Oryctolagus cuniculus)
- Ul15 (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us15 (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
- L12 (17 kDa, Protein from Oryctolagus cuniculus)
- 18s ribosomal rna (573 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal_s10 domain-containing protein (11 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l29 (26 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s24 (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- S21 (9 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s30 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l34 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s acidic ribosomal protein p0 (34 kDa, Protein from Oryctolagus cuniculus)
- Ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l11 (20 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3 (31 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us13 (16 kDa, Protein from Oryctolagus cuniculus)
- Mrna (3 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s2 (27 kDa, Protein from Oryctolagus cuniculus)
- P-site trna (24 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s6 (30 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- Mammalian pre-termination 80s ribosome with empty-a site bound by blasticidin s (3 MDa, Complex from Oryctolagus cuniculus)
Yeast Vms1-60S ribosomal subunit complex (post-state)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6r86
Q-score: 0.462
Su T, Izawa T, Thoms M, Yamashita Y, Cheng J, Berninghausen O, Hartl FU, Inada T, Neupert W, Beckmann R
Nature (2019) 570 pp. 538-542 [ Pubmed: 31189955 DOI: doi:10.1038/s41586-019-1307-z ]
- 60s ribosomal protein l15-a (24 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l12-a (16 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l34-a (12 kDa, Protein from Saccharomyces cerevisiae)
- 5s ribosomal rna (38 kDa, RNA from Saccharomyces cerevisiae)
- 60s ribosomal protein l10 (25 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l13-a (21 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l26-a (14 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l30 (10 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l25 (13 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l27-a (15 kDa, Protein from Saccharomyces cerevisiae)
- 60s acidic ribosomal protein p0 (21 kDa, Protein from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l38 (8 kDa, Protein from Saccharomyces cerevisiae)
- 5.8s ribosomal rna (50 kDa, RNA from Saccharomyces cerevisiae)
- 60s ribosomal protein l23-a (14 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l35-a (13 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l5 (33 kDa, Protein from Saccharomyces cerevisiae)
- 25s ribosomal rna (1 MDa, RNA from Saccharomyces cerevisiae)
- 60s ribosomal protein l36-a (11 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l32 (14 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l29 (6 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l8-a (25 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l14-a (14 kDa, Protein from Saccharomyces cerevisiae)
- Ribosome (Cellular component from Saccharomyces cerevisiae)
- 60s ribosomal protein l6-a (19 kDa, Protein from Saccharomyces cerevisiae)
- Vms1-60s ribosomal subunit complex (Complex)
- Eukaryotic translation initiation factor 6 (24 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l37-a (9 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l42-a (12 kDa, Protein from Saccharomyces cerevisiae)
- Protein vms1,protein vms1,protein vms1,protein vms1,protein vms1,protein vms1,protein vms1,protein vms1,protein vms1,protein vms1 (53 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l4-a (39 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l21-a (18 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l9-a (21 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l17-a (20 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l19-a (17 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l3 (43 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l33-a (12 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l16-a (22 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l43-a (9 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l11-b (19 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l18-a (20 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l24-a (7 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l39 (6 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l1-a (22 kDa, Protein from Saccharomyces cerevisiae)
- Vms1 (Complex from Saccharomyces cerevisiae)
- 60s ribosomal protein l7-a (25 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l2-a (27 kDa, Protein from Saccharomyces cerevisiae)
- Ubiquitin-60s ribosomal protein l40 (6 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l28 (16 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l20-a (20 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l31-a (12 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l22-a (11 kDa, Protein from Saccharomyces cerevisiae)