Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.
Resolution: 2.35 Å
EM Method: Single-particle
Fitted PDBs: 7qiw
Q-score: 0.686
Cottilli P, Itoh Y, Nobe Y, Petrov AS, Lison P, Taoka M, Amunts A
Plant Commun. (2022) 3 pp. 100342-100342 [ DOI: doi:10.1016/j.xplc.2022.100342 Pubmed: 35643637 ]
- 60s ribosomal protein el34 (13 kDa, Protein from Solanum lycopersicum)
- Kow domain-containing protein (16 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein l13 (23 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein el22 (13 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein l38 (8 kDa, Protein from Solanum lycopersicum)
- Thaliana 60s ribosomal protein l7 (28 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein l10 (24 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein l18a (21 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein el33 (12 kDa, Protein from Solanum lycopersicum)
- Ribosomal_l7ae domain-containing protein (12 kDa, Protein from Solanum lycopersicum)
- 50s ribosomal protein l22, chloroplastic (19 kDa, Protein from Solanum lycopersicum)
- 5.8s rrna (53 kDa, RNA from Solanum lycopersicum)
- Ribosomal protein l19 (24 kDa, Protein from Solanum lycopersicum)
- 25s rrna (1 MDa, RNA from Solanum lycopersicum)
- 60s ribosomal protein ul6 (22 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein l27 (15 kDa, Protein from Solanum lycopersicum)
- Ribosomal protein l15 (24 kDa, Protein from Solanum lycopersicum)
- Potassium ion (39 Da, Ligand)
- 60s ribosomal protein el21 (18 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein l29 (6 kDa, Protein from Solanum lycopersicum)
- Ribosomal_l23en domain-containing protein (17 kDa, Protein from Solanum lycopersicum)
- Ribosomal_l18_c domain-containing protein (34 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal subunit (Complex from Solanum lycopersicum)
- 60s ribosomal protein ul14 (15 kDa, Protein from Solanum lycopersicum)
- Similar to 60s ribosomal protein l35 (14 kDa, Protein from Solanum lycopersicum)
- Trna (589 Da, RNA from Solanum lycopersicum)
- Ribosomal_l18e/l15p domain-containing protein (20 kDa, Protein from Solanum lycopersicum)
- Ribosomal protein l3 (44 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein ul5 (20 kDa, Protein from Solanum lycopersicum)
- Water (18 Da, Ligand)
- 5s rrna (38 kDa, RNA from Solanum lycopersicum)
- Ribosomal protein l37 (10 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein l8 (28 kDa, Protein from Solanum lycopersicum)
- Magnesium ion (24 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Ribosomal_l14e domain-containing protein (15 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein el42 (12 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein el32 (15 kDa, Protein from Solanum lycopersicum)
- Ribos_l4_asso_c domain-containing protein (44 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein l36 (12 kDa, Protein from Solanum lycopersicum)
- Putative 60s ribosomal protein l27a-3-like (16 kDa, Protein from Solanum lycopersicum)
- Ribosomal_l28e domain-containing protein (16 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein el43 (10 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein el31 (13 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein ul13 (23 kDa, Protein from Solanum lycopersicum)
- Trash domain-containing protein (18 kDa, Protein from Solanum lycopersicum)
- Ribosomal_l7ae domain-containing protein (29 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein el39 (6 kDa, Protein from Solanum lycopersicum)
- Spermine (202 Da, Ligand)
- Ubiquitin-like domain-containing protein (14 kDa, Protein from Solanum lycopersicum)
- Ribosomal_l6e_n domain-containing protein (25 kDa, Protein from Solanum lycopersicum)
- Spermidine (145 Da, Ligand)