Neuronal RNA granules are ribosome complexes stalled at the pre-translocation state
Resolution: 2.86 Å
EM Method: Single-particle
Fitted PDBs: 7qgg
Q-score: 0.5
J Mol Biol (2022) 434 pp. 167801-167801 [ Pubmed: 36038000 DOI: doi:10.1016/j.jmb.2022.167801 ]
- 40s ribosomal protein s28 (7 kDa, Protein from Rattus norvegicus)
- Rna (157-mer) (50 kDa, RNA from Rattus norvegicus)
- 60s ribosomal protein l11 (20 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l17 (21 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l23 (14 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l8 (28 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s3a (30 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s17 (15 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l34 (13 kDa, Protein from Rattus norvegicus)
- Ubiquitin-like domain-containing protein (6 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s15a (14 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l6 (33 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l7 (30 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s29 (6 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s6 (28 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s20 (13 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l13a (23 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein sa (32 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s11 (18 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s2 (31 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Rattus norvegicus)
- Ala-ala-lys-ala (360 Da, Protein from Rattus norvegicus)
- 60s ribosomal protein l39 (6 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s12 (14 kDa, Protein from Rattus norvegicus)
- Rna (4803-mer) (1 MDa, RNA from Rattus norvegicus)
- 60s ribosomal protein l27a (16 kDa, Protein from Rattus norvegicus)
- Rna (76-mer) (24 kDa, RNA from Rattus norvegicus)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l18 (21 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s8 (24 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s23 (15 kDa, Protein from Rattus norvegicus)
- Ribosomal protein l19 (23 kDa, Protein from Rattus norvegicus)
- Rna (121-mer) (38 kDa, RNA from Rattus norvegicus)
- 60s ribosomal protein l21 (18 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l29 (17 kDa, Protein from Rattus norvegicus)
- Ribosomal protein l37 (11 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l27 (15 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l10 (24 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l41 (3 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l35a (12 kDa, Protein from Rattus norvegicus)
- Ubiquitin-40s ribosomal protein s27a (17 kDa, Protein from Rattus norvegicus)
- Rna (76-mer) (24 kDa, RNA from Rattus norvegicus)
- 40s ribosomal protein s21 (9 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l35 (14 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l9 (21 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l18a (20 kDa, Protein from Rattus norvegicus)
- Rna (5'-d(p*()p*()p*()p*())-r(p*up*up*ap*cp*gp*gp*cp*gp*gp*up*()p*()p*()p*()p*()p*())-3') (6 kDa, RNA from Rattus norvegicus)
- 40s ribosomal protein s26 (13 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l14 (23 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s27 (9 kDa, Protein from Rattus norvegicus)
- Ribosomal protein l15 (24 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l38 (8 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s9 (22 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s15 (17 kDa, Protein from Rattus norvegicus)
- Water (18 Da, Ligand)
- Rps16 protein (16 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l26 (17 kDa, Protein from Rattus norvegicus)
- Rna (1872-mer) (604 kDa, RNA from Rattus norvegicus)
- 60s ribosomal protein l10a (24 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l13 (24 kDa, Protein from Rattus norvegicus)
- Ribosome structure in the rat cortex-hippocampus derived neuronal rna granules. (Complex from Rattus norvegicus)
- 60s ribosomal protein l4 (47 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s18 (17 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s5 (22 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l36 (12 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l23a (17 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s10 (18 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l30 (12 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s7 (22 kDa, Protein from Rattus norvegicus)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l31 (14 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l7a (30 kDa, Protein from Rattus norvegicus)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l5 (34 kDa, Protein from Rattus norvegicus)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s19 (16 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s25 (13 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l37a (10 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s3 (26 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l3 (46 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s24 (15 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l32 (15 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s14 (16 kDa, Protein from Rattus norvegicus)
- 40s ribosomal protein s13 (17 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l24 (17 kDa, Protein from Rattus norvegicus)
- Ribosomal protein l36a (12 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l22 (14 kDa, Protein from Rattus norvegicus)
- 60s ribosomal protein l28 (15 kDa, Protein from Rattus norvegicus)
Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 6gq1
Q-score: 0.357
Pellegrino S, Demeshkina N, Mancera-Martinez E, Melnikov S, Simonetti A, Myasnikov A, Yusupov M, Yusupova G, Hashem Y
J Mol Biol (2018) 430 pp. 2677-2687 [ DOI: doi:10.1016/j.jmb.2018.06.006 Pubmed: 29886014 ]
- 60s ribosomal protein l38 (8 kDa, Protein from Baker's yeast)
- Ubiquitin-60s ribosomal protein l40 (6 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l16-a (22 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s17-b (14 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l22-a (11 kDa, Protein from Baker's yeast)
- [1r-(1.alpha.,3a.beta.,4.beta.,4a.beta.,7.beta.,7a.alpha.,8a.beta.)]8a-[(6-deoxy-4-o-methyl-beta-d-altropyranosyloxy)methyl]-4-formyl-4,4a,5,6,7,7a,8,8a-octahydro-7-methyl-3-(1-methylethyl)-1,4-methano-s-indacene-3a(1h)-carboxylic acid (494 Da, Ligand)
- 40s ribosomal protein s18-a (16 kDa, Protein from Baker's yeast)
- 80s ribosome (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l25 (13 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s27-a (8 kDa, Protein from Baker's yeast)
- Rna (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l8-a (25 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l2-a (27 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l39 (6 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s29-a (6 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l13-a (21 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l24-a (7 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s10-a (12 kDa, Protein from Baker's yeast)
- Saccharomyces cerevisiae s288c 35s pre-ribosomal rna (rdn37-1), miscrna (1 MDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ubiquitin-40s ribosomal protein s31 (4 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l30 (10 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l12-a (10 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l28 (16 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s14-b (13 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s28-a (7 kDa, Protein from Baker's yeast)
- 5s ribosomal rna (50 kDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l32 (14 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s8-a (22 kDa, Protein from Baker's yeast)
- 5.8s ribosomal rna (38 kDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l4-a (39 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l6-a (19 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s21-a (9 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s11-a (17 kDa, Protein from Baker's yeast)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s12 (13 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s1-a (24 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s9-a (21 kDa, Protein from Baker's yeast)
- Messenger rna (2 kDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l43-a (9 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l7-a (25 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l21-a (18 kDa, Protein from Baker's yeast)
- 60s acidic ribosomal protein p0 (20 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l17-a (20 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l36-a (11 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s13 (16 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s20 (12 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s0-a (22 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l37-a (9 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l3 (43 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s16-a (15 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s19-a (15 kDa, Protein from Baker's yeast)
- Elongation factor 2 (93 kDa, Protein from Baker's yeast)
- 80s ribosome in complex with mrna, trna and eef2 in presence of non-hydrolizable gtp (gmppcp) and anti-fungal drug (sordarin) (3 MDa, Complex)
- 40s ribosomal protein s15 (14 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s5 (22 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l42-a (12 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l34-a (12 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l29 (6 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l18-a (20 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s3 (24 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s2 (23 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s23-a (15 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s6-a (25 kDa, Protein from Baker's yeast)
- Transfer rna - phe (24 kDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l23-a (14 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l11-b (19 kDa, Protein from Baker's yeast)
- Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l15-a (24 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l20-a (20 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s7-a (21 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l31-a (12 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l33-a (12 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l26-a (14 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s22-a (14 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l41-b (3 kDa, Protein from Baker's yeast)
- 18s ribosomal rna (578 kDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l14-a (14 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s30-a (6 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s26-b (11 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s24-a (15 kDa, Protein from Baker's yeast)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- 60s ribosomal protein l9-a (21 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s4-a (29 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l5 (33 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l35-a (13 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l27-a (15 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l10 (25 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s25-a (8 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l19-a (21 kDa, Protein from Baker's yeast)
Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6gqb
Q-score: 0.386
Pellegrino S, Demeshkina N, Mancera-Martinez E, Melnikov S, Simonetti A, Myasnikov A, Yusupov M, Yusupova G, Hashem Y
J Mol Biol (2018) 430 pp. 2677-2687 [ DOI: doi:10.1016/j.jmb.2018.06.006 Pubmed: 29886014 ]
- 60s ribosomal protein l38 (8 kDa, Protein from Baker's yeast)
- 18s ribosomal rna (578 kDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l17-a (20 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l16-a (22 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l23-a (14 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s18-a (16 kDa, Protein from Baker's yeast)
- 80s ribosome (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l25 (13 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l8-a (25 kDa, Protein from Baker's yeast)
- Mrna (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l2-a (27 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l39 (6 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s29-a (6 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l13-a (21 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s10-a (12 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l29 (6 kDa, Protein from Baker's yeast)
- Ubiquitin-40s ribosomal protein s31 (4 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l28 (16 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s14-b (13 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l27-a (15 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s8-a (22 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l4-a (39 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s21-a (9 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l3 (43 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s11-a (17 kDa, Protein from Baker's yeast)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l30 (10 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s12 (13 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s9-a (21 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s1-a (24 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s27-a (8 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l43-a (9 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s15 (14 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l1-a (22 kDa, Protein from Baker's yeast)
- 60s acidic ribosomal protein p0 (20 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l32 (14 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l36-a (11 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s13 (16 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s20 (12 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l24-a (7 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s0-a (22 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l37-a (9 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s16-a (15 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s19-a (15 kDa, Protein from Baker's yeast)
- 5s ribosomal rna (38 kDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Tetrafluoroaluminate ion (102 Da, Ligand)
- [1r-(1.alpha.,3a.beta.,4.beta.,4a.beta.,7.beta.,7a.alpha.,8a.beta.)]8a-[(6-deoxy-4-o-methyl-beta-d-altropyranosyloxy)methyl]-4-formyl-4,4a,5,6,7,7a,8,8a-octahydro-7-methyl-3-(1-methylethyl)-1,4-methano-s-indacene-3a(1h)-carboxylic acid (494 Da, Ligand)
- 60s ribosomal protein l33-a (12 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l26-a (14 kDa, Protein from Baker's yeast)
- 80s ribosome in complex with mrna, trna and eef2 in presence of gdp, alf4 and anti-fungal drug (sordarin) (3 MDa, Complex)
- 40s ribosomal protein s5 (22 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l42-a (12 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l34-a (12 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l18-a (20 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l22-a (11 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s23-a (15 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s6-a (25 kDa, Protein from Baker's yeast)
- Transfer rna - phe (24 kDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l31-a (12 kDa, Protein from Baker's yeast)
- Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l15-a (24 kDa, Protein from Baker's yeast)
- Elongation factor 2 (93 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l20-a (20 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s7-a (21 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s26-b (11 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l6-a (19 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l21-a (18 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s22-a (14 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l41-b (3 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l11-b (19 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l14-a (14 kDa, Protein from Baker's yeast)
- Saccharomyces cerevisiae s288c 35s pre-ribosomal rna (rdn37-1), miscrna (1 MDa, RNA from Baker's yeast)
- 40s ribosomal protein s3 (24 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l12-a (10 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s30-a (6 kDa, Protein from Baker's yeast)
- Messenger rna (2 kDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s24-a (15 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s4-a (29 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l5 (33 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l7-a (25 kDa, Protein from Baker's yeast)
- 5.8s ribosomal rna (50 kDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s28-a (7 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s2 (23 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l35-a (13 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l9-a (21 kDa, Protein from Baker's yeast)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Ubiquitin-60s ribosomal protein l40 (6 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s17-b (14 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l10 (25 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s25-a (8 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l19-a (21 kDa, Protein from Baker's yeast)
Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 6gqv
Q-score: 0.378
Pellegrino S, Demeshkina N, Mancera-Martinez E, Melnikov S, Simonetti A, Myasnikov A, Yusupov M, Yusupova G, Hashem Y
J Mol Biol (2018) 430 pp. 2677-2687 [ DOI: doi:10.1016/j.jmb.2018.06.006 Pubmed: 29886014 ]
- 80s ribosome (Complex from Saccharomyces cerevisiae)
- 40s ribosomal protein s3 (24 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l27-a (15 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l17-a (20 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s1-a (24 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s4-a (29 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l25 (13 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s14-b (13 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l8-a (25 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s0-a (22 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s9-a (21 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l1-a (22 kDa, Protein from Baker's yeast)
- 5.8s ribosomal rna (50 kDa, RNA from Saccharomyces cerevisiae)
- 60s ribosomal protein l4-a (39 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s6-a (25 kDa, Protein from Baker's yeast)
- Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s26-b (11 kDa, Protein from Baker's yeast)
- Transfer rna - phe (24 kDa, RNA from Saccharomyces cerevisiae)
- 40s ribosomal protein s11-a (17 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s27-a (8 kDa, Protein from Baker's yeast)
- Ubiquitin-60s ribosomal protein l40 (6 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s19-a (15 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s15 (14 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s30-a (6 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s29-a (6 kDa, Protein from Baker's yeast)
- Ubiquitin-40s ribosomal protein s31 (4 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l12-a (10 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s8-a (22 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s23-a (15 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s7-a (21 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s28-a (7 kDa, Protein from Baker's yeast)
- 80s ribosome in complex with mrna, trna and eef2 in presence of non-hydrolyzable gtp (gmppcp) (Complex)
- 40s ribosomal protein s12 (13 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l19-a (21 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s13 (16 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l11-b (19 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s10-a (12 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s20 (12 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l41-b (3 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l22-a (11 kDa, Protein from Baker's yeast)
- Elongation factor 2 (92 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l28 (16 kDa, Protein from Baker's yeast)
- 18s ribosomal rna (578 kDa, RNA from Saccharomyces cerevisiae)
- 60s ribosomal protein l38 (8 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l16-a (22 kDa, Protein from Baker's yeast)
- Messenger rna (2 kDa, RNA from Saccharomyces cerevisiae)
- 60s ribosomal protein l2-a (27 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s21-a (9 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l32 (14 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l35-a (13 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l31-a (12 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l10 (25 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s2 (23 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l20-a (20 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l13-a (21 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l36-a (11 kDa, Protein from Baker's yeast)
- 60s acidic ribosomal protein p0 (20 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l5 (33 kDa, Protein from Baker's yeast)
- Zinc ion (65 Da, Ligand)
- 25s ribosomal rna (1 MDa, RNA from Saccharomyces cerevisiae)
- 60s ribosomal protein l18-a (20 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l6-a (19 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s17-b (14 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s18-a (16 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l23-a (14 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l30 (10 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l3 (43 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l7-a (25 kDa, Protein from Baker's yeast)
- 5s ribosomal rna (38 kDa, RNA from Saccharomyces cerevisiae)
- 40s ribosomal protein s16-a (15 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l9-a (21 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l26-a (14 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l14-a (14 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s5 (22 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l15-a (24 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l34-a (12 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s25-a (8 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l39 (6 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l24-a (7 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l42-a (12 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s24-a (15 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l33-a (12 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s22-a (14 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l21-a (18 kDa, Protein from Baker's yeast)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- 60s ribosomal protein l43-a (9 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l29 (6 kDa, Protein from Baker's yeast)
- Mrna (Complex from Saccharomyces cerevisiae)
- 60s ribosomal protein l37-a (9 kDa, Protein from Baker's yeast)