Mouse RPL39L integrated into the yeast 60S ribosomal subunit
Resolution: 2.15 Å
EM Method: Single-particle
Fitted PDBs: 8pfr
Q-score: 0.675
Banerjee A, Ataman M, Smialek MJ, Mookherjee D, Rabl J, Mironov A, Mues L, Enkler L, Coto-Llerena M, Schmidt A, Boehringer D, Piscuoglio S, Spang A, Mittal N, Zavolan M
Nucleic Acids Res (2024) 52 pp. 9028-9048 [ Pubmed: 39041433 DOI: doi:10.1093/nar/gkae630 ]
- 60s ribosomal protein l3 (43 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l22-a (13 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l13-a (22 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l23-a (14 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l27-a (15 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l30 (11 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l7-a (27 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l2-a (27 kDa, Protein from Saccharomyces cerevisiae)
- Mouse rpl39l in yeast 60s ribosomal subunit (1 MDa, Complex from Saccharomyces cerevisiae)
- Spermine (202 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Water (18 Da, Ligand)
- Spermidine (145 Da, Ligand)
- 60s ribosomal protein l33-a (12 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l15-a (24 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l36-a (11 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l14-a (15 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l32 (14 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l10 (25 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l4-a (39 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l28 (16 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l43-a (10 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l21-a (18 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l29 (6 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l31-a (12 kDa, Protein from Saccharomyces cerevisiae)
- Chloride ion (35 Da, Ligand)
- 25s rrna (1 MDa, RNA from Saccharomyces cerevisiae)
- 5s rrna (38 kDa, RNA from Saccharomyces cerevisiae)
- 60s ribosomal protein l42-a (12 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l5 (33 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l37-a (9 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l39-like (6 kDa, Protein from Mus musculus)
- 60s ribosomal protein l6-a (20 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l16-a (22 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l20-a (20 kDa, Protein from Saccharomyces cerevisiae)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l24-a (17 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l34-a (13 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l19-a (21 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l26-a (14 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l8-a (28 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l17-a (20 kDa, Protein from Saccharomyces cerevisiae)
- 5.8s rrna (50 kDa, RNA from Saccharomyces cerevisiae)
- 60s ribosomal protein l9-a (21 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l38 (8 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l18-a (20 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l11-a (19 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l35-a (13 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l25 (15 kDa, Protein from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
Mouse RPL39 integrated into the yeast 60S ribosomal subunit
Resolution: 2.15 Å
EM Method: Single-particle
Fitted PDBs: 8p8n
Q-score: 0.665
Banerjee A, Ataman M, Smialek MJ, Mookherjee D, Rabl J, Mironov A, Mues L, Enkler L, Coto-Llerena M, Schmidt A, Boehringer D, Piscuoglio S, Spang A, Mittal N, Zavolan M
Nucleic Acids Res (2024) 52 pp. 9028-9048 [ DOI: doi:10.1093/nar/gkae630 Pubmed: 39041433 ]
- 60s ribosomal protein l24-a (17 kDa, Protein from Saccharomyces cerevisiae)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l43-a (10 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l13-a (22 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l4-a (39 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l18-a (20 kDa, Protein from Saccharomyces cerevisiae)
- 25s rrna (1 MDa, RNA from Saccharomyces cerevisiae)
- 60s ribosomal protein l16-a (22 kDa, Protein from Saccharomyces cerevisiae)
- 5.8s rrna (50 kDa, RNA from Saccharomyces cerevisiae)
- 60s ribosomal protein l38 (8 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l25 (15 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l11-a (19 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l28 (16 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l29 (6 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l10 (25 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l19-a (21 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l33-a (12 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l27-a (15 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l30 (11 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l7-a (27 kDa, Protein from Saccharomyces cerevisiae)
- Mouse rpl39 integrated into yeast 60s ribosomal subunit (1 MDa, Complex from Saccharomyces cerevisiae)
- Chloride ion (35 Da, Ligand)
- 60s ribosomal protein l5 (33 kDa, Protein from Saccharomyces cerevisiae)
- Water (18 Da, Ligand)
- 60s ribosomal protein l22-a (13 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l36-a (11 kDa, Protein from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l15-a (24 kDa, Protein from Saccharomyces cerevisiae)
- Large ribosomal subunit protein el39 (6 kDa, Protein from Mus musculus)
- 60s ribosomal protein l6-a (20 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l23-a (14 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l37-a (9 kDa, Protein from Saccharomyces cerevisiae)
- 5s rrna (38 kDa, RNA from Saccharomyces cerevisiae)
- 60s ribosomal protein l42-a (12 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l3 (43 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l34-a (13 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l17-a (20 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l8-a (28 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l32 (14 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l35-a (13 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l21-a (18 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l9-a (21 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l20-a (20 kDa, Protein from Saccharomyces cerevisiae)
- Spermine (202 Da, Ligand)
- 60s ribosomal protein l26-a (14 kDa, Protein from Saccharomyces cerevisiae)
- Spermidine (145 Da, Ligand)
- 60s ribosomal protein l14-a (15 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l2-a (27 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l31-a (12 kDa, Protein from Saccharomyces cerevisiae)
Cryo-EM structure of 80S ribosome from mouse kidney
Resolution: 2.82 Å
EM Method: Single-particle
Fitted PDBs: 7cpu
Q-score: 0.58
Li H, Huo Y, He X, Yao L, Zhang H, Cui Y, Xiao H, Xie W, Zhang D, Wang Y, Zhang S, Tu H, Cheng Y, Guo Y, Cao X, Zhu Y, Jiang T, Guo X, Qin Y, Sha J
Nature (2022) 612 pp. 725-731 [ Pubmed: 36517592 DOI: doi:10.1038/s41586-022-05508-0 ]
- 40s ribosomal protein s26 (13 kDa, Protein from Mus musculus)
- 60s ribosomal protein l35a (12 kDa, Protein from Mus musculus)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Mus musculus)
- 60s ribosomal protein l32 (15 kDa, Protein from Mus musculus)
- 40s ribosomal protein s10 (18 kDa, Protein from Mus musculus)
- 60s ribosomal protein l23 (14 kDa, Protein from Mus musculus)
- 60s ribosomal protein l8 (28 kDa, Protein from Mus musculus)
- Mus musculus 18s ribosomal rna (603 kDa, RNA from Mus musculus)
- 60s ribosomal protein l15 (24 kDa, Protein from Mus musculus)
- Mus musculus 5s ribosomal rna (38 kDa, RNA from Mus musculus)
- Trna (24 kDa, RNA from Mus musculus)
- 40s ribosomal protein s19 (16 kDa, Protein from Mus musculus)
- 40s ribosomal protein s2 (31 kDa, Protein from Mus musculus)
- 60s ribosomal protein l9 (21 kDa, Protein from Mus musculus)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Mus musculus)
- 40s ribosomal protein s7 (22 kDa, Protein from Mus musculus)
- Mus musculus 5.8s ribosomal rna (50 kDa, RNA from Mus musculus)
- 60s ribosomal protein l3 (46 kDa, Protein from Mus musculus)
- 60s ribosomal protein l18a (20 kDa, Protein from Mus musculus)
- 60s ribosomal protein l38 (8 kDa, Protein from Mus musculus)
- 60s ribosomal protein l13a (23 kDa, Protein from Mus musculus)
- 60s ribosomal protein l22 (14 kDa, Protein from Mus musculus)
- 40s ribosomal protein s5 (22 kDa, Protein from Mus musculus)
- Mus musculus 28s ribosomal rna (1 MDa, RNA from Mus musculus)
- 40s ribosomal protein s25 (13 kDa, Protein from Mus musculus)
- 60s ribosomal protein l30 (12 kDa, Protein from Mus musculus)
- 40s ribosomal protein s29 (6 kDa, Protein from Mus musculus)
- 60s ribosomal protein l24 (17 kDa, Protein from Mus musculus)
- 40s ribosomal protein s15a (14 kDa, Protein from Mus musculus)
- 60s ribosomal protein l21 (18 kDa, Protein from Mus musculus)
- 60s ribosomal protein l31 (14 kDa, Protein from Mus musculus)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein sa (32 kDa, Protein from Mus musculus)
- 40s ribosomal protein s8 (24 kDa, Protein from Mus musculus)
- 40s ribosomal protein s21 (9 kDa, Protein from Mus musculus)
- 60s ribosomal protein l29 (17 kDa, Protein from Mus musculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Mus musculus)
- 60s ribosomal protein l18 (21 kDa, Protein from Mus musculus)
- 40s ribosomal protein s3a (29 kDa, Protein from Mus musculus)
- 60s ribosomal protein l28 (15 kDa, Protein from Mus musculus)
- 60s ribosomal protein l13 (24 kDa, Protein from Mus musculus)
- Mus musculus 80s ribosome from kidney (Complex from Mus musculus)
- 40s ribosomal protein s17 (15 kDa, Protein from Mus musculus)
- Ribosomal protein l39 (6 kDa, Protein from Mus musculus)
- 60s ribosomal protein l23a (17 kDa, Protein from Mus musculus)
- 40s ribosomal protein s13 (17 kDa, Protein from Mus musculus)
- Water (18 Da, Ligand)
- 40s ribosomal protein s15 (17 kDa, Protein from Mus musculus)
- 40s ribosomal protein s23 (15 kDa, Protein from Mus musculus)
- 40s ribosomal protein s24 (15 kDa, Protein from Mus musculus)
- 60s ribosomal protein l34 (13 kDa, Protein from Mus musculus)
- 60s ribosomal protein l14 (23 kDa, Protein from Mus musculus)
- 60s ribosomal protein l27a (16 kDa, Protein from Mus musculus)
- 60s ribosomal protein l37a (10 kDa, Protein from Mus musculus)
- 60s ribosomal protein l11 (20 kDa, Protein from Mus musculus)
- 60s ribosomal protein l17 (21 kDa, Protein from Mus musculus)
- 60s ribosomal protein l35 (14 kDa, Protein from Mus musculus)
- 40s ribosomal protein s30 (14 kDa, Protein from Mus musculus)
- 60s ribosomal protein l36a (12 kDa, Protein from Mus musculus)
- 40s ribosomal protein s11 (18 kDa, Protein from Mus musculus)
- 60s ribosomal protein l19 (23 kDa, Protein from Mus musculus)
- 60s ribosomal protein l6 (33 kDa, Protein from Mus musculus)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein s28 (7 kDa, Protein from Mus musculus)
- 40s ribosomal protein s3 (26 kDa, Protein from Mus musculus)
- 40s ribosomal protein s6 (28 kDa, Protein from Mus musculus)
- 60s ribosomal protein l5 (34 kDa, Protein from Mus musculus)
- 60s ribosomal protein l37 (11 kDa, Protein from Mus musculus)
- 40s ribosomal protein s16 (16 kDa, Protein from Mus musculus)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Mus musculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Mus musculus)
- 60s ribosomal protein l4 (47 kDa, Protein from Mus musculus)
- 40s ribosomal protein s14 (16 kDa, Protein from Mus musculus)
- 40s ribosomal protein s18 (17 kDa, Protein from Mus musculus)
- 40s ribosomal protein s20 (13 kDa, Protein from Mus musculus)
- 60s ribosomal protein l36 (12 kDa, Protein from Mus musculus)
- 60s ribosomal protein l26 (17 kDa, Protein from Mus musculus)
- 60s ribosomal protein l10 (24 kDa, Protein from Mus musculus)
- 40s ribosomal protein s9 (22 kDa, Protein from Mus musculus)
- 60s ribosomal protein l7 (31 kDa, Protein from Mus musculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Mus musculus)
- 60s ribosomal protein l7a (30 kDa, Protein from Mus musculus)
Cryo-EM structure of 80S ribosome from mouse testis
Resolution: 3.03 Å
EM Method: Single-particle
Fitted PDBs: 7cpv
Q-score: 0.534
Li H, Huo Y, He X, Yao L, Zhang H, Cui Y, Xiao H, Xie W, Zhang D, Wang Y, Zhang S, Tu H, Cheng Y, Guo Y, Cao X, Zhu Y, Jiang T, Guo X, Qin Y, Sha J
Nature (2022) 612 pp. 725-731 [ Pubmed: 36517592 DOI: doi:10.1038/s41586-022-05508-0 ]
- 40s ribosomal protein s26 (13 kDa, Protein from Mus musculus)
- 60s ribosomal protein l35a (12 kDa, Protein from Mus musculus)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Mus musculus)
- 60s ribosomal protein l32 (15 kDa, Protein from Mus musculus)
- 40s ribosomal protein s10 (18 kDa, Protein from Mus musculus)
- 60s ribosomal protein l23 (14 kDa, Protein from Mus musculus)
- 60s ribosomal protein l8 (28 kDa, Protein from Mus musculus)
- Mus musculus 18s ribosomal rna (603 kDa, RNA from Mus musculus)
- 60s ribosomal protein l15 (24 kDa, Protein from Mus musculus)
- Mus musculus 5s ribosomal rna (38 kDa, RNA from Mus musculus)
- 40s ribosomal protein s19 (16 kDa, Protein from Mus musculus)
- 40s ribosomal protein s2 (31 kDa, Protein from Mus musculus)
- 60s ribosomal protein l9 (21 kDa, Protein from Mus musculus)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Mus musculus)
- 40s ribosomal protein s7 (22 kDa, Protein from Mus musculus)
- Mus musculus 5.8s ribosomal rna (50 kDa, RNA from Mus musculus)
- 60s ribosomal protein l3 (46 kDa, Protein from Mus musculus)
- 60s ribosomal protein l18a (20 kDa, Protein from Mus musculus)
- 60s ribosomal protein l38 (8 kDa, Protein from Mus musculus)
- 60s ribosomal protein l13a (23 kDa, Protein from Mus musculus)
- 60s ribosomal protein l22 (14 kDa, Protein from Mus musculus)
- 40s ribosomal protein s5 (22 kDa, Protein from Mus musculus)
- Mus musculus 80s ribosome from testis (Complex from Mus musculus)
- Mus musculus 28s ribosomal rna (1 MDa, RNA from Mus musculus)
- 40s ribosomal protein s25 (13 kDa, Protein from Mus musculus)
- 60s ribosomal protein l30 (12 kDa, Protein from Mus musculus)
- 60s ribosomal protein l10-like (24 kDa, Protein from Mus musculus)
- 60s ribosomal protein l24 (17 kDa, Protein from Mus musculus)
- 40s ribosomal protein s29 (6 kDa, Protein from Mus musculus)
- 40s ribosomal protein s15a (14 kDa, Protein from Mus musculus)
- 60s ribosomal protein l21 (18 kDa, Protein from Mus musculus)
- 60s ribosomal protein l31 (14 kDa, Protein from Mus musculus)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein sa (32 kDa, Protein from Mus musculus)
- 40s ribosomal protein s8 (24 kDa, Protein from Mus musculus)
- 40s ribosomal protein s21 (9 kDa, Protein from Mus musculus)
- 60s ribosomal protein l29 (17 kDa, Protein from Mus musculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Mus musculus)
- 60s ribosomal protein l18 (21 kDa, Protein from Mus musculus)
- Met-trna (24 kDa, RNA from Mus musculus)
- 40s ribosomal protein s3a (29 kDa, Protein from Mus musculus)
- 60s ribosomal protein l28 (15 kDa, Protein from Mus musculus)
- 60s ribosomal protein l13 (24 kDa, Protein from Mus musculus)
- 40s ribosomal protein s17 (15 kDa, Protein from Mus musculus)
- 60s ribosomal protein l23a (17 kDa, Protein from Mus musculus)
- Ribosomal protein l39-like (6 kDa, Protein from Mus musculus)
- 40s ribosomal protein s13 (17 kDa, Protein from Mus musculus)
- Water (18 Da, Ligand)
- 40s ribosomal protein s15 (17 kDa, Protein from Mus musculus)
- 40s ribosomal protein s23 (15 kDa, Protein from Mus musculus)
- 40s ribosomal protein s24 (15 kDa, Protein from Mus musculus)
- 60s ribosomal protein l34 (13 kDa, Protein from Mus musculus)
- 60s ribosomal protein l14 (23 kDa, Protein from Mus musculus)
- 60s ribosomal protein l27a (16 kDa, Protein from Mus musculus)
- 60s ribosomal protein l37a (10 kDa, Protein from Mus musculus)
- 60s ribosomal protein l11 (20 kDa, Protein from Mus musculus)
- 60s ribosomal protein l17 (21 kDa, Protein from Mus musculus)
- 60s ribosomal protein l35 (14 kDa, Protein from Mus musculus)
- 40s ribosomal protein s30 (14 kDa, Protein from Mus musculus)
- 60s ribosomal protein l36a (12 kDa, Protein from Mus musculus)
- 40s ribosomal protein s11 (18 kDa, Protein from Mus musculus)
- 60s ribosomal protein l19 (23 kDa, Protein from Mus musculus)
- 60s ribosomal protein l6 (33 kDa, Protein from Mus musculus)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein s28 (7 kDa, Protein from Mus musculus)
- 40s ribosomal protein s3 (26 kDa, Protein from Mus musculus)
- 40s ribosomal protein s6 (28 kDa, Protein from Mus musculus)
- 60s ribosomal protein l5 (34 kDa, Protein from Mus musculus)
- 60s ribosomal protein l37 (11 kDa, Protein from Mus musculus)
- 40s ribosomal protein s16 (16 kDa, Protein from Mus musculus)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Mus musculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Mus musculus)
- 60s ribosomal protein l4 (47 kDa, Protein from Mus musculus)
- 40s ribosomal protein s14 (16 kDa, Protein from Mus musculus)
- 40s ribosomal protein s18 (17 kDa, Protein from Mus musculus)
- 40s ribosomal protein s20 (13 kDa, Protein from Mus musculus)
- 60s ribosomal protein l36 (12 kDa, Protein from Mus musculus)
- 60s ribosomal protein l26 (17 kDa, Protein from Mus musculus)
- 40s ribosomal protein s9 (22 kDa, Protein from Mus musculus)
- 60s ribosomal protein l7 (31 kDa, Protein from Mus musculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Mus musculus)
- 60s ribosomal protein l7a (30 kDa, Protein from Mus musculus)
80S ribosome from mouse bound to eEF2 (Class II)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7ls1
Q-score: 0.374
Smith PR, Loerch S, Kunder N, Stanowick AD, Lou TF, Campbell ZT
Nat Commun (2021) 12 pp. 6789-6789 [ DOI: doi:10.1038/s41467-021-27160-4 Pubmed: 34815424 ]
- 40s ribosomal protein s14 (16 kDa, Protein from Mouse)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Mouse)
- 40s ribosomal protein s15a (14 kDa, Protein from Mouse)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Mouse)
- 60s ribosomal protein l32 (15 kDa, Protein from Mouse)
- 40s ribosomal protein s23 (15 kDa, Protein from Mouse)
- 60s ribosomal protein l23 (14 kDa, Protein from Mouse)
- 60s ribosomal protein l26 (17 kDa, Protein from Mouse)
- 40s ribosomal protein s2 (31 kDa, Protein from Mouse)
- 40s ribosomal protein s3 (26 kDa, Protein from Mouse)
- 40s ribosomal protein s13 (17 kDa, Protein from Mouse)
- 40s ribosomal protein sa (32 kDa, Protein from Mouse)
- 60s ribosomal protein l19 (23 kDa, Protein from Mouse)
- 60s ribosomal protein l36 (12 kDa, Protein from Mouse)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Mouse)
- 40s ribosomal protein s12 (14 kDa, Protein from Mouse)
- Magnesium ion (24 Da, Ligand)
- Isoform 3 of plasminogen activator inhibitor 1 rna-binding protein (42 kDa, Protein from Mouse)
- 40s ribosomal protein s24 (15 kDa, Protein from Mouse)
- 40s ribosomal protein s8 (24 kDa, Protein from Mouse)
- 40s ribosomal protein s25 (13 kDa, Protein from Mouse)
- 60s ribosomal protein l12 (17 kDa, Protein from Mouse)
- 60s ribosomal protein l4 (47 kDa, Protein from Mouse)
- Ubiquitin-40s ribosomal protein s27a (17 kDa, Protein from Mouse)
- 60s ribosomal protein l23a (17 kDa, Protein from Mouse)
- 60s ribosomal protein l35a (12 kDa, Protein from Mouse)
- 60s ribosomal protein l14 (23 kDa, Protein from Mouse)
- Trna (24 kDa, RNA from Mus musculus)
- 40s ribosomal protein s26 (13 kDa, Protein from Mouse)
- 5s rrna (38 kDa, RNA from Mus musculus)
- 40s ribosomal protein s3a (29 kDa, Protein from Mouse)
- 40s ribosomal protein s7 (22 kDa, Protein from Mouse)
- 60s ribosomal protein l37a (10 kDa, Protein from Mouse)
- 40s ribosomal protein s18 (17 kDa, Protein from Mouse)
- 60s ribosomal protein l3 (46 kDa, Protein from Mouse)
- 80s ribosome from mous ebound to eef2 (4 MDa, Complex from Mus musculus)
- 60s ribosomal protein l29 (17 kDa, Protein from Mouse)
- 60s ribosomal protein l36a (12 kDa, Protein from Mouse)
- 40s ribosomal protein s19 (16 kDa, Protein from Mouse)
- 60s ribosomal protein l24 (17 kDa, Protein from Mouse)
- 28s rrna (1 MDa, RNA from Mus musculus)
- 60s ribosomal protein l7 (31 kDa, Protein from Mouse)
- 60s ribosomal protein l21 (18 kDa, Protein from Mouse)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- 40s ribosomal protein s17 (15 kDa, Protein from Mouse)
- 60s ribosomal protein l10-like (24 kDa, Protein from Mouse)
- 60s ribosomal protein l28 (15 kDa, Protein from Mouse)
- 60s ribosomal protein l13a (23 kDa, Protein from Mouse)
- 60s ribosomal protein l7a (30 kDa, Protein from Mouse)
- 60s ribosomal protein l27 (15 kDa, Protein from Mouse)
- 60s ribosomal protein l27a (16 kDa, Protein from Mouse)
- 60s ribosomal protein l8 (28 kDa, Protein from Mouse)
- Elongation factor 2 (95 kDa, Protein from Mouse)
- 60s ribosomal protein l17 (21 kDa, Protein from Mouse)
- 60s ribosomal protein l6 (33 kDa, Protein from Mouse)
- 40s ribosomal protein s27-like (9 kDa, Protein from Mouse)
- 60s ribosomal protein l18 (21 kDa, Protein from Mouse)
- Water (18 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- 28s rrna (603 kDa, RNA from Mus musculus)
- 40s ribosomal protein s11 (18 kDa, Protein from Mouse)
- 60s ribosomal protein l31 (14 kDa, Protein from Mouse)
- 60s ribosomal protein l35 (14 kDa, Protein from Mouse)
- 40s ribosomal protein s16 (16 kDa, Protein from Mouse)
- 60s ribosomal protein l10a (24 kDa, Protein from Mouse)
- 40s ribosomal protein s9 (22 kDa, Protein from Mouse)
- 40s ribosomal protein s20 (13 kDa, Protein from Mouse)
- 60s ribosomal protein l41 (3 kDa, Protein from Mouse)
- 60s acidic ribosomal protein p0 (34 kDa, Protein from Mouse)
- 60s ribosomal protein l18a (20 kDa, Protein from Mouse)
- 60s ribosomal protein l34 (13 kDa, Protein from Mouse)
- 40s ribosomal protein s15 (17 kDa, Protein from Mouse)
- 60s ribosomal protein l9 (21 kDa, Protein from Mouse)
- 40s ribosomal protein s28 (7 kDa, Protein from Mouse)
- 40s ribosomal protein s30 (14 kDa, Protein from Mouse)
- 60s ribosomal protein l15 (24 kDa, Protein from Mouse)
- 60s ribosomal protein l38 (8 kDa, Protein from Mouse)
- 60s ribosomal protein l5 (34 kDa, Protein from Mouse)
- 40s ribosomal protein s10 (18 kDa, Protein from Mouse)
- 60s ribosomal protein l39 (6 kDa, Protein from Mouse)
- 60s ribosomal protein l30 (12 kDa, Protein from Mouse)
- 5.8s rrna (55 kDa, RNA from Mus musculus)
- 60s ribosomal protein l22 (14 kDa, Protein from Mouse)
- 40s ribosomal protein s29 (6 kDa, Protein from Mouse)
- 40s ribosomal protein s21 (9 kDa, Protein from Mouse)
- 40s ribosomal protein s6 (28 kDa, Protein from Mouse)
- 60s ribosomal protein l11 (20 kDa, Protein from Mouse)
- 60s ribosomal protein l37 (11 kDa, Protein from Mouse)
- 60s ribosomal protein l13 (24 kDa, Protein from Mouse)
- 40s ribosomal protein s5 (22 kDa, Protein from Mouse)
80S ribosome from mouse bound to eEF2 (Class I)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7ls2
Q-score: 0.418
Smith PR, Loerch S, Kunder N, Stanowick AD, Lou TF, Campbell ZT
Nat Commun (2021) 12 pp. 6789-6789 [ DOI: doi:10.1038/s41467-021-27160-4 Pubmed: 34815424 ]
- 40s ribosomal protein s16 (16 kDa, Protein from Mus musculus)
- Water (18 Da, Ligand)
- 60s ribosomal protein l32 (15 kDa, Protein from Mus musculus)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Mus musculus)
- 40s ribosomal protein s17 (15 kDa, Protein from Mus musculus)
- 60s ribosomal protein l7 (31 kDa, Protein from Mus musculus)
- 60s ribosomal protein l27a (16 kDa, Protein from Mus musculus)
- 40s ribosomal protein s13 (17 kDa, Protein from Mus musculus)
- 40s ribosomal protein sa (32 kDa, Protein from Mus musculus)
- 40s ribosomal protein s28 (7 kDa, Protein from Mus musculus)
- 60s ribosomal protein l22 (14 kDa, Protein from Mus musculus)
- 40s ribosomal protein s23 (15 kDa, Protein from Mus musculus)
- 60s ribosomal protein l13a (23 kDa, Protein from Mus musculus)
- 5s rrna (38 kDa, RNA from Mus musculus)
- 40s ribosomal protein s30 (14 kDa, Protein from Mus musculus)
- 40s ribosomal protein s26 (13 kDa, Protein from Mus musculus)
- 60s ribosomal protein l30 (12 kDa, Protein from Mus musculus)
- 60s ribosomal protein l39 (6 kDa, Protein from Mus musculus)
- 60s ribosomal protein l28 (15 kDa, Protein from Mus musculus)
- 60s ribosomal protein l12 (17 kDa, Protein from Mus musculus)
- 60s ribosomal protein l4 (47 kDa, Protein from Mus musculus)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- 60s ribosomal protein l24 (17 kDa, Protein from Mus musculus)
- 60s ribosomal protein l10a (24 kDa, Protein from Mus musculus)
- 40s ribosomal protein s5 (22 kDa, Protein from Mus musculus)
- 40s ribosomal protein s15 (17 kDa, Protein from Mus musculus)
- 40s ribosomal protein s3a (29 kDa, Protein from Mus musculus)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l29 (17 kDa, Protein from Mus musculus)
- 60s ribosomal protein l36 (12 kDa, Protein from Mus musculus)
- Magnesium ion (24 Da, Ligand)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Mus musculus)
- 40s ribosomal protein s3 (26 kDa, Protein from Mus musculus)
- 60s ribosomal protein l36a (12 kDa, Protein from Mus musculus)
- 60s ribosomal protein l10-like (24 kDa, Protein from Mus musculus)
- 40s ribosomal protein s27-like (9 kDa, Protein from Mus musculus)
- 40s ribosomal protein s6 (28 kDa, Protein from Mus musculus)
- 60s ribosomal protein l19 (23 kDa, Protein from Mus musculus)
- 60s ribosomal protein l6 (33 kDa, Protein from Mus musculus)
- 60s ribosomal protein l17 (21 kDa, Protein from Mus musculus)
- 60s ribosomal protein l3 (46 kDa, Protein from Mus musculus)
- 60s ribosomal protein l23a (17 kDa, Protein from Mus musculus)
- 28s rrna (1 MDa, RNA from Mus musculus)
- 60s ribosomal protein l8 (28 kDa, Protein from Mus musculus)
- 5.8s rrna (50 kDa, RNA from Mus musculus)
- 60s ribosomal protein l13 (24 kDa, Protein from Mus musculus)
- 60s ribosomal protein l5 (34 kDa, Protein from Mus musculus)
- 60s ribosomal protein l7a (30 kDa, Protein from Mus musculus)
- Trna (24 kDa, RNA from Mus musculus)
- 40s ribosomal protein s8 (24 kDa, Protein from Mus musculus)
- 60s ribosomal protein l38 (8 kDa, Protein from Mus musculus)
- 40s ribosomal protein s25 (13 kDa, Protein from Mus musculus)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Mus musculus)
- Isoform 3 of plasminogen activator inhibitor 1 rna-binding protein (42 kDa, Protein from Mus musculus)
- 60s ribosomal protein l9 (21 kDa, Protein from Mus musculus)
- 60s ribosomal protein l35a (12 kDa, Protein from Mus musculus)
- 40s ribosomal protein s19 (16 kDa, Protein from Mus musculus)
- 60s ribosomal protein l18 (21 kDa, Protein from Mus musculus)
- 60s ribosomal protein l21 (18 kDa, Protein from Mus musculus)
- 40s ribosomal protein s29 (6 kDa, Protein from Mus musculus)
- 60s ribosomal protein l31 (14 kDa, Protein from Mus musculus)
- 40s ribosomal protein s14 (16 kDa, Protein from Mus musculus)
- 60s ribosomal protein l37 (11 kDa, Protein from Mus musculus)
- 40s ribosomal protein s24 (15 kDa, Protein from Mus musculus)
- 60s ribosomal protein l35 (14 kDa, Protein from Mus musculus)
- Ubiquitin-40s ribosomal protein s27a (17 kDa, Protein from Mus musculus)
- 40s ribosomal protein s10 (18 kDa, Protein from Mus musculus)
- 80s ribosome from mous ebound to eef2 (4 MDa, Complex from Mus musculus)
- 40s ribosomal protein s21 (9 kDa, Protein from Mus musculus)
- 60s ribosomal protein l18a (20 kDa, Protein from Mus musculus)
- 40s ribosomal protein s15a (14 kDa, Protein from Mus musculus)
- 40s ribosomal protein s2 (31 kDa, Protein from Mus musculus)
- 60s ribosomal protein l37a (10 kDa, Protein from Mus musculus)
- 60s ribosomal protein l34 (13 kDa, Protein from Mus musculus)
- 60s ribosomal protein l15 (24 kDa, Protein from Mus musculus)
- 40s ribosomal protein s7 (22 kDa, Protein from Mus musculus)
- 60s ribosomal protein l14 (23 kDa, Protein from Mus musculus)
- 60s acidic ribosomal protein p0 (34 kDa, Protein from Mus musculus)
- 40s ribosomal protein s11 (18 kDa, Protein from Mus musculus)
- 40s ribosomal protein s12 (14 kDa, Protein from Mus musculus)
- 40s ribosomal protein s9 (22 kDa, Protein from Mus musculus)
- 40s ribosomal protein s20 (13 kDa, Protein from Mus musculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Mus musculus)
- 18s rrna (603 kDa, RNA from Mus musculus)
- Elongation factor 2 (95 kDa, Protein from Mus musculus)
- 40s ribosomal protein s18 (17 kDa, Protein from Mus musculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Mus musculus)
- 60s ribosomal protein l23 (14 kDa, Protein from Mus musculus)
- 60s ribosomal protein l26 (17 kDa, Protein from Mus musculus)
- 60s ribosomal protein l11 (20 kDa, Protein from Mus musculus)
Mus musculus brain neocortex ribosome 60S bound to Ebp1
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6swa
Q-score: 0.449
Kraushar ML, Krupp F, Harnett D, Turko P, Ambrozkiewicz MC, Sprink T, Imami K, Gunnigmann M, Zinnall U, Vieira-Vieira CH, Schaub T, Munster-Wandowski A, Burger J, Borisova E, Yamamoto H, Rasin MR, Ohler U, Beule D, Mielke T, Tarabykin V, Landthaler M, Kramer G, Vida I, Selbach M, Spahn CMT
Mol Cell (2021) 81 pp. 304- [ Pubmed: 33357414 DOI: doi:10.1016/j.molcel.2020.11.037 ]
- 60s ribosomal protein l13a (22 kDa, Protein from Mus musculus)
- 60s ribosomal protein l23a (13 kDa, Protein from Mus musculus)
- 60s ribosomal protein l36 (11 kDa, Protein from Mus musculus)
- Ribosomal protein l39 (6 kDa, Protein from Mus musculus)
- 60s ribosomal protein l24 (7 kDa, Protein from Mus musculus)
- 60s ribosomal protein l38 (8 kDa, Protein from Mus musculus)
- 60s ribosomal protein l14 (16 kDa, Protein from Mus musculus)
- 60s ribosomal protein l30 (10 kDa, Protein from Mus musculus)
- 28s ribosomal rna (1 MDa, RNA from Mus musculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Mus musculus)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l41 (3 kDa, Protein from Mus musculus)
- 60s ribosomal protein l34 (12 kDa, Protein from Mus musculus)
- 60s ribosomal protein l35a (12 kDa, Protein from Mus musculus)
- 60s ribosomal protein l8 (27 kDa, Protein from Mus musculus)
- Ribosomal protein l26 (15 kDa, Protein from Mus musculus)
- Ribosomal protein l37a (10 kDa, Protein from Mus musculus)
- 60s ribosomal protein l18a (20 kDa, Protein from Mus musculus)
- 60s ribosomal protein l5 (34 kDa, Protein from Mus musculus)
- 60s ribosomal protein l7 (27 kDa, Protein from Mus musculus)
- 60s ribosomal protein l23 (13 kDa, Protein from Mus musculus)
- 60s ribosomal protein l37 (9 kDa, Protein from Mus musculus)
- Proliferation-associated protein 2g4 (39 kDa, Protein from Mus musculus)
- 60s ribosomal protein l15 (24 kDa, Protein from Mus musculus)
- 60s ribosomal protein l3 (45 kDa, Protein from Mus musculus)
- 60s ribosomal protein l7a (26 kDa, Protein from Mus musculus)
- 60s ribosomal protein l22 (11 kDa, Protein from Mus musculus)
- 60s ribosomal protein l19 (22 kDa, Protein from Mus musculus)
- 60s ribosomal protein l21 (18 kDa, Protein from Mus musculus)
- Mus musculus postnatal day 0 brain neocortex 80s ribosome bound to ebp1 (3 MDa, Complex from Mus musculus)
- 60s ribosomal protein l9 (21 kDa, Protein from Mus musculus)
- 60s ribosomal protein l17 (17 kDa, Protein from Mus musculus)
- 5s ribosomal rna (38 kDa, RNA from Mus musculus)
- 60s ribosomal protein l11 (19 kDa, Protein from Mus musculus)
- 60s ribosomal protein l4 (41 kDa, Protein from Mus musculus)
- 60s ribosomal protein l18 (21 kDa, Protein from Mus musculus)
- 60s ribosomal protein l10 (24 kDa, Protein from Mus musculus)
- 60s ribosomal protein l35 (14 kDa, Protein from Mus musculus)
- 60s ribosomal protein l40 (5 kDa, Protein from Mus musculus)
- 60s ribosomal protein l28 (14 kDa, Protein from Mus musculus)
- 60s ribosomal protein l32 (15 kDa, Protein from Mus musculus)
- 60s ribosomal protein l29 (7 kDa, Protein from Mus musculus)
- 60s ribosomal protein l31 (12 kDa, Protein from Mus musculus)
- 60s ribosomal protein l27a (16 kDa, Protein from Mus musculus)
- Magnesium ion (24 Da, Ligand)
- 5.8s ribosomal rna (50 kDa, RNA from Mus musculus)
- 60s ribosomal protein l6 (22 kDa, Protein from Mus musculus)
- Ribosomal protein l36a (12 kDa, Protein from Mus musculus)
- 60s ribosomal protein l13 (23 kDa, Protein from Mus musculus)