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sample_name:"60S ribosomal protein L7" AND author_orcid:"0000-0002-0299-9140"
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Dibekacin-added human 80S ribosome

Release date: Feb. 14, 2024
Resolution: 2.59 Å
EM Method: Single-particle
Fitted PDBs: 8ifd
Q-score: 0.539

Tomono J, Asano K, Chiashi T, Suzuki M, Igarashi M, Takahashi Y, Tanaka Y, Yokoyama T

J.Biochem. (2024) 175 pp. 587-598 [ Pubmed: 38227611 DOI: doi:10.1093/jb/mvae002 ]

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Arbekacin-added human 80S ribosome

Release date: Feb. 14, 2024
Resolution: 2.57 Å
EM Method: Single-particle
Fitted PDBs: 8ife
Q-score: 0.53

Tomono J, Asano K, Chiashi T, Suzuki M, Igarashi M, Takahashi Y, Tanaka Y, Yokoyama T

J.Biochem. (2024) 175 pp. 587-598 [ Pubmed: 38227611 DOI: doi:10.1093/jb/mvae002 ]

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Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Release date: Dec. 6, 2023
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 8jdj
Q-score: 0.594

Zhao X, Ma D, Ishiguro K, Saito H, Akichika S, Matsuzawa I, Mito M, Irie T, Ishibashi K, Wakabayashi K, Sakaguchi Y, Yokoyama T, Mishima Y, Shirouzu M, Iwasaki S, Suzuki T, Suzuki T

Cell (2023) 186 pp. 5517- [ Pubmed: 37992713 DOI: doi:10.1016/j.cell.2023.10.026 ]

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Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Release date: Dec. 6, 2023
Resolution: 2.26 Å
EM Method: Single-particle
Fitted PDBs: 8jdk
Q-score: 0.577

Zhao X, Ma D, Ishiguro K, Saito H, Akichika S, Matsuzawa I, Mito M, Irie T, Ishibashi K, Wakabayashi K, Sakaguchi Y, Yokoyama T, Mishima Y, Shirouzu M, Iwasaki S, Suzuki T, Suzuki T

Cell (2023) 186 pp. 5517- [ Pubmed: 37992713 DOI: doi:10.1016/j.cell.2023.10.026 ]

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Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)

Release date: Dec. 6, 2023
Resolution: 2.42 Å
EM Method: Single-particle
Fitted PDBs: 8jdl
Q-score: 0.573

Zhao X, Ma D, Ishiguro K, Saito H, Akichika S, Matsuzawa I, Mito M, Irie T, Ishibashi K, Wakabayashi K, Sakaguchi Y, Yokoyama T, Mishima Y, Shirouzu M, Iwasaki S, Suzuki T, Suzuki T

Cell (2023) 186 pp. 5517- [ Pubmed: 37992713 DOI: doi:10.1016/j.cell.2023.10.026 ]

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Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Release date: Dec. 6, 2023
Resolution: 2.67 Å
EM Method: Single-particle
Fitted PDBs: 8jdm
Q-score: 0.557

Zhao X, Ma D, Ishiguro K, Saito H, Akichika S, Matsuzawa I, Mito M, Irie T, Ishibashi K, Wakabayashi K, Sakaguchi Y, Yokoyama T, Mishima Y, Shirouzu M, Iwasaki S, Suzuki T, Suzuki T

Cell (2023) 186 pp. 5517- [ DOI: doi:10.1016/j.cell.2023.10.026 Pubmed: 37992713 ]

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Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Release date: May 29, 2019
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6ip5
Q-score: 0.356

Yokoyama T, Machida K, Iwasaki W, Shigeta T, Nishimoto M, Takahashi M, Sakamoto A, Yonemochi M, Harada Y, Shigematsu H, Shirouzu M, Tadakuma H, Imataka H, Ito T

Mol Cell (2019) 74 pp. 1205-1214.e8 [ DOI: doi:10.1016/j.molcel.2019.04.022 Pubmed: 31080011 ]

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Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Release date: May 29, 2019
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 6ip6
Q-score: 0.184

Yokoyama T, Machida K, Iwasaki W, Shigeta T, Nishimoto M, Takahashi M, Sakamoto A, Yonemochi M, Harada Y, Shigematsu H, Shirouzu M, Tadakuma H, Imataka H, Ito T

Mol Cell (2019) 74 pp. 1205-1214.e8 [ DOI: doi:10.1016/j.molcel.2019.04.022 Pubmed: 31080011 ]

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Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Release date: May 29, 2019
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6ip8
Q-score: 0.397

Yokoyama T, Machida K, Iwasaki W, Shigeta T, Nishimoto M, Takahashi M, Sakamoto A, Yonemochi M, Harada Y, Shigematsu H, Shirouzu M, Tadakuma H, Imataka H, Ito T

Mol Cell (2019) 74 pp. 1205-1214.e8 [ DOI: doi:10.1016/j.molcel.2019.04.022 Pubmed: 31080011 ]

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