S. thermodepolymerans KpsMT(E151Q)-KpsE in complex with ATP
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8tsh
Q-score: 0.499
Nature (2024) 628 pp. 901-909 [ Pubmed: 38570679 DOI: doi:10.1038/s41586-024-07248-9 ]
- Abc transporter atp-binding protein (26 kDa, Protein from Caldimonas thermodepolymerans)
- Abc transporter kpsmt(e151q) in complex with polysaccharide co-polymerase kpse in atp-bound state (Complex from Caldimonas thermodepolymerans)
- Transport permease protein (30 kDa, Protein from Caldimonas thermodepolymerans)
- Capsular biosynthesis protein (44 kDa, Protein from Caldimonas thermodepolymerans)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
S. thermodepolymerans KpsMT-KpsE in complex with ADP:AlF4-
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 8tsi
Q-score: 0.428
Nature (2024) 628 pp. 901-909 [ Pubmed: 38570679 DOI: doi:10.1038/s41586-024-07248-9 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Transport permease protein (30 kDa, Protein from Caldimonas thermodepolymerans)
- Capsular biosynthesis protein (44 kDa, Protein from Caldimonas thermodepolymerans)
- Abc transporter kpsmt in complex with polysaccharide co-polymerase kpse in adp:alf4- -bound state (Complex from Caldimonas thermodepolymerans)
- Abc transporter atp-binding protein (26 kDa, Protein from Caldimonas thermodepolymerans)
- Tetrafluoroaluminate ion (102 Da, Ligand)
S. thermodepolymerans KpsM-KpsE in Apo 2 state with rigid body fitted KpsT
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8tsl
Q-score: 0.444
Nature (2024) 628 pp. 901-909 [ Pubmed: 38570679 DOI: doi:10.1038/s41586-024-07248-9 ]
- Capsular biosynthesis protein (44 kDa, Protein from Caldimonas thermodepolymerans)
- Abc transporter atp-binding protein (26 kDa, Protein from Caldimonas thermodepolymerans)
- Abc transporter kpsmt in complex with polysaccharide co-polymerase kpse in apo 2 state (Complex from Caldimonas thermodepolymerans)
- Transport permease protein (30 kDa, Protein from Caldimonas thermodepolymerans)
S. thermodepolymerans KpsMT-KpsE Apo 1
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8tsw
Q-score: 0.476
Nature (2024) 628 pp. 901-909 [ Pubmed: 38570679 DOI: doi:10.1038/s41586-024-07248-9 ]
- Capsular biosynthesis protein (44 kDa, Protein from Caldimonas thermodepolymerans)
- Abc transporter atp-binding protein (26 kDa, Protein from Caldimonas thermodepolymerans)
- Transport permease protein (30 kDa, Protein from Caldimonas thermodepolymerans)
- Abc transporter kpsmt in complex with polysaccharide co-polymerase kpse in apo 1 state (Complex from Caldimonas thermodepolymerans)
S. thermodepolymerans KpsM-KpsE in Glycolipid 2 state with rigid body fitted KpsT
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8tt3
Q-score: 0.421
Nature (2024) 628 pp. 901-909 [ Pubmed: 38570679 DOI: doi:10.1038/s41586-024-07248-9 ]
- (2r,5s,8s)-2,5-dihydroxy-5,10-dioxo-8-[(undecanoyloxy)methyl]-4,6,9-trioxa-5lambda~5~-phosphahenicosan-1-yl 3-deoxy-alpha-l-altro-oct-2-ulopyranosidonic acid (816 Da, Ligand)
- Transport permease protein (30 kDa, Protein from Caldimonas thermodepolymerans)
- Capsular biosynthesis protein (44 kDa, Protein from Caldimonas thermodepolymerans)
- Abc transporter kpsmt in complex with polysaccharide co-polymerase kpse bound to the glycolipid in state 2 (Complex from Caldimonas thermodepolymerans)
- Abc transporter atp-binding protein (26 kDa, Protein from Caldimonas thermodepolymerans)
S. thermodepolymerans KpsM-KpsE in Glycolipid 1 state with rigid body fitted KpsT
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8tun
Q-score: 0.439
Nature (2024) 628 pp. 901-909 [ Pubmed: 38570679 DOI: doi:10.1038/s41586-024-07248-9 ]
- (2r,5s,8s)-2,5-dihydroxy-5,10-dioxo-8-[(undecanoyloxy)methyl]-4,6,9-trioxa-5lambda~5~-phosphahenicosan-1-yl 3-deoxy-alpha-l-altro-oct-2-ulopyranosidonic acid (816 Da, Ligand)
- Transport permease protein (30 kDa, Protein from Caldimonas thermodepolymerans)
- Capsular biosynthesis protein (44 kDa, Protein from Caldimonas thermodepolymerans)
- Abc transporter atp-binding protein (26 kDa, Protein from Caldimonas thermodepolymerans)
- Abc transporter kpsmt in complex with polysaccharide co-polymerase kpse bound to the glycolipid in state 1 (Complex from Caldimonas thermodepolymerans)
Structure of Mce1 transporter from Mycobacterium smegmatis in the absence of LucB (Map2)
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8fee
Q-score: 0.502
Chen J, Fruhauf A, Fan C, Ponce J, Ueberheide B, Bhabha G, Ekiert DC
Nature (2023) 620 pp. 445-452 [ Pubmed: 37495693 DOI: doi:10.1038/s41586-023-06366-0 ]
- Abc-transporter integral membrane protein (30 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Virulence factor mce family protein (58 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Virulence factor mce family protein (37 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Virulence factor mce family protein (42 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Conserved hypothetical integral membrane protein yrbe1a (27 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Mce1 lipid transporter composed of mce1 mce proteins (mce1abcdef) and an abc transporter (yrbe1a-b, 2 copies of mceg) (Complex from Mycolicibacterium smegmatis MC2 155)
- Mce-family protein mce1f (54 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Virulence factor mce family protein (43 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Unknown ligand (Ligand)
- Mce-family protein mce1c (54 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Abc transporter, atp-binding protein,green fluorescent protein chimera (71 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
Structure of Mce1 transporter from Mycobacterium smegmatis (Map0)
Resolution: 2.71 Å
EM Method: Single-particle
Fitted PDBs: 8fef
Q-score: 0.564
Chen J, Fruhauf A, Fan C, Ponce J, Ueberheide B, Bhabha G, Ekiert DC
Nature (2023) 620 pp. 445-452 [ Pubmed: 37495693 DOI: doi:10.1038/s41586-023-06366-0 ]
- Abc-transporter integral membrane protein (30 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Virulence factor mce family protein (58 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Virulence factor mce family protein (37 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Virulence factor mce family protein (42 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Conserved hypothetical integral membrane protein yrbe1a (27 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Mce1 lipid transporter composed of mce1 mce proteins (mce1abcdef) and an abc transporter (yrbe1a-b, 2 copies of mceg) (Complex from Mycolicibacterium smegmatis MC2 155)
- Mce-family protein mce1f (54 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Virulence factor mce family protein (43 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Unknown ligand (Ligand)
- Mce-family protein mce1c (54 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Abc transporter, atp-binding protein,green fluorescent protein chimera (71 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
CryoEM structure of the ABC transporter NosDFY complexed with nitrous oxide reductase NosZ
Resolution: 3.78 Å
EM Method: Single-particle
Fitted PDBs: 7qba
Q-score: 0.45
Muller C, Zhang L, Zipfel S, Topitsch A, Lutz M, Eckert J, Prasser B, Chami M, Lu W, Du J, Einsle O
Nature (2022) 608 pp. 626-631 [ DOI: doi:10.1038/s41586-022-05015-2 Pubmed: 35896743 ]
- Nitrous-oxide reductase (71 kDa, Protein from Pseudomonas stutzeri)
- Calcium ion (40 Da, Ligand)
- Probable abc transporter atp-binding protein nosf (34 kDa, Protein from Pseudomonas stutzeri)
- Probable abc transporter binding protein nosd (48 kDa, Protein from Pseudomonas stutzeri)
- Probable abc transporter permease protein nosy (29 kDa, Protein from Pseudomonas stutzeri)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Heteroheptamer complex of noszdfy (Complex from Pseudomonas stutzeri ATCC 14405 = CCUG 16156)
Cryo-EM structure of the A. baumannii MlaBDEF complex bound to APPNHP
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6z5u
Q-score: 0.003
Mann D, Fan J, Somboon K, Farrell DP, Muenks A, Tzokov SB, DiMaio F, Khalid S, Miller SI, Bergeron JRC
Commun Biol (2021) 4 pp. 817-817 [ Pubmed: 34188171 DOI: doi:10.1038/s42003-021-02318-4 ]
- Abc transporter atp-binding protein (30 kDa, Protein from Acinetobacter baumannii)
- Abc transporter permease (27 kDa, Protein from Acinetobacter baumannii)
- Anti-sigma factor antagonist (10 kDa, Protein from Acinetobacter baumannii)
- Mlabdef complex (Complex from Acinetobacter baumannii)
- Magnesium ion (24 Da, Ligand)
- Mce family protein (24 kDa, Protein from Acinetobacter baumannii)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)