Cryo-EM structure of LptB2FGC in complex with AMP-PNP
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6s8g
Q-score: 0.483
Tang X, Chang S, Luo Q, Zhang Z, Qiao W, Xu C, Zhang C, Niu Y, Yang W, Wang T, Zhang Z, Zhu X, Wei X, Dong C, Zhang X, Dong H
Nat Commun (2019) 10 pp. 4175-4175 [ Pubmed: 31519889 DOI: doi:10.1038/s41467-019-11977-1 ]
- Inner membrane protein yjgq (39 kDa, Protein from Shigella flexneri)
- Lptb2fgc (Complex from Shigella flexneri)
- Lipopolysaccharide abc transporter, atp-binding protein lptb (26 kDa, Protein from Shigella flexneri)
- Tetradecyl 4-o-alpha-d-glucopyranosyl-beta-d-glucopyranoside (538 Da, Ligand)
- Lps export abc transporter permease lptf (40 kDa, Protein from Shigella flexneri)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
Cryo-EM structure of LptB2FG in complex with LPS
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6s8h
Q-score: 0.47
Tang X, Chang S, Luo Q, Zhang Z, Qiao W, Xu C, Zhang C, Niu Y, Yang W, Wang T, Zhang Z, Zhu X, Wei X, Dong C, Zhang X, Dong H
Nat Commun (2019) 10 pp. 4175-4175 [ Pubmed: 31519889 DOI: doi:10.1038/s41467-019-11977-1 ]
- Inner membrane protein yjgq (39 kDa, Protein from Shigella flexneri)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Lipopolysaccharide abc transporter, atp-binding protein lptb (26 kDa, Protein from Shigella flexneri)
- Lauryl maltose neopentyl glycol (1 kDa, Ligand)
- Lptb2fg (Complex from Shigella flexneri)
- Lipopolysaccharide export system permease protein lptf (40 kDa, Protein from Shigella flexneri)
- 2-decyl-5,6-dimethoxy-3-methylcyclohexa-2,5-diene-1,4-dione (322 Da, Ligand)
- (2~{r},4~{r},5~{r},6~{r})-6-[(1~{r})-1,2-bis(oxidanyl)ethyl]-2-[(2~{r},4~{r},5~{r},6~{r})-6-[(1~{r})-1,2-bis(oxidanyl)ethyl]-5-[(2~{s},3~{s},4~{r},5~{r},6~{r})-6-[(1~{s})-1,2-bis(oxidanyl)ethyl]-4-[(2~{r},3~{s},4~{r},5~{s},6~{r})-6-[(1~{s})-2-[(2~{s},3~{s},4~{s},5~{s},6~{r})-6-[(1~{s})-1,2-bis(oxidanyl)ethyl]-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-1-oxidanyl-ethyl]-3,4-bis(oxidanyl)-5-phosphonooxy-oxan-2-yl]oxy-3-oxidanyl-5-phosphonooxy-oxan-2-yl]oxy-2-carboxy-2-[[(2~{r},3~{s},4~{r},5~{r},6~{r})-5-[[(3~{r})-3-dodecanoyloxytetradecanoyl]amino]-6-[[(2~{r},3~{s},4~{r},5~{r},6~{r})-3-oxidanyl-5-[[(3~{r})-3-oxidanyltetradecanoyl]amino]-4-[(3~{r})-3-oxidanyltetradecanoyl]oxy-6-phosphonooxy-oxan-2-yl]methoxy]-3-phosphonooxy-4-[(3~{r})-3-tetradecanoyloxytetradecanoyl]oxy-oxan-2-yl]methoxy]oxan-4-yl]oxy-4,5-bis(oxidanyl)oxane-2-carboxylic acid (2 kDa, Ligand)
Cryo-EM structure of LptB2FGC in complex with lipopolysaccharide
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6s8n
Q-score: 0.531
Tang X, Chang S, Luo Q, Zhang Z, Qiao W, Xu C, Zhang C, Niu Y, Yang W, Wang T, Zhang Z, Zhu X, Wei X, Dong C, Zhang X, Dong H
Nat Commun (2019) 10 pp. 4175-4175 [ Pubmed: 31519889 DOI: doi:10.1038/s41467-019-11977-1 ]
- Inner membrane protein yjgq (39 kDa, Protein from Shigella flexneri)
- Lptb2fgc (Complex from Shigella flexneri)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Lipopolysaccharide abc transporter, atp-binding protein lptb (26 kDa, Protein from Shigella flexneri)
- Lauryl maltose neopentyl glycol (1 kDa, Ligand)
- Lipopolysaccharide export system protein lptc (21 kDa, Protein from Shigella flexneri)
- Lipopolysaccharide fragment (1 kDa, Ligand)
- Lipopolysaccharide export system permease protein lptf (40 kDa, Protein from Shigella flexneri)
- 2-decyl-5,6-dimethoxy-3-methylcyclohexa-2,5-diene-1,4-dione (322 Da, Ligand)