ClpAP complex bound to ClpS N-terminal extension, class IIa
Resolution: 3.38 Å
EM Method: Single-particle
Fitted PDBs: 7uiv
Q-score: 0.416
Kim S, Fei X, Sauer RT, Baker TA
Nat Struct Mol Biol (2022) 29 pp. 1068-1079 [ DOI: doi:10.1038/s41594-022-00850-3 Pubmed: 36329286 ]
- Atp-dependent clp protease atp-binding subunit clpa (84 kDa, Protein from Escherichia coli)
- Atp-dependent clp protease proteolytic subunit (22 kDa, Protein from Escherichia coli)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Atp-dependent clp protease adapter protein clps (12 kDa, Protein from Escherichia coli)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Aaa+ protease complex clpap bound to adaptor protein clps and gfp (Complex from Escherichia coli)
ClpAP complex bound to ClpS N-terminal extension, class IIb
Resolution: 3.33 Å
EM Method: Single-particle
Fitted PDBs: 7uiw
Q-score: 0.387
Kim S, Fei X, Sauer RT, Baker TA
Nat Struct Mol Biol (2022) 29 pp. 1068-1079 [ DOI: doi:10.1038/s41594-022-00850-3 Pubmed: 36329286 ]
- Atp-dependent clp protease atp-binding subunit clpa (84 kDa, Protein from Escherichia coli)
- Atp-dependent clp protease proteolytic subunit (22 kDa, Protein from Escherichia coli)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Atp-dependent clp protease adapter protein clps (12 kDa, Protein from Escherichia coli)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Aaa+ protease complex clpap bound to adaptor protein clps and gfp (Complex from Escherichia coli)
ClpAP complex bound to ClpS N-terminal extension, class I
Resolution: 3.24 Å
EM Method: Single-particle
Fitted PDBs: 7uix
Q-score: 0.449
Kim S, Fei X, Sauer RT, Baker TA
Nat Struct Mol Biol (2022) 29 pp. 1068-1079 [ DOI: doi:10.1038/s41594-022-00850-3 Pubmed: 36329286 ]
- Atp-dependent clp protease atp-binding subunit clpa (84 kDa, Protein from Escherichia coli)
- Atp-dependent clp protease proteolytic subunit (22 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Atp-dependent clp protease adapter protein clps (12 kDa, Protein from Escherichia coli)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Aaa+ protease complex clpap bound to adaptor protein clps and gfp (Complex from Escherichia coli)
ClpAP complex bound to ClpS N-terminal extension, class IIc
Resolution: 3.24 Å
EM Method: Single-particle
Fitted PDBs: 7uiz
Q-score: 0.453
Kim S, Fei X, Sauer RT, Baker TA
Nat Struct Mol Biol (2022) 29 pp. 1068-1079 [ DOI: doi:10.1038/s41594-022-00850-3 Pubmed: 36329286 ]
- Atp-dependent clp protease atp-binding subunit clpa (84 kDa, Protein from Escherichia coli)
- Atp-dependent clp protease proteolytic subunit (22 kDa, Protein from Escherichia coli)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Atp-dependent clp protease adapter protein clps (12 kDa, Protein from Escherichia coli)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Aaa+ protease complex clpap bound to adaptor protein clps and gfp (Complex from Escherichia coli)
ClpAP complex bound to ClpS N-terminal extension, class IIIb
Resolution: 3.26 Å
EM Method: Single-particle
Fitted PDBs: 7uj0
Q-score: 0.445
Kim S, Fei X, Sauer RT, Baker TA
Nat Struct Mol Biol (2022) 29 pp. 1068-1079 [ DOI: doi:10.1038/s41594-022-00850-3 Pubmed: 36329286 ]
- Atp-dependent clp protease atp-binding subunit clpa (84 kDa, Protein from Escherichia coli)
- Atp-dependent clp protease proteolytic subunit (22 kDa, Protein from Escherichia coli)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Atp-dependent clp protease adapter protein clps (12 kDa, Protein from Escherichia coli)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Aaa+ protease complex clpap bound to adaptor protein clps and gfp (Complex from Escherichia coli)
ClpAP complex bound to ClpS N-terminal extension, class IIIa
Resolution: 3.22 Å
EM Method: Single-particle
Fitted PDBs: 7uiy
Q-score: 0.463
Kim S, Fei X, Sauer RT, Baker TA
Nat Struct Mol Biol (2022) 29 pp. 1068-1079 [ DOI: doi:10.1038/s41594-022-00850-3 Pubmed: 36329286 ]
- Atp-dependent clp protease atp-binding subunit clpa (84 kDa, Protein from Escherichia coli)
- Atp-dependent clp protease proteolytic subunit (22 kDa, Protein from Escherichia coli)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Atp-dependent clp protease adapter protein clps (12 kDa, Protein from Escherichia coli)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Aaa+ protease complex clpap bound to adaptor protein clps and gfp (Complex from Escherichia coli)
ClpAP Engaged2 State bound to RepA-GFP
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6w21
Q-score: 0.41
Lopez KE, Rizo AN, Tse E, Lin J, Scull NW, Thwin AC, Lucius AL, Shorter J, Southworth DR
Nat Struct Mol Biol (2020) 27 pp. 406-416 [ Pubmed: 32313240 DOI: doi:10.1038/s41594-020-0409-5 ]
- Atp-dependent clp protease proteolytic subunit (23 kDa, Protein from Escherichia coli)
- Atp-dependent clp protease atp-binding subunit clpa (Complex from Escherichia coli K-12)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Clpap (840 kDa, Complex)
- Repa, green fluorescent protein fusion (2 kDa, Protein from synthetic construct)
- Repa, green fluorescent protein fusion (Complex from synthetic construct)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Atp-dependent clp protease proteolytic subunit (e.c.3.4.21.92) (Complex from Escherichia coli)
- Atp-dependent clp protease atp-binding subunit clpa (84 kDa, Protein from Escherichia coli (strain K12))
ClpAP Engaged1 State bound to RepA-GFP
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 6w1z
Q-score: 0.473
Lopez KE, Rizo AN, Tse E, Lin J, Scull NW, Thwin AC, Lucius AL, Shorter J, Southworth DR
Nat Struct Mol Biol (2020) 27 pp. 406-416 [ Pubmed: 32313240 DOI: doi:10.1038/s41594-020-0409-5 ]
- Atp-dependent clp protease proteolytic subunit (23 kDa, Protein from Escherichia coli)
- Atp-dependent clp protease atp-binding subunit clpa (Complex from Escherichia coli K-12)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Clpap (840 kDa, Complex)
- Repa, green fluorescent protein fusion (2 kDa, Protein from synthetic construct)
- Repa, green fluorescent protein fusion (Complex from synthetic construct)
- Atp-dependent clp protease proteolytic subunit (Complex from Escherichia coli)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Atp-dependent clp protease atp-binding subunit clpa (84 kDa, Protein from Escherichia coli (strain K12))
ClpAP Disengaged State bound to RepA-GFP
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6w20
Q-score: 0.474
Lopez KE, Rizo AN, Tse E, Lin J, Scull NW, Thwin AC, Lucius AL, Shorter J, Southworth DR
Nat Struct Mol Biol (2020) 27 pp. 406-416 [ Pubmed: 32313240 DOI: doi:10.1038/s41594-020-0409-5 ]
- Atp-dependent clp protease proteolytic subunit (23 kDa, Protein from Escherichia coli)
- Repa(1-25)-gfp (Complex from synthetic construct)
- Atp-dependent clp protease atp-binding subunit clpa (Complex from Escherichia coli K-12)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Clpap (840 kDa, Complex)
- Repa, green fluorescent protein fusion (2 kDa, Protein from synthetic construct)
- Atp-dependent clp protease proteolytic subunit (Complex from Escherichia coli)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Atp-dependent clp protease atp-binding subunit clpa (84 kDa, Protein from Escherichia coli (strain K12))
ClpA Disengaged State bound to RepA-GFP (Focused Classification)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6w23
Q-score: 0.45
Lopez KE, Rizo AN, Tse E, Lin J, Scull NW, Thwin AC, Lucius AL, Shorter J, Southworth DR
Nat Struct Mol Biol (2020) 27 pp. 406-416 [ Pubmed: 32313240 DOI: doi:10.1038/s41594-020-0409-5 ]
- Atp-dependent clp protease atp-binding subunit clpa (Complex from Escherichia coli K-12)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Clpap (840 kDa, Complex)
- Repa, green fluorescent protein fusion (2 kDa, Protein from synthetic construct)
- Repa, green fluorescent protein fusion (Complex from synthetic construct)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Atp-dependent clp protease atp-binding subunit clpa (84 kDa, Protein from Escherichia coli (strain K12))