In situ PBS-PSII supercomplex from cyanobacterial Spirulina platensis
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8wql
Q-score: 0.264
You X, Zhang X, Xiao YN, Sun S, Sui SF
To Be Published
- Photosystem ii reaction center protein psb30 (4 kDa, Protein from Arthrospira sp. FACHB-439)
- Photosystem ii cp43 reaction center protein (51 kDa, Protein from Arthrospira sp. FACHB-439)
- Psbu (10 kDa, Protein from Arthrospira sp. FACHB-439)
- Fe (ii) ion (55 Da, Ligand)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- In situ pbs-psii supercomplex (Cell from Arthrospira platensis)
- Lrc1 (29 kDa, Protein from Arthrospira sp. FACHB-439)
- C-phycocyanin alpha subunit (17 kDa, Protein from Arthrospira sp. FACHB-439)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Allophycocyanin alpha chain (17 kDa, Protein from Arthrospira sp. FACHB-439)
- Photosystem ii reaction center protein j (3 kDa, Protein from Arthrospira sp. FACHB-439)
- Phycobilisome 7.8 kda linker polypeptide, allophycocyanin-associated, core (7 kDa, Protein from Arthrospira sp. FACHB-439)
- Psbq protein (18 kDa, Protein from Arthrospira sp. FACHB-439)
- Photosystem ii reaction center protein y (4 kDa, Protein from Arthrospira sp. FACHB-439)
- Photosystem ii reaction center protein m (4 kDa, Protein from Arthrospira sp. FACHB-439)
- Photosystem ii reaction center protein z (6 kDa, Protein from Arthrospira sp. FACHB-439)
- Phycocyanin beta subunit (18 kDa, Protein from Arthrospira sp. FACHB-439)
- Photosystem ii d2 protein (39 kDa, Protein from Arthrospira sp. FACHB-439)
- Ca-mn4-o5 cluster (339 Da, Ligand)
- Allophycocyanin beta-18 subunit (18 kDa, Protein from Arthrospira sp. FACHB-439)
- Bicarbonate ion (61 Da, Ligand)
- Lpp1 (4 kDa, Protein from Arthrospira sp. FACHB-439)
- Pheophytin a (871 Da, Ligand)
- Photosystem ii reaction center protein l (4 kDa, Protein from Arthrospira sp. FACHB-439)
- Photosystem ii extrinsic protein o (30 kDa, Protein from Arthrospira sp. FACHB-439)
- Cytochrome b559 subunit beta (4 kDa, Protein from Arthrospira sp. FACHB-439)
- Photosystem ii reaction center protein i (4 kDa, Protein from Arthrospira sp. FACHB-439)
- Lpp2 (15 kDa, Protein from Arthrospira sp. FACHB-439)
- Lcm (102 kDa, Protein from Arthrospira sp. FACHB-439)
- Chlorophyll a (893 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Photosystem ii reaction center protein h (7 kDa, Protein from Arthrospira sp. FACHB-439)
- Photosystem ii extrinsic protein v (18 kDa, Protein from Arthrospira sp. FACHB-439)
- Chloride ion (35 Da, Ligand)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
- Photosystem ii reaction center protein k (4 kDa, Protein from Arthrospira sp. FACHB-439)
- Calcium ion (40 Da, Ligand)
- Allophycocyanin-b alpha subunit (18 kDa, Protein from Arthrospira sp. FACHB-439)
- Phycocyanobilin (588 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Allophycocyanin beta chain (17 kDa, Protein from Arthrospira sp. FACHB-439)
- Beta-carotene (536 Da, Ligand)
- Cytochrome b559 subunit alpha (9 kDa, Protein from Arthrospira sp. FACHB-439)
- Photosystem ii reaction center protein x (5 kDa, Protein from Arthrospira sp. FACHB-439)
- Photosystem ii cp47 reaction center protein (56 kDa, Protein from Arthrospira sp. FACHB-439)
- Photosystem ii reaction center protein t (3 kDa, Protein from Arthrospira sp. FACHB-439)
- Photosystem ii protein d1 (39 kDa, Protein from Arthrospira sp. FACHB-439)
Bottom cylinder of high-resolution phycobilisome quenched by OCP (local refinement)
Resolution: 2.0 Å
EM Method: Single-particle
Fitted PDBs: 8to2
Q-score: 0.592
Sauer PV, Cupellini L, Sutter M, Bondanza M, Dominguez Martin MA, Kirst H, Bina D, Koh AF, Kotecha A, Greber BJ, Nogales E, Polivka T, Mennucci B, Kerfeld CA
Sci Adv (2024) 10 pp. eadk7535-eadk7535 [ Pubmed: 38578996 DOI: doi:10.1126/sciadv.adk7535 ]
- Allophycocyanin beta chain (17 kDa, Protein from Synechocystis sp. PCC 6803)
- Translation initiation factor if-2 (12 kDa, Protein from Synechocystis sp. PCC 6803)
- Orange carotenoid-binding protein (34 kDa, Protein from Synechocystis sp. PCC 6803)
- Phycobilisome 7.8 kda linker polypeptide, allophycocyanin-associated, core (7 kDa, Protein from Synechocystis sp. PCC 6803)
- Phycobiliprotein apce (100 kDa, Protein from Synechocystis sp. PCC 6803)
- Complex of phycobilisome from synechocystis pcc 6803 bound to ocp (Complex from Synechocystis sp. (strain PCC 6803 / Kazusa))
- Phycobilisome rod-core linker polypeptide cpcg (28 kDa, Protein from Synechocystis sp. PCC 6803)
- Phycocyanobilin (588 Da, Ligand)
- Beta,beta-carotene-4,4'-dione (564 Da, Ligand)
- Allophycocyanin subunit alpha-b (17 kDa, Protein from Synechocystis sp. PCC 6803)
- Allophycocyanin subunit beta-18 (18 kDa, Protein from Synechocystis sp. PCC 6803)
- Allophycocyanin alpha chain (17 kDa, Protein from Synechocystis sp. PCC 6803)
Top cylinder bound to OCP from high-resolution phycobilisome quenched by OCP (local refinement)
Resolution: 2.1 Å
EM Method: Single-particle
Fitted PDBs: 8tpj
Q-score: 0.675
Sauer PV, Cupellini L, Sutter M, Bondanza M, Dominguez Martin MA, Kirst H, Bina D, Koh AF, Kotecha A, Greber BJ, Nogales E, Polivka T, Mennucci B, Kerfeld CA
Sci Adv (2024) 10 pp. eadk7535-eadk7535 [ Pubmed: 38578996 DOI: doi:10.1126/sciadv.adk7535 ]
- Water (18 Da, Ligand)
- Orange carotenoid-binding protein (34 kDa, Protein from Synechocystis sp. PCC 6803)
- Phycobilisome 7.8 kda linker polypeptide, allophycocyanin-associated, core (7 kDa, Protein from Synechocystis sp. PCC 6803)
- Phycobiliprotein apce (100 kDa, Protein from Synechocystis sp. PCC 6803)
- Phycobilisome bound to ocp (Complex from Synechocystis sp. PCC 6803)
- Phycobilisome rod-core linker polypeptide cpcg (28 kDa, Protein from Synechocystis sp. PCC 6803)
- Beta,beta-carotene-4,4'-dione (564 Da, Ligand)
- Phycocyanobilin (588 Da, Ligand)
- Allophycocyanin alpha chain (17 kDa, Protein from Synechocystis sp. PCC 6803)
- Allophycocyanin beta chain (17 kDa, Protein from Synechocystis sp. PCC 6803)
Synechocystis PCC 6803 Phycobilisome core from up-down rod conformation
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7sc7
Q-score: 0.454
Dominguez-Martin MA, Sauer PV, Kirst H, Sutter M, Bina D, Greber BJ, Nogales E, Polivka T, Kerfeld CA
Nature (2022) 609 pp. 835-845 [ Pubmed: 36045294 DOI: doi:10.1038/s41586-022-05156-4 ]
- Allophycocyanin beta chain (17 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Allophycocyanin subunit alpha-b (17 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Allophycocyanin subunit beta-18 (18 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Allophycocyanin alpha chain (17 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycobilisome 7.8 kda linker polypeptide, allophycocyanin-associated, core (7 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycobiliprotein apce (100 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycobilisome rod-core linker polypeptide cpcg (28 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycocyanobilin (588 Da, Ligand)
- Sll1873 protein (12 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycobilisome from synechocystis pcc 6803 (Complex from Synechocystis sp. (strain PCC 6803 / Kazusa))
Synechocystis PCC 6803 Phycobilisome core, complex with OCP
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 7sc9
Q-score: 0.449
Dominguez-Martin MA, Sauer PV, Kirst H, Sutter M, Bina D, Greber BJ, Nogales E, Polivka T, Kerfeld CA
Nature (2022) 609 pp. 835-845 [ Pubmed: 36045294 DOI: doi:10.1038/s41586-022-05156-4 ]
- Allophycocyanin beta chain (17 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Allophycocyanin subunit alpha-b (17 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Allophycocyanin subunit beta-18 (18 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycobilisome 7.8 kda linker polypeptide, allophycocyanin-associated, core (7 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycobiliprotein apce (100 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycocyanobilin (588 Da, Ligand)
- Phycobilisome rod-core linker polypeptide cpcg (28 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Beta,beta-carotene-4,4'-dione (564 Da, Ligand)
- Sll1873 protein (12 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Complex of phycobilisome from synechocystis pcc 6803 with ocp (Complex from Synechocystis sp. (strain PCC 6803 / Kazusa))
- Allophycocyanin alpha chain (17 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Orange carotenoid-binding protein (34 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
B-cylinder of Synechocystis PCC 6803 Phycobilisome, complex with OCP - local refinement
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 7scb
Q-score: 0.497
Dominguez-Martin MA, Sauer PV, Kirst H, Sutter M, Bina D, Greber BJ, Nogales E, Polivka T, Kerfeld CA
Nature (2022) 609 pp. 835-845 [ Pubmed: 36045294 DOI: doi:10.1038/s41586-022-05156-4 ]
- Allophycocyanin beta chain (17 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Allophycocyanin subunit alpha-b (17 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Allophycocyanin subunit beta-18 (18 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycobilisome 7.8 kda linker polypeptide, allophycocyanin-associated, core (7 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycobiliprotein apce (100 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycocyanobilin (588 Da, Ligand)
- Phycobilisome rod-core linker polypeptide cpcg (28 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Beta,beta-carotene-4,4'-dione (564 Da, Ligand)
- Sll1873 protein (12 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Complex of phycobilisome from synechocystis pcc 6803 with ocp (Complex from Synechocystis sp. (strain PCC 6803 / Kazusa))
- Allophycocyanin alpha chain (17 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Orange carotenoid-binding protein (34 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
T-cylinder of Synechocystis PCC 6803 Phycobilisome, complex with OCP - local refinement
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 7scc
Q-score: 0.458
Dominguez-Martin MA, Sauer PV, Kirst H, Sutter M, Bina D, Greber BJ, Nogales E, Polivka T, Kerfeld CA
Nature (2022) 609 pp. 835-845 [ Pubmed: 36045294 DOI: doi:10.1038/s41586-022-05156-4 ]
- Allophycocyanin beta chain (17 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycobiliprotein apce (100 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycobilisome 7.8 kda linker polypeptide, allophycocyanin-associated, core (7 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycocyanobilin (588 Da, Ligand)
- Phycobilisome rod-core linker polypeptide cpcg (28 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Beta,beta-carotene-4,4'-dione (564 Da, Ligand)
- Complex of phycobilisome from synechocystis pcc 6803 with ocp (Complex from Synechocystis sp. (strain PCC 6803 / Kazusa))
- Allophycocyanin alpha chain (17 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Orange carotenoid-binding protein (34 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
Pentacylindrical allophycocyanin core from Thermosynechococcus vulcanus
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7vea
Q-score: 0.415
Kawakami K, Hamaguchi T, Hirose Y, Kosumi D, Miyata M, Kamiya N, Yonekura K
Nat Commun (2022) 13 pp. 3389-3389 [ Pubmed: 35715389 DOI: doi:10.1038/s41467-022-30962-9 ]
- Allophycocyanin alpha chain (17 kDa, Protein from Thermosynechococcus vestitus BP-1)
- Phycobiliprotein apce (127 kDa, Protein from Thermosynechococcus vestitus BP-1)
- Phycocyanobilin (588 Da, Ligand)
- Phycobilisome 7.8 kda linker polypeptide, allophycocyanin-associated, core (7 kDa, Protein from Thermosynechococcus vestitus BP-1)
- Phycobilisome core component (18 kDa, Protein from Thermosynechococcus vestitus BP-1)
- Allophycocyanin beta chain (17 kDa, Protein from Thermosynechococcus vestitus BP-1)
- Phycobilisome core complex from thermosynechococcus vulcanus (Complex from Thermosynechococcus vulcanus NIES-2134)