Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8bq6
Q-score: 0.628
Klusch N, Dreimann M, Senkler J, Rugen N, Kuhlbrandt W, Braun HP
Nat Plants (2023) 9 pp. 142-156 [ DOI: doi:10.1038/s41477-022-01308-6 Pubmed: 36585502 ]
- P1 (11 kDa, Protein from Arabidopsis thaliana)
- Fe (iii) ion (55 Da, Ligand)
- S-[2-({n-[(2r)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] dodecanethioate (540 Da, Ligand)
- Transmembrane protein (9 kDa, Protein from Arabidopsis thaliana)
- Cytochrome b-c1 complex subunit 9, mitochondrial (8 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-b (12 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 2 (45 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial (17 kDa, Protein from Arabidopsis thaliana)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- At2g46540/f11c10.23 (6 kDa, Protein from Arabidopsis thaliana)
- Zinc ion (65 Da, Ligand)
- Gamma carbonic anhydrase 2, mitochondrial (30 kDa, Protein from Arabidopsis thaliana)
- At3g07480.1 (17 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 (13 kDa, Protein from Arabidopsis thaliana)
- Ubiquinone-7 (658 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 3 (22 kDa, Protein from Arabidopsis thaliana)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 (7 kDa, Protein from Arabidopsis thaliana)
- Nadh-ubiquinone oxidoreductase chain 2 (55 kDa, Protein from Arabidopsis thaliana)
- Nadh-ubiquinone oxidoreductase chain 5 (74 kDa, Protein from Arabidopsis thaliana)
- Uncharacterized protein at1g67785 (7 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 (10 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-a (16 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 5-b (9 kDa, Protein from Arabidopsis thaliana)
- Crotonyl coenzyme a (835 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-a (8 kDa, Protein from Arabidopsis thaliana)
- Excitatory amino acid transporter (9 kDa, Protein from Arabidopsis thaliana)
- Uncharacterized protein at2g27730, mitochondrial (11 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial (43 kDa, Protein from Arabidopsis thaliana)
- Cytochrome b-c1 complex subunit rieske-1, mitochondrial (29 kDa, Protein from Arabidopsis thaliana)
- Probable mitochondrial-processing peptidase subunit beta, mitochondrial (59 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 (15 kDa, Protein from Arabidopsis thaliana)
- Acyl carrier protein 2, mitochondrial (14 kDa, Protein from Arabidopsis thaliana)
- B15 -- 1 beta subcomplex subunit 4 (8 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 (11 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial (81 kDa, Protein from Arabidopsis thaliana)
- Cytochrome b-c1 complex subunit 10, mitochondrial (5 kDa, Protein from Arabidopsis thaliana)
- 2,3-dimethoxy-5-methyl-6-(3,11,15,19-tetramethyl-eicosa-2,6,10,14,18-pentaenyl)-[1,4]benzoquinone (522 Da, Ligand)
- Ubiquinone-9 (795 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 (7 kDa, Protein from Arabidopsis thaliana)
- Mitochondrial arabidopsis thaliana i+iii2 supercomplex (complete conformation 2 composition) (Complex from Arabidopsis thaliana)
- Probable nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 (18 kDa, Protein from Arabidopsis thaliana)
- Flavin mononucleotide (456 Da, Ligand)
- Cytochrome c1 2, heme protein, mitochondrial (33 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-b (11 kDa, Protein from Arabidopsis thaliana)
- Nadh-ubiquinone oxidoreductase chain 3 (13 kDa, Protein from Arabidopsis thaliana)
- Nadh-ubiquinone oxidoreductase chain 6 (23 kDa, Protein from Arabidopsis thaliana)
- Probable nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial (19 kDa, Protein from Arabidopsis thaliana)
- Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate (745 Da, Ligand)
- Cytochrome b-c1 complex subunit 6-1, mitochondrial (7 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial (24 kDa, Protein from Arabidopsis thaliana)
- Nadh-ubiquinone oxidoreductase chain 4 (55 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial (13 kDa, Protein from Arabidopsis thaliana)
- Nadh-ubiquinone oxidoreductase chain 1 (36 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase subunit 4l (11 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial (12 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 8-a, mitochondrial (25 kDa, Protein from Arabidopsis thaliana)
- Cytochrome b-c1 complex subunit 7-2, mitochondrial (14 kDa, Protein from Arabidopsis thaliana)
- Probable mitochondrial-processing peptidase subunit alpha-1, mitochondrial (54 kDa, Protein from Arabidopsis thaliana)
- Cytochrome b (44 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial (28 kDa, Protein from Arabidopsis thaliana)
- Cytochrome b-c1 complex subunit 8-1, mitochondrial (8 kDa, Protein from Arabidopsis thaliana)
- Iron/sulfur cluster (351 Da, Ligand)
- Gamma carbonic anhydrase-like 2, mitochondrial (27 kDa, Protein from Arabidopsis thaliana)
- Esss subunit of nadh:ubiquinone oxidoreductase (complex i) protein (12 kDa, Protein from Arabidopsis thaliana)
- Gamma carbonic anhydrase 1, mitochondrial (30 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial (53 kDa, Protein from Arabidopsis thaliana)
- Outer envelope pore protein 16-3, chloroplastic/mitochondrial (17 kDa, Protein from Arabidopsis thaliana)
- At4g16450 (11 kDa, Protein from Arabidopsis thaliana)
- Acyl carrier protein 1, mitochondrial (13 kDa, Protein from Arabidopsis thaliana)
Resolution: 2.73 Å
EM Method: Single-particle
Fitted PDBs: 8bq5
Q-score: 0.642
Klusch N, Dreimann M, Senkler J, Rugen N, Kuhlbrandt W, Braun HP
Nat Plants (2023) 9 pp. 142-156 [ DOI: doi:10.1038/s41477-022-01308-6 Pubmed: 36585502 ]
- P1 (11 kDa, Protein from Arabidopsis thaliana)
- Fe (iii) ion (55 Da, Ligand)
- S-[2-({n-[(2r)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] dodecanethioate (540 Da, Ligand)
- Transmembrane protein (9 kDa, Protein from Arabidopsis thaliana)
- Cytochrome b-c1 complex subunit 9, mitochondrial (8 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-b (12 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 2 (45 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial (17 kDa, Protein from Arabidopsis thaliana)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- At2g46540/f11c10.23 (6 kDa, Protein from Arabidopsis thaliana)
- Zinc ion (65 Da, Ligand)
- Gamma carbonic anhydrase 2, mitochondrial (30 kDa, Protein from Arabidopsis thaliana)
- At3g07480.1 (17 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 (13 kDa, Protein from Arabidopsis thaliana)
- Ubiquinone-7 (658 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 3 (22 kDa, Protein from Arabidopsis thaliana)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 (7 kDa, Protein from Arabidopsis thaliana)
- Nadh-ubiquinone oxidoreductase chain 2 (55 kDa, Protein from Arabidopsis thaliana)
- Nadh-ubiquinone oxidoreductase chain 5 (74 kDa, Protein from Arabidopsis thaliana)
- Uncharacterized protein at1g67785 (7 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 (10 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-a (16 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 5-b (9 kDa, Protein from Arabidopsis thaliana)
- Crotonyl coenzyme a (835 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-a (8 kDa, Protein from Arabidopsis thaliana)
- Excitatory amino acid transporter (9 kDa, Protein from Arabidopsis thaliana)
- Uncharacterized protein at2g27730, mitochondrial (11 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial (43 kDa, Protein from Arabidopsis thaliana)
- Cytochrome b-c1 complex subunit rieske-1, mitochondrial (29 kDa, Protein from Arabidopsis thaliana)
- Probable mitochondrial-processing peptidase subunit beta, mitochondrial (59 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 (15 kDa, Protein from Arabidopsis thaliana)
- Acyl carrier protein 2, mitochondrial (14 kDa, Protein from Arabidopsis thaliana)
- B15 -- 1 beta subcomplex subunit 4 (8 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 (11 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial (81 kDa, Protein from Arabidopsis thaliana)
- Cytochrome b-c1 complex subunit 10, mitochondrial (5 kDa, Protein from Arabidopsis thaliana)
- 2,3-dimethoxy-5-methyl-6-(3,11,15,19-tetramethyl-eicosa-2,6,10,14,18-pentaenyl)-[1,4]benzoquinone (522 Da, Ligand)
- Ubiquinone-9 (795 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 (7 kDa, Protein from Arabidopsis thaliana)
- Probable nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 (18 kDa, Protein from Arabidopsis thaliana)
- Flavin mononucleotide (456 Da, Ligand)
- Cytochrome c1 2, heme protein, mitochondrial (33 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-b (11 kDa, Protein from Arabidopsis thaliana)
- Nadh-ubiquinone oxidoreductase chain 3 (13 kDa, Protein from Arabidopsis thaliana)
- Nadh-ubiquinone oxidoreductase chain 6 (23 kDa, Protein from Arabidopsis thaliana)
- Probable nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial (19 kDa, Protein from Arabidopsis thaliana)
- Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate (745 Da, Ligand)
- Cytochrome b-c1 complex subunit 6-1, mitochondrial (7 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial (24 kDa, Protein from Arabidopsis thaliana)
- Nadh-ubiquinone oxidoreductase chain 4 (55 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial (13 kDa, Protein from Arabidopsis thaliana)
- Nadh-ubiquinone oxidoreductase chain 1 (36 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase subunit 4l (11 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial (12 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 8-a, mitochondrial (25 kDa, Protein from Arabidopsis thaliana)
- Cytochrome b-c1 complex subunit 7-2, mitochondrial (14 kDa, Protein from Arabidopsis thaliana)
- Probable mitochondrial-processing peptidase subunit alpha-1, mitochondrial (54 kDa, Protein from Arabidopsis thaliana)
- Cytochrome b (44 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial (28 kDa, Protein from Arabidopsis thaliana)
- Cytochrome b-c1 complex subunit 8-1, mitochondrial (8 kDa, Protein from Arabidopsis thaliana)
- Iron/sulfur cluster (351 Da, Ligand)
- Mitochondrial arabidopsis thaliana i+iii2 supercomplex (complete conformation 1 composition) (Complex from Arabidopsis thaliana)
- Gamma carbonic anhydrase-like 2, mitochondrial (27 kDa, Protein from Arabidopsis thaliana)
- Esss subunit of nadh:ubiquinone oxidoreductase (complex i) protein (12 kDa, Protein from Arabidopsis thaliana)
- Gamma carbonic anhydrase 1, mitochondrial (30 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial (53 kDa, Protein from Arabidopsis thaliana)
- Outer envelope pore protein 16-3, chloroplastic/mitochondrial (17 kDa, Protein from Arabidopsis thaliana)
- At4g16450 (11 kDa, Protein from Arabidopsis thaliana)
- Acyl carrier protein 1, mitochondrial (13 kDa, Protein from Arabidopsis thaliana)
Membrane arm of deactive state CI from Q10 dataset
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7vy1
Q-score: 0.538
Gu J, Liu T, Guo R, Zhang L, Yang M
Nat Struct Mol Biol (2022) 29 pp. 172-182 [ DOI: doi:10.1038/s41594-022-00722-w Pubmed: 35145322 ]
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial (40 kDa, Protein from pig)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial (21 kDa, Protein from pig)
- Nadh-ubiquinone oxidoreductase chain 6 (19 kDa, Protein from pig)
- S-[2-({n-[(2r)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] dodecanethioate (540 Da, Ligand)
- Nadh-ubiquinone oxidoreductase chain 5 (68 kDa, Protein from pig)
- Nadh dehydrogenase [ubiquinone] 1 subunit c2 (14 kDa, Protein from pig)
- Nd3 (12 kDa, Protein from pig)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3 (9 kDa, Protein from pig)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11 (14 kDa, Protein from pig)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 (8 kDa, Protein from pig)
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (744 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial (21 kDa, Protein from pig)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10 (20 kDa, Protein from pig)
- Nadh dehydrogenase 1 beta subcomplex 6 (15 kDa, Protein from pig)
- Complex i-kfyi (8 kDa, Protein from pig)
- Respiratory complex i (Complex from Sus scrofa)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 (11 kDa, Protein from pig)
- Nadh-ubiquinone oxidoreductase chain 1 (35 kDa, Protein from pig)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 (21 kDa, Protein from pig)
- Complex i-b15 (15 kDa, Protein from pig)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 (16 kDa, Protein from pig)
- (9r,11s)-9-({[(1s)-1-hydroxyhexadecyl]oxy}methyl)-2,2-dimethyl-5,7,10-trioxa-2lambda~5~-aza-6lambda~5~-phosphaoctacosane-6,6,11-triol (767 Da, Ligand)
- Nadh-ubiquinone oxidoreductase chain 2 (39 kDa, Protein from pig)
- Complex i-esss (17 kDa, Protein from pig)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 (20 kDa, Protein from pig)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial (53 kDa, Protein from pig)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Coenzyme q10, (2z,6e,10z,14e,18e,22e,26z)-isomer (863 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1 (7 kDa, Protein from pig)
- Nadh-ubiquinone oxidoreductase chain 4 (51 kDa, Protein from pig)
- Cardiolipin (1 kDa, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 (16 kDa, Protein from pig)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 5 (12 kDa, Protein from pig)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial (11 kDa, Protein from pig)
- Acyl carrier protein (17 kDa, Protein from pig)
- Nadh-ubiquinone oxidoreductase chain 4l (10 kDa, Protein from pig)
Cryo-EM structure of Arabidopsis thaliana complex-I (closed conformation)
Resolution: 3.53 Å
EM Method: Single-particle
Fitted PDBs: 7ar8
Q-score: 0.464
Klusch N, Senkler J, Yildiz O, Kuehlbrandt W, Braun HP
Plant Cell (2021) 33 pp. 2072-2091 [ Pubmed: 33768254 DOI: doi:10.1093/plcell/koab092 ]
- Nadh-ubiquinone oxidoreductase chain 2 (55 kDa, Protein from Mouse-ear cress)
- Cryo-em structure of arabidopsis thaliana complex-i (closed conformation) (Complex from Arabidopsis thaliana)
- Nadh-ubiquinone oxidoreductase chain 5 (74 kDa, Protein from Mouse-ear cress)
- Furry (15 kDa, Protein from Mouse-ear cress)
- 1,2-dicaproyl-sn-phosphatidyl-l-serine (455 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial (81 kDa, Protein from Mouse-ear cress)
- Nadh dehydrogenase subunit 4l (11 kDa, Protein from Mouse-ear cress)
- Acyl carrier protein 1, mitochondrial (13 kDa, Protein from Mouse-ear cress)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 (13 kDa, Protein from Mouse-ear cress)
- S-[2-({n-[(2r)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] dodecanethioate (540 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 (11 kDa, Protein from Mouse-ear cress)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 5-b (9 kDa, Protein from Mouse-ear cress)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 (7 kDa, Protein from Mouse-ear cress)
- Esss subunit of nadh:ubiquinone oxidoreductase (complex i) protein (12 kDa, Protein from Mouse-ear cress)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Uncharacterized protein at2g27730, mitochondrial (11 kDa, Protein from Mouse-ear cress)
- Zinc ion (65 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 (10 kDa, Protein from Mouse-ear cress)
- Nadh dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial (28 kDa, Protein from Mouse-ear cress)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 8-a, mitochondrial (25 kDa, Protein from Mouse-ear cress)
- B15 -- 1 beta subcomplex subunit 4 (8 kDa, Protein from Mouse-ear cress)
- At3g07480.1 (17 kDa, Protein from Mouse-ear cress)
- Phosphatidylethanolamine (734 Da, Ligand)
- Acyl carrier protein 2, mitochondrial (14 kDa, Protein from Mouse-ear cress)
- P1 (11 kDa, Protein from Mouse-ear cress)
- Gamma carbonic anhydrase 1, mitochondrial (30 kDa, Protein from Mouse-ear cress)
- Nadh-ubiquinone oxidoreductase chain 4 (55 kDa, Protein from Mouse-ear cress)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-a (8 kDa, Protein from Mouse-ear cress)
- Transmembrane protein (9 kDa, Protein from Mouse-ear cress)
- Excitatory amino acid transporter (9 kDa, Protein from Mouse-ear cress)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-b (11 kDa, Protein from Mouse-ear cress)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-a (16 kDa, Protein from Mouse-ear cress)
- At2g46540/f11c10.23 (6 kDa, Protein from Mouse-ear cress)
- Ubiquinone-9 (795 Da, Ligand)
- Flavin mononucleotide (456 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial (53 kDa, Protein from Mouse-ear cress)
- Lauryl maltose neopentyl glycol (1 kDa, Ligand)
- Phosphatidylinositol (887 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial (13 kDa, Protein from Mouse-ear cress)
- Unknown (2 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial (24 kDa, Protein from Mouse-ear cress)
- Probable nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial (19 kDa, Protein from Mouse-ear cress)
- Gamma carbonic anhydrase-like 2, mitochondrial (27 kDa, Protein from Mouse-ear cress)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial (12 kDa, Protein from Mouse-ear cress)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-b (12 kDa, Protein from Mouse-ear cress)
- Nadh-ubiquinone oxidoreductase chain 3 (13 kDa, Protein from Mouse-ear cress)
- Gamma carbonic anhydrase 2, mitochondrial (30 kDa, Protein from Mouse-ear cress)
- Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate (745 Da, Ligand)
- Fe (iii) ion (55 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial (17 kDa, Protein from Mouse-ear cress)
- Nadh dehydrogenase subunit 7 (45 kDa, Protein from Mouse-ear cress)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 (15 kDa, Protein from Mouse-ear cress)
- Iron/sulfur cluster (351 Da, Ligand)
- (7s)-4-hydroxy-n,n,n-trimethyl-9-oxo-7-[(palmitoyloxy)methyl]-3,5,8-trioxa-4-phosphahexacosan-1-aminium 4-oxide (763 Da, Ligand)
- Probable nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 (18 kDa, Protein from Mouse-ear cress)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 3 (22 kDa, Protein from Mouse-ear cress)
- Nadh-ubiquinone oxidoreductase chain 1 (36 kDa, Protein from Mouse-ear cress)
- (1s)-2-{[{[(2r)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl stearate (751 Da, Ligand)
- At4g16450 (11 kDa, Protein from Mouse-ear cress)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 (7 kDa, Protein from Mouse-ear cress)
- Nadh-ubiquinone oxidoreductase chain 6 (23 kDa, Protein from Mouse-ear cress)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial (43 kDa, Protein from Mouse-ear cress)
Cryo-EM structure of Arabidopsis thaliana Complex-I (complete composition)
Resolution: 3.41 Å
EM Method: Single-particle
Fitted PDBs: 7arb
Q-score: 0.544
Klusch N, Senkler J, Yildiz O, Kuehlbrandt W, Braun HP
Plant Cell (2021) 33 pp. 2072-2091 [ Pubmed: 33768254 DOI: doi:10.1093/plcell/koab092 ]
- P1 (11 kDa, Protein from Arabidopsis thaliana)
- Furry (15 kDa, Protein from Arabidopsis thaliana)
- 1,2-dicaproyl-sn-phosphatidyl-l-serine (455 Da, Ligand)
- S-[2-({n-[(2r)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] dodecanethioate (540 Da, Ligand)
- Nadh dehydrogenase subunit 4l (11 kDa, Protein from Arabidopsis thaliana)
- Transmembrane protein (9 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-b (12 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial (17 kDa, Protein from Arabidopsis thaliana)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- At2g46540/f11c10.23 (6 kDa, Protein from Arabidopsis thaliana)
- Zinc ion (65 Da, Ligand)
- Gamma carbonic anhydrase 2, mitochondrial (30 kDa, Protein from Arabidopsis thaliana)
- At3g07480.1 (17 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 (13 kDa, Protein from Arabidopsis thaliana)
- Phosphatidylethanolamine (734 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 3 (22 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 (7 kDa, Protein from Arabidopsis thaliana)
- Nadh-ubiquinone oxidoreductase chain 2 (55 kDa, Protein from Arabidopsis thaliana)
- Cryo-em structure of arabidopsis thaliana complex-i (complete composition) (Complex from Arabidopsis thaliana)
- Nadh-ubiquinone oxidoreductase chain 5 (74 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 (10 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-a (16 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 5-b (9 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-a (8 kDa, Protein from Arabidopsis thaliana)
- Excitatory amino acid transporter (9 kDa, Protein from Arabidopsis thaliana)
- Uncharacterized protein at2g27730, mitochondrial (11 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial (43 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 (15 kDa, Protein from Arabidopsis thaliana)
- Acyl carrier protein 2, mitochondrial (14 kDa, Protein from Arabidopsis thaliana)
- B15 -- 1 beta subcomplex subunit 4 (8 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 (11 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial (81 kDa, Protein from Arabidopsis thaliana)
- Ubiquinone-9 (795 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 (7 kDa, Protein from Arabidopsis thaliana)
- Probable nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 (18 kDa, Protein from Arabidopsis thaliana)
- Flavin mononucleotide (456 Da, Ligand)
- Nadh-ubiquinone oxidoreductase chain 3 (13 kDa, Protein from Arabidopsis thaliana)
- Lauryl maltose neopentyl glycol (1 kDa, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-b (11 kDa, Protein from Arabidopsis thaliana)
- Phosphatidylinositol (887 Da, Ligand)
- Nadh-ubiquinone oxidoreductase chain 6 (23 kDa, Protein from Arabidopsis thaliana)
- Probable nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial (19 kDa, Protein from Arabidopsis thaliana)
- Unknown (2 kDa, Protein from Arabidopsis thaliana)
- Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate (745 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial (24 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase subunit 7 (45 kDa, Protein from Arabidopsis thaliana)
- At4g16450 (11 kDa, Protein from Arabidopsis thaliana)
- Nadh-ubiquinone oxidoreductase chain 4 (55 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial (13 kDa, Protein from Arabidopsis thaliana)
- Nadh-ubiquinone oxidoreductase chain 1 (36 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 8-a, mitochondrial (25 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial (12 kDa, Protein from Arabidopsis thaliana)
- Fe (iii) ion (55 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial (28 kDa, Protein from Arabidopsis thaliana)
- Iron/sulfur cluster (351 Da, Ligand)
- (7s)-4-hydroxy-n,n,n-trimethyl-9-oxo-7-[(palmitoyloxy)methyl]-3,5,8-trioxa-4-phosphahexacosan-1-aminium 4-oxide (763 Da, Ligand)
- Gamma carbonic anhydrase-like 2, mitochondrial (27 kDa, Protein from Arabidopsis thaliana)
- Esss subunit of nadh:ubiquinone oxidoreductase (complex i) protein (12 kDa, Protein from Arabidopsis thaliana)
- Gamma carbonic anhydrase 1, mitochondrial (30 kDa, Protein from Arabidopsis thaliana)
- (1s)-2-{[{[(2r)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl stearate (751 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial (53 kDa, Protein from Arabidopsis thaliana)
- Acyl carrier protein 1, mitochondrial (13 kDa, Protein from Arabidopsis thaliana)
Cryo-EM structure of Arabidopsis thaliana Complex-I (membrane tip)
Resolution: 3.17 Å
EM Method: Single-particle
Fitted PDBs: 7aqw
Q-score: 0.53
Klusch N, Senkler J, Yildiz O, Kuhlbrandt W, Braun HP
Plant Cell (2021) 33 pp. 2072-2091 [ DOI: doi:10.1093/plcell/koab092 Pubmed: 33768254 ]
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 (11 kDa, Protein from Arabidopsis thaliana)
- (7s)-4-hydroxy-n,n,n-trimethyl-9-oxo-7-[(palmitoyloxy)methyl]-3,5,8-trioxa-4-phosphahexacosan-1-aminium 4-oxide (763 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-a (8 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-b (12 kDa, Protein from Arabidopsis thaliana)
- S-[2-({n-[(2r)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] dodecanethioate (540 Da, Ligand)
- Nadh-ubiquinone oxidoreductase chain 5 (74 kDa, Protein from Arabidopsis thaliana)
- B15 -- 1 beta subcomplex subunit 4 (8 kDa, Protein from Arabidopsis thaliana)
- Arabidopsis complex i - membrane tip (Complex from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 (13 kDa, Protein from Arabidopsis thaliana)
- Phosphatidylethanolamine (734 Da, Ligand)
- Transmembrane protein (9 kDa, Protein from Arabidopsis thaliana)
- Esss subunit of nadh:ubiquinone oxidoreductase (complex i) protein (12 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial (13 kDa, Protein from Arabidopsis thaliana)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 (7 kDa, Protein from Arabidopsis thaliana)
- P1 (11 kDa, Protein from Arabidopsis thaliana)
- Acyl carrier protein 1, mitochondrial (13 kDa, Protein from Arabidopsis thaliana)
- Nadh-ubiquinone oxidoreductase chain 4 (55 kDa, Protein from Arabidopsis thaliana)
Cryo-EM structure of Polytomella Complex-I (membrane arm)
Resolution: 2.97 Å
EM Method: Single-particle
Fitted PDBs: 7ar9
Q-score: 0.565
Klusch N, Senkler J, Yildiz O, Kuhlbrandt W, Braun HP
Plant Cell (2021) 33 pp. 2072-2091 [ DOI: doi:10.1093/plcell/koab092 Pubmed: 33768254 ]
- B12 (6 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Ashi (16 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Cal (31 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- B9 (4 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Nd4l (13 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Mnll (13 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Pdsw (18 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Nd1 (31 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Cardiolipin (1 kDa, Ligand)
- B14.5b (9 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Nd5 (58 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- B14.7 (22 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Pgiv (11 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Mwfe (8 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Kfyi (12 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- 15 kda (8 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Nuop8 (15 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Ca2 (33 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Nd6 (15 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- B22 (14 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Phosphatidylethanolamine (734 Da, Ligand)
- Ca3 (24 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Aggg (7 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Water (18 Da, Ligand)
- B15 (16 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- B18 (10 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Nd4 (48 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Nuop5 (15 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Esss (19 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- B16.6 (16 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Sdap1 (13 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Nuop4 (9 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Nuop7 (13 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Nd2 (41 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- (7s)-4-hydroxy-n,n,n-trimethyl-9-oxo-7-[(palmitoyloxy)methyl]-3,5,8-trioxa-4-phosphahexacosan-1-aminium 4-oxide (763 Da, Ligand)
- Polytomella complex i - membrane arm (Complex from Polytomella sp. Pringsheim 198.80)
- C1-fdx (23 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Unknown (4 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Unknown (3 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Nd3 (17 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- S-[2-({n-[(2r)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] dodecanethioate (540 Da, Ligand)
Cryo-EM structure of Polytomella Complex-I (complete composition)
Resolution: 3.11 Å
EM Method: Single-particle
Fitted PDBs: 7ard
Q-score: 0.557
Klusch N, Senkler J, Yildiz O, Kuhlbrandt W, Braun HP
Plant Cell (2021) 33 pp. 2072-2091 [ Pubmed: 33768254 DOI: doi:10.1093/plcell/koab092 ]
- Nd3 (17 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Sdap2 (13 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Cryo-em structure of polytomella complex-i (complete composition) (Complex from Polytomella sp. Pringsheim 198.80)
- Nd4l (13 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Nuop5 (15 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Nd6 (15 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- 24 kda (30 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Ca2 (33 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- S-[2-({n-[(2r)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] dodecanethioate (540 Da, Ligand)
- Complex i-b22 (14 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Nuop8 (15 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Nd5 (58 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Esss (19 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- 75 kda (77 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Zinc ion (65 Da, Ligand)
- B14 (16 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Unknown (3 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Phosphatidylethanolamine (734 Da, Ligand)
- Nd4 (48 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Nd7 (45 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- B18 (10 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Tyky (26 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- B13 (17 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- 13 kda (14 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Aggg (7 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- B12 (6 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Cal (31 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Mnll (13 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Pdsw (18 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Water (18 Da, Ligand)
- 15 kda (8 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- B14.5b (9 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Flavin mononucleotide (456 Da, Ligand)
- Sdap1 (13 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Unknown (4 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- B8 (10 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate (745 Da, Ligand)
- 51 kda (51 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- B15 (16 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Nd9 (25 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Kfyi (12 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- B9 (4 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- B14.5a (13 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Nuop7 (13 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- (7s)-4-hydroxy-n,n,n-trimethyl-9-oxo-7-[(palmitoyloxy)methyl]-3,5,8-trioxa-4-phosphahexacosan-1-aminium 4-oxide (763 Da, Ligand)
- Pgiv (11 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Iron/sulfur cluster (351 Da, Ligand)
- Ca3 (24 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- C1-fdx (23 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Ashi (16 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Nd1 (31 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- 39 kda (41 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Mwfe (8 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Cardiolipin (1 kDa, Ligand)
- B17.2 (18 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Nd2 (41 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- B14.7 (22 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- 18 kda (20 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- B16.6 (16 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Nuop4 (9 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Psst (18 kDa, Protein from Polytomella sp. Pringsheim 198.80)
Plant mitochondrial respiratory complex I
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7a23
Q-score: 0.338
Soufari H, Parrot C, Kuhn L, Waltz F, Hashem Y
Nat Commun (2020) 11 pp. 5195-5195 [ DOI: doi:10.1038/s41467-020-18814-w Pubmed: 33060577 ]
- Pdsw (12 kDa, Protein from Brassica oleracea)
- B8 (10 kDa, Protein from Brassica oleracea)
- B17.2 (18 kDa, Protein from Brassica oleracea)
- Aggg (7 kDa, Protein from Brassica oleracea)
- Bicarbonate ion (61 Da, Ligand)
- B18 (11 kDa, Protein from Brassica oleracea)
- Flavin mononucleotide (456 Da, Ligand)
- Acpm2 (14 kDa, Protein from Brassica oleracea)
- Ubiquinone-10 (863 Da, Ligand)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Cardiolipin (1 kDa, Ligand)
- B12-1 (8 kDa, Protein from Brassica oleracea)
- Mwfe (7 kDa, Protein from Brassica oleracea)
- B14.5a (15 kDa, Protein from Brassica oleracea)
- Iron/sulfur cluster (351 Da, Ligand)
- Nad4lm (11 kDa, Protein from Brassica oleracea)
- Nad7m (45 kDa, Protein from Brassica oleracea)
- Psst (24 kDa, Protein from Brassica oleracea)
- 39kda (43 kDa, Protein from Brassica oleracea)
- 51kda (53 kDa, Protein from Brassica oleracea)
- B9 (6 kDa, Protein from Brassica oleracea)
- B13 (19 kDa, Protein from Brassica oleracea)
- Nad6m (23 kDa, Protein from Brassica oleracea)
- Nad4m (55 kDa, Protein from Brassica oleracea)
- B16.6 (16 kDa, Protein from Brassica oleracea)
- B14.5b (9 kDa, Protein from Brassica oleracea)
- 24kda (28 kDa, Protein from Brassica oleracea)
- Mitochondrial respiratory complex i (Complex from Brassica oleracea)
- B15 (8 kDa, Protein from Brassica oleracea)
- Nad5m (74 kDa, Protein from Brassica oleracea)
- Phosphatidylinositol (887 Da, Ligand)
- P2 (11 kDa, Protein from Brassica oleracea)
- B22 (13 kDa, Protein from Brassica oleracea)
- P1 (11 kDa, Protein from Brassica oleracea)
- Unk1 (1 kDa, Protein from Brassica oleracea)
- Nad2m (55 kDa, Protein from Brassica oleracea)
- 15kda (9 kDa, Protein from Brassica oleracea)
- Tyky (25 kDa, Protein from Brassica oleracea)
- Acpm1 (13 kDa, Protein from Brassica oleracea)
- Cal1 (27 kDa, Protein from Brassica oleracea)
- Ca1 (30 kDa, Protein from Brassica oleracea)
- Unk2 (1 kDa, Protein from Brassica oleracea)
- Pgiv (11 kDa, Protein from Brassica oleracea)
- B14 (15 kDa, Protein from Brassica oleracea)
- Nad9m (22 kDa, Protein from Brassica oleracea)
- Nad3m (13 kDa, Protein from Brassica oleracea)
- 13kda (12 kDa, Protein from Brassica oleracea)
- Nad1m (36 kDa, Protein from Brassica oleracea)
- Zinc ion (65 Da, Ligand)
- 75kda (81 kDa, Protein from Brassica oleracea)
- 20.9kda (11 kDa, Protein from Brassica oleracea)
- Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate (745 Da, Ligand)
- Esss (12 kDa, Protein from Brassica oleracea)
- 18kda (17 kDa, Protein from Brassica oleracea)
- (1s)-2-{[(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl stearate (720 Da, Ligand)
Entire ovine respiratory complex I, Combined Map
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 5lnk
Q-score: 0.408
Fiedorczuk K, Letts JA, Degliesposti G, Kaszuba K, Skehel M, Sazanov LA
Nature (2016) 538 pp. 406-410 [ Pubmed: 27595392 DOI: doi:10.1038/nature19794 ]
- Mitochondrial complex i, b22 subunit (21 kDa, Protein from Sheep)
- Mitochondrial complex i, b14 subunit (14 kDa, Protein from Sheep)
- Mitochondrial complex i, nd3 subunit (13 kDa, Protein from Sheep)
- Mitochondrial complex i, b17 subunit (15 kDa, Protein from Sheep)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Flavin mononucleotide (456 Da, Ligand)
- Mitochondrial complex i, b16.6 subunit (16 kDa, Protein from Sheep)
- Mitochondrial complex i, tyky subunit (20 kDa, Protein from Sheep)
- Cardiolipin (1 kDa, Ligand)
- Mitochondrial complex i, kfyi subunit (5 kDa, Protein from Sheep)
- Mitochondrial complex i, 30 kda subunit (26 kDa, Protein from Sheep)
- Mitochondrial complex i, nd1 subunit (35 kDa, Protein from Sheep)
- Mitochondrial complex i, nd4 subunit (52 kDa, Protein from Sheep)
- Mitochondrial complex i, 75 kda subunit (77 kDa, Protein from Sheep)
- Mitochondrial complex i, b14.5a subunit (12 kDa, Protein from Sheep)
- Iron/sulfur cluster (351 Da, Ligand)
- Mitochondrial complex i, mnll subunit (6 kDa, Protein from Sheep)
- Acyl carrier protein (10 kDa, Protein from Sheep)
- Mitochondrial complex i, pgiv subunit (20 kDa, Protein from Sheep)
- Mitochondrial complex i, 39 kda subunit (38 kDa, Protein from Sheep)
- Mitochondrial complex i, pdsw subunit (20 kDa, Protein from Sheep)
- Mitochondrial complex i, 18 kda subunit (15 kDa, Protein from Sheep)
- Mitochondrial complex i, 15 kda subunit (12 kDa, Protein from Sheep)
- Mitochondrial complex i, 10 kda subunit (8 kDa, Protein from Sheep)
- Mitochondrial complex i, b12 subunit (11 kDa, Protein from Sheep)
- Mitochondrial complex i, 13 kda subunit (10 kDa, Protein from Sheep)
- Mitochondrial complex i, nd5 subunit (67 kDa, Protein from Sheep)
- 4'-phosphopantetheine (358 Da, Ligand)
- Mitochondrial complex i, nd6 subunit (19 kDa, Protein from Sheep)
- Mitochondrial complex i, aggg subunit (8 kDa, Protein from Sheep)
- Mitochondrial complex i, 42 kda subunit (36 kDa, Protein from Sheep)
- Mitochondrial complex i, b14.5b subunit (14 kDa, Protein from Sheep)
- Mitochondrial complex i, sgdh subunit (16 kDa, Protein from Sheep)
- Mitochondrial complex i, 24 kda subunit (23 kDa, Protein from Sheep)
- Mitochondrial complex i (970 kDa, Complex from Ovis aries)
- Mitochondrial complex i, 49 kda subunit (47 kDa, Protein from Sheep)
- Mitochondrial complex i, nd2 subunit (39 kDa, Protein from Sheep)
- Mitochondrial complex i, b8 subunit (10 kDa, Protein from Sheep)
- Mitochondrial complex i, b17.2 subunit (17 kDa, Protein from Sheep)
- Mitochondrial complex i, b15 subunit (14 kDa, Protein from Sheep)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Mitochondrial complex i, b9 subunit (9 kDa, Protein from Sheep)
- Mitochondrial complex i, esss subunit (14 kDa, Protein from Sheep)
- Mitochondrial complex i, b18 subunit (16 kDa, Protein from Sheep)
- Mitochondrial complex i, b13 subunit (13 kDa, Protein from Sheep)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial (18 kDa, Protein from Sheep)
- Mitochondrial complex i, 51 kda subunit (48 kDa, Protein from Sheep)
- 1,2-diacyl-sn-glycero-3-phosphoethanolamine (748 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Mitochondrial complex i, psst subunit (20 kDa, Protein from Sheep)
- Mitochondrial complex i, b14.7 subunit (10 kDa, Protein from Sheep)
- Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate (745 Da, Ligand)
- Mitochondrial complex i, mwfe subunit (8 kDa, Protein from Sheep)
- S-[2-({n-[(2s)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] tetradecanethioate (568 Da, Ligand)
- Mitochondrial complex i, nd4l subunit (10 kDa, Protein from Sheep)