Photosynthetic LH1-RC-HiPIP complex from the purple bacterium Halorhodospira halophila
Tani K, Kanno R, Nagashima KVP, Kawakami M, Hiwatashi N, Nakata K, Nagashima S, Inoue K, Takaichi S, Purba ER, Hall M, Yu LJ, Madigan MT, Mizoguchi A, Humbel BM, Kimura Y, Wang-Otomo ZY
Commun Biol (2025) 8 pp. 42-42 [ Pubmed: 39799244 DOI: doi:10.1038/s42003-024-07421-w ]
- Lh1-rc-hipip complex of halorhodospira halophila (Complex from Halorhodospira halophila)
- (1r)-2-{[{[(2s)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11e)-octadec-11-enoate (749 Da, Ligand)
- Heme c (618 Da, Ligand)
- Bacteriochlorophyll a (911 Da, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Antenna complex, alpha/beta subunit (7 kDa, Protein from Halorhodospira halophila)
- (2s)-3-hydroxypropane-1,2-diyl dihexadecanoate (568 Da, Ligand)
- Ubiquinone-8 (727 Da, Ligand)
- Photosynthetic reaction center cytochrome c subunit (40 kDa, Protein from Halorhodospira halophila)
- Menaquinone 8 (717 Da, Ligand)
- Water (18 Da, Ligand)
- Photosynthetic lh1-rc-hipip triple complex from the purple phototrophic bacterium halorhodospira halophila (Complex from Halorhodospira halophila)
- Reaction center protein l chain (30 kDa, Protein from Halorhodospira halophila)
- Reaction center protein m chain (35 kDa, Protein from Halorhodospira halophila)
- Antenna complex, alpha/beta subunit (8 kDa, Protein from Halorhodospira halophila)
- Antenna complex, alpha/beta subunit (7 kDa, Protein from Halorhodospira halophila)
- Palmitic acid (256 Da, Ligand)
- Bacteriopheophytin a (889 Da, Ligand)
- Fe (iii) ion (55 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- High-potential iron-sulfur protein (15 kDa, Protein from Halorhodospira halophila)
- Cardiolipin (1 kDa, Ligand)
- Magnesium ion (24 Da, Ligand)
- Antenna complex, alpha/beta subunit (7 kDa, Protein from Halorhodospira halophila)
- Photosynthetic reaction centre, h-chain (30 kDa, Protein from Halorhodospira halophila)
- Spirilloxanthin (596 Da, Ligand)
Photosynthetic LH1-RC complex from the purple bacterium Halorhodospira halophila
Tani K, Kanno R, Nagashima KVP, Kawakami M, Hiwatashi N, Nakata K, Nagashima S, Inoue K, Takaichi S, Purba ER, Hall M, Yu LJ, Madigan MT, Mizoguchi A, Humbel BM, Kimura Y, Wang-Otomo ZY
Commun Biol (2025) 8 pp. 42-42 [ Pubmed: 39799244 DOI: doi:10.1038/s42003-024-07421-w ]
- (1r)-2-{[{[(2s)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11e)-octadec-11-enoate (749 Da, Ligand)
- Heme c (618 Da, Ligand)
- Bacteriochlorophyll a (911 Da, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Photosynthetic reaction center h subunit (30 kDa, Protein from Halorhodospira halophila)
- Antenna complex, alpha/beta subunit (7 kDa, Protein from Halorhodospira halophila)
- (2s)-3-hydroxypropane-1,2-diyl dihexadecanoate (568 Da, Ligand)
- Ubiquinone-8 (727 Da, Ligand)
- Photosynthetic reaction center cytochrome c subunit (40 kDa, Protein from Halorhodospira halophila)
- Menaquinone 8 (717 Da, Ligand)
- Water (18 Da, Ligand)
- Photosynthetic lh1-rc complex from the purple phototrophic bacterium halorhodospira halophila (Complex from Halorhodospira halophila)
- Reaction center protein l chain (30 kDa, Protein from Halorhodospira halophila)
- Lh1-rc complex of halorhodospira halophila (Complex from Halorhodospira halophila)
- Reaction center protein m chain (35 kDa, Protein from Halorhodospira halophila)
- Antenna complex, alpha/beta subunit (8 kDa, Protein from Halorhodospira halophila)
- Antenna complex, alpha/beta subunit (7 kDa, Protein from Halorhodospira halophila)
- Palmitic acid (256 Da, Ligand)
- Bacteriopheophytin a (889 Da, Ligand)
- Fe (iii) ion (55 Da, Ligand)
- Cardiolipin (1 kDa, Ligand)
- Magnesium ion (24 Da, Ligand)
- Antenna complex, alpha/beta subunit (7 kDa, Protein from Halorhodospira halophila)
- Spirilloxanthin (596 Da, Ligand)
Cryo-EM structure of photosynthetic LH1' complex of Roseospirillum parvum
Resolution: 2.35 Å
EM Method: Single-particle
Fitted PDBs: 8zjw
Q-score: 0.699
Wang XP, Wang GL, Fu Y, Minamino A, Zou MJ, Ma F, Xu B, Wang-Otomo ZY, Kimura Y, Madigan MT, Overmann J, Yu LJ
Commun Biol (2024) 7 pp. 1658-1658 [ Pubmed: 39702771 DOI: doi:10.1038/s42003-024-07354-4 ]
- Lh1 prime complex (Complex from Roseospirillum parvum)
- Bacteriochlorophyll a (911 Da, Ligand)
- Beta subunit of light-harvesting 1 complex (7 kDa, Protein from Roseospirillum parvum)
- Alpha subunit of light-harvesting 1 complex (7 kDa, Protein from Roseospirillum parvum)
- Spirilloxanthin (596 Da, Ligand)
Cryo-EM structure of photosynthetic LH1-RC core complex of Roseospirillum parvum
Resolution: 2.65 Å
EM Method: Single-particle
Fitted PDBs: 8zk2
Q-score: 0.637
Wang XP, Wang GL, Fu Y, Minamino A, Zou MJ, Ma F, Xu B, Wang-Otomo ZY, Kimura Y, Madigan MT, Overmann J, Yu LJ
Commun Biol (2024) 7 pp. 1658-1658 [ Pubmed: 39702771 DOI: doi:10.1038/s42003-024-07354-4 ]
- Fe (iii) ion (55 Da, Ligand)
- (1r)-2-{[{[(2s)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11e)-octadec-11-enoate (749 Da, Ligand)
- Heme c (618 Da, Ligand)
- Photosynthetic reaction center cytochrome c subunit (39 kDa, Protein from Roseospirillum parvum)
- Bacteriochlorophyll a (911 Da, Ligand)
- Beta subunit of light-harvesting 1 complex (7 kDa, Protein from Roseospirillum parvum)
- Magnesium ion (24 Da, Ligand)
- Menaquinone 8 (717 Da, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Photosynthetic reaction center h subunit (27 kDa, Protein from Roseospirillum parvum)
- Alpha subunit of light-harvesting 1 complex (7 kDa, Protein from Roseospirillum parvum)
- Bacteriopheophytin a (889 Da, Ligand)
- Octadecane (254 Da, Ligand)
- Spirilloxanthin (596 Da, Ligand)
- Lh1-rc core complex (Complex from Roseospirillum parvum)
- Reaction center protein l chain (30 kDa, Protein from Roseospirillum parvum)
- Reaction center protein m chain (35 kDa, Protein from Roseospirillum parvum)
LH2 complex from Ectothiorhodospira haloalkaliphila at near-atomic resolution
Resolution: 1.7 Å
EM Method: Single-particle
Fitted PDBs: 8z4v
Q-score: 0.823
Burtseva AD, Baymukhametov TN, Bolshakov MA, Makhneva ZK, Mardanov AV, Tsedilin AM, Zhang H, Popov VO, Ashikhmin AA, Boyko KM
Structure (2024) [ Pubmed: 39694041 DOI: doi:10.1016/j.str.2024.11.015 ]
- Light-harvesting protein b-800/850 alpha chain (7 kDa, Protein from Ectothiorhodospira haloalkaliphila ATCC 51935)
- Water (18 Da, Ligand)
- Light-harvesting protein b:800-850 subunit beta (5 kDa, Protein from Ectothiorhodospira haloalkaliphila ATCC 51935)
- Anhydrorhodovibrin (566 Da, Ligand)
- Lh2 complex from ectothiorhodospira haloalkaliphila (Complex from Ectothiorhodospira haloalkaliphila)
- Bacteriochlorophyll a (911 Da, Ligand)
Cryo-EM structure of the Rhodospirillum rubrum RC-LH1 complex
Resolution: 3.02 Å
EM Method: Single-particle
Fitted PDBs: 9k3q
Q-score: 0.534
To Be Published
- Reaction center_light harvesting complex 1 from rhodospirillum rubrum (Complex from Rhodospirillum rubrum)
- Reaction center protein m chain (29 kDa, Protein from Rhodospirillum rubrum)
- Light-harvesting protein b-870 beta chain (5 kDa, Protein from Rhodospirillum rubrum)
- Reaction center protein l chain (30 kDa, Protein from Rhodospirillum rubrum)
- Ubiquinone-10 (863 Da, Ligand)
- Trans-geranyl bacteriochlorophyll a (901 Da, Ligand)
- Photoreaction center protein h (27 kDa, Protein from Rhodospirillum rubrum)
- Bacteriopheophytin a (889 Da, Ligand)
- Spirilloxanthin (596 Da, Ligand)
- Light-harvesting protein b-870 alpha chain (5 kDa, Protein from Rhodospirillum rubrum)
- Fe (iii) ion (55 Da, Ligand)
Cryo-EM structure of the LH1 complex from thermochromatium tepidum
Resolution: 3.11 Å
EM Method: Single-particle
Fitted PDBs: 8jc8
Q-score: 0.575
Yan YH, Wang GL, Yue XY, Ma F, Madigan MT, Wang-Otomo ZY, Zou MJ, Yu LJ
Biochim Biophys Acta Bioenerg (2024) 1865 pp. 149050-149050 [ DOI: doi:10.1016/j.bbabio.2024.149050 Pubmed: 38806091 ]
- Lh1 beta polypeptide (5 kDa, Protein from Thermochromatium tepidum)
- Lh1 alpha polypeptide (6 kDa, Protein from Thermochromatium tepidum)
- Calcium ion (40 Da, Ligand)
- Bacteriochlorophyll a (911 Da, Ligand)
- Octadecane (254 Da, Ligand)
- Spirilloxanthin (596 Da, Ligand)
- Lh1 complex (Complex from Thermochromatium tepidum)
Cryo-EM structure of the LH1 complex from thermochromatium tepidum
Resolution: 3.32 Å
EM Method: Single-particle
Fitted PDBs: 8jc9
Q-score: 0.549
Yan YH, Wang GL, Yue XY, Ma F, Madigan MT, Wang-Otomo ZY, Zou MJ, Yu LJ
Biochim Biophys Acta Bioenerg (2024) 1865 pp. 149050-149050 [ DOI: doi:10.1016/j.bbabio.2024.149050 Pubmed: 38806091 ]
- Dodecane (170 Da, Ligand)
- Lh1 beta polypeptide (5 kDa, Protein from Thermochromatium tepidum)
- Calcium ion (40 Da, Ligand)
- Bacteriochlorophyll a (911 Da, Ligand)
- Lh1 alpha polypeptide (7 kDa, Protein from Thermochromatium tepidum)
- Spirilloxanthin (596 Da, Ligand)
- Lh1 complex (Complex from Thermochromatium tepidum)
Resolution: 2.24 Å
EM Method: Single-particle
Fitted PDBs: 8wdu
Q-score: 0.676
Tani K, Kanno R, Harada A, Kobayashi Y, Minamino A, Takenaka S, Nakamura N, Ji XC, Purba ER, Hall M, Yu LJ, Madigan MT, Mizoguchi A, Iwasaki K, Humbel BM, Kimura Y, Wang-Otomo ZY
Commun Biol (2024) 7 pp. 176-176 [ Pubmed: 38347078 DOI: doi:10.1038/s42003-024-05863-w ]
- Antenna complex alpha/beta subunit (7 kDa, Protein from Allochromatium vinosum DSM 180)
- Antenna complex alpha/beta subunit (5 kDa, Protein from Allochromatium vinosum DSM 180)
- (1r)-2-{[{[(2s)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11e)-octadec-11-enoate (749 Da, Ligand)
- Antenna complex alpha/beta subunit (7 kDa, Protein from Allochromatium vinosum DSM 180)
- Bacteriochlorophyll a (911 Da, Ligand)
- Reaction center protein l chain (31 kDa, Protein from Allochromatium vinosum DSM 180)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- (2s)-3-hydroxypropane-1,2-diyl dihexadecanoate (568 Da, Ligand)
- Reaction center protein m chain (36 kDa, Protein from Allochromatium vinosum DSM 180)
- Ubiquinone-8 (727 Da, Ligand)
- Photosynthetic lh1-rc complex from the purple sulfur phototrophic bacterium allochromatium vinosum (Complex from Allochromatium vinosum DSM 180)
- Menaquinone 8 (717 Da, Ligand)
- Photosynthetic reaction center cytochrome c subunit (41 kDa, Protein from Allochromatium vinosum DSM 180)
- Antenna complex alpha/beta subunit (5 kDa, Protein from Allochromatium vinosum DSM 180)
- Antenna complex alpha/beta subunit (5 kDa, Protein from Allochromatium vinosum DSM 180)
- Water (18 Da, Ligand)
- Lauryl dimethylamine-n-oxide (229 Da, Ligand)
- Palmitic acid (256 Da, Ligand)
- Bacteriopheophytin a (889 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Fe (iii) ion (55 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Cardiolipin (1 kDa, Ligand)
- Magnesium ion (24 Da, Ligand)
- Photosynthetic reaction center h subunit (28 kDa, Protein from Allochromatium vinosum DSM 180)
- Spirilloxanthin (596 Da, Ligand)
Resolution: 2.24 Å
EM Method: Single-particle
Fitted PDBs: 8wdv
Q-score: 0.658
Tani K, Kanno R, Harada A, Kobayashi Y, Minamino A, Takenaka S, Nakamura N, Ji XC, Purba ER, Hall M, Yu LJ, Madigan MT, Mizoguchi A, Iwasaki K, Humbel BM, Kimura Y, Wang-Otomo ZY
Commun Biol (2024) 7 pp. 176-176 [ Pubmed: 38347078 DOI: doi:10.1038/s42003-024-05863-w ]
- Antenna complex alpha/beta subunit (7 kDa, Protein from Allochromatium vinosum DSM 180)
- Antenna complex alpha/beta subunit (5 kDa, Protein from Allochromatium vinosum DSM 180)
- (1r)-2-{[{[(2s)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11e)-octadec-11-enoate (749 Da, Ligand)
- Antenna complex alpha/beta subunit (7 kDa, Protein from Allochromatium vinosum DSM 180)
- Bacteriochlorophyll a (911 Da, Ligand)
- Reaction center protein l chain (31 kDa, Protein from Allochromatium vinosum DSM 180)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- (2s)-3-hydroxypropane-1,2-diyl dihexadecanoate (568 Da, Ligand)
- Reaction center protein m chain (36 kDa, Protein from Allochromatium vinosum DSM 180)
- Ubiquinone-8 (727 Da, Ligand)
- Photosynthetic lh1-rc complex from the purple sulfur phototrophic bacterium allochromatium vinosum (Complex from Allochromatium vinosum DSM 180)
- Menaquinone 8 (717 Da, Ligand)
- Photosynthetic reaction center cytochrome c subunit (41 kDa, Protein from Allochromatium vinosum DSM 180)
- Antenna complex alpha/beta subunit (5 kDa, Protein from Allochromatium vinosum DSM 180)
- Antenna complex alpha/beta subunit (5 kDa, Protein from Allochromatium vinosum DSM 180)
- Water (18 Da, Ligand)
- Lauryl dimethylamine-n-oxide (229 Da, Ligand)
- Palmitic acid (256 Da, Ligand)
- Bacteriopheophytin a (889 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Fe (iii) ion (55 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Cardiolipin (1 kDa, Ligand)
- Magnesium ion (24 Da, Ligand)
- Photosynthetic reaction center h subunit (28 kDa, Protein from Allochromatium vinosum DSM 180)
- Spirilloxanthin (596 Da, Ligand)