Photosynthetic LH2-LH1 complex from the purple bacterium Halorhodospira halophila
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 8z81
Q-score: 0.682
Tani K, Nagashima KVP, Kojima R, Kondo M, Kanno R, Satoh I, Kawakami M, Hiwatashi N, Nakata K, Nagashima S, Inoue K, Isawa Y, Morishita R, Takaichi S, Purba ER, Hall M, Yu LJ, Madigan MT, Mizoguchi A, Humbel BM, Kimura Y, Nagasawa Y, Dewa T, Wang-Otomo ZY
Nat Commun (2025) 16 pp. 1410-1410 [ DOI: doi:10.1038/s41467-024-55811-9 Pubmed: 39915441 ]
- Bacteriochlorophyll a (911 Da, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Antenna complex, alpha/beta subunit (7 kDa, Protein from Halorhodospira halophila)
- Photosynthetic lh2-lh1 complex from the purple phototrophic bacterium halorhodospira halophila (Complex from Halorhodospira halophila)
- Antenna complex, alpha/beta subunit (7 kDa, Protein from Halorhodospira halophila)
- Antenna complex, alpha/beta subunit (7 kDa, Protein from Halorhodospira halophila)
- Antenna complex, alpha/beta subunit (6 kDa, Protein from Halorhodospira halophila)
- Antenna complex, alpha/beta subunit (7 kDa, Protein from Halorhodospira halophila)
- Spirilloxanthin (596 Da, Ligand)
- Antenna complex, alpha/beta subunit (8 kDa, Protein from Halorhodospira halophila)
- Lh2-lh1 complex of halorhodospira halophila (Complex from Halorhodospira halophila)
- (1r)-2-{[{[(2s)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11e)-octadec-11-enoate (749 Da, Ligand)
Photosynthetic LH1-RC-HiPIP complex from the purple bacterium Halorhodospira halophila
Tani K, Kanno R, Nagashima KVP, Kawakami M, Hiwatashi N, Nakata K, Nagashima S, Inoue K, Takaichi S, Purba ER, Hall M, Yu LJ, Madigan MT, Mizoguchi A, Humbel BM, Kimura Y, Wang-Otomo ZY
Commun Biol (2025) 8 pp. 42-42 [ Pubmed: 39799244 DOI: doi:10.1038/s42003-024-07421-w ]
- Bacteriochlorophyll a (911 Da, Ligand)
- Antenna complex, alpha/beta subunit (7 kDa, Protein from Halorhodospira halophila)
- Antenna complex, alpha/beta subunit (7 kDa, Protein from Halorhodospira halophila)
- Spirilloxanthin (596 Da, Ligand)
- Heme c (618 Da, Ligand)
- Cardiolipin (1 kDa, Ligand)
- Reaction center protein l chain (30 kDa, Protein from Halorhodospira halophila)
- High-potential iron-sulfur protein (15 kDa, Protein from Halorhodospira halophila)
- (2s)-3-hydroxypropane-1,2-diyl dihexadecanoate (568 Da, Ligand)
- Bacteriopheophytin a (889 Da, Ligand)
- (1r)-2-{[{[(2s)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11e)-octadec-11-enoate (749 Da, Ligand)
- Fe (iii) ion (55 Da, Ligand)
- Water (18 Da, Ligand)
- Palmitic acid (256 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Photosynthetic reaction centre, h-chain (30 kDa, Protein from Halorhodospira halophila)
- Lh1-rc-hipip complex of halorhodospira halophila (Complex from Halorhodospira halophila)
- Ubiquinone-8 (727 Da, Ligand)
- Menaquinone 8 (717 Da, Ligand)
- Antenna complex, alpha/beta subunit (7 kDa, Protein from Halorhodospira halophila)
- Photosynthetic lh1-rc-hipip triple complex from the purple phototrophic bacterium halorhodospira halophila (Complex from Halorhodospira halophila)
- Photosynthetic reaction center cytochrome c subunit (40 kDa, Protein from Halorhodospira halophila)
- Iron/sulfur cluster (351 Da, Ligand)
- Reaction center protein m chain (35 kDa, Protein from Halorhodospira halophila)
- Antenna complex, alpha/beta subunit (8 kDa, Protein from Halorhodospira halophila)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
Photosynthetic LH1-RC complex from the purple bacterium Halorhodospira halophila
Tani K, Kanno R, Nagashima KVP, Kawakami M, Hiwatashi N, Nakata K, Nagashima S, Inoue K, Takaichi S, Purba ER, Hall M, Yu LJ, Madigan MT, Mizoguchi A, Humbel BM, Kimura Y, Wang-Otomo ZY
Commun Biol (2025) 8 pp. 42-42 [ Pubmed: 39799244 DOI: doi:10.1038/s42003-024-07421-w ]
- Bacteriochlorophyll a (911 Da, Ligand)
- Antenna complex, alpha/beta subunit (7 kDa, Protein from Halorhodospira halophila)
- Antenna complex, alpha/beta subunit (7 kDa, Protein from Halorhodospira halophila)
- Spirilloxanthin (596 Da, Ligand)
- Heme c (618 Da, Ligand)
- Cardiolipin (1 kDa, Ligand)
- Reaction center protein l chain (30 kDa, Protein from Halorhodospira halophila)
- (2s)-3-hydroxypropane-1,2-diyl dihexadecanoate (568 Da, Ligand)
- Bacteriopheophytin a (889 Da, Ligand)
- (1r)-2-{[{[(2s)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11e)-octadec-11-enoate (749 Da, Ligand)
- Fe (iii) ion (55 Da, Ligand)
- Water (18 Da, Ligand)
- Lh1-rc complex of halorhodospira halophila (Complex from Halorhodospira halophila)
- Photosynthetic lh1-rc complex from the purple phototrophic bacterium halorhodospira halophila (Complex from Halorhodospira halophila)
- Palmitic acid (256 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Ubiquinone-8 (727 Da, Ligand)
- Menaquinone 8 (717 Da, Ligand)
- Antenna complex, alpha/beta subunit (7 kDa, Protein from Halorhodospira halophila)
- Photosynthetic reaction center h subunit (30 kDa, Protein from Halorhodospira halophila)
- Photosynthetic reaction center cytochrome c subunit (40 kDa, Protein from Halorhodospira halophila)
- Reaction center protein m chain (35 kDa, Protein from Halorhodospira halophila)
- Antenna complex, alpha/beta subunit (8 kDa, Protein from Halorhodospira halophila)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
Structure of photosynthetic LH1-RC super-complex of Rhodopila globiformis
Resolution: 2.24 Å
EM Method: Single-particle
Fitted PDBs: 7xxf
Q-score: 0.676
Tani K, Kanno R, Kurosawa K, Takaichi S, Nagashima KVP, Hall M, Yu LJ, Kimura Y, Madigan MT, Mizoguchi A, Humbel BM, Wang-Otomo ZY
Commun Biol (2022) 5 pp. 1197-1197 [ DOI: doi:10.1038/s42003-022-04174-2 Pubmed: 36344631 ]
- Bacteriochlorophyll a (911 Da, Ligand)
- Reaction center protein m chain (36 kDa, Protein from Rhodopila globiformis)
- Photosynthetic lh1-rc complex from the purple phototrophic bacterium rhodopila globiformis (400 kDa, Complex from Rhodopila globiformis)
- Heme c (618 Da, Ligand)
- Photosynthetic reaction center cytochrome c subunit (37 kDa, Protein from Rhodopila globiformis)
- Reaction center protein l chain (30 kDa, Protein from Rhodopila globiformis)
- Bacteriopheophytin a (889 Da, Ligand)
- (1r)-2-{[{[(2s)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11e)-octadec-11-enoate (749 Da, Ligand)
- Fe (iii) ion (55 Da, Ligand)
- Water (18 Da, Ligand)
- Menaquinone-9 (785 Da, Ligand)
- Ubiquinone-10 (863 Da, Ligand)
- Light-harvesting protein (7 kDa, Protein from Rhodopila globiformis)
- Photosynthetic reaction center h subunit (28 kDa, Protein from Rhodopila globiformis)
- Light-harvesting protein lh1 gamma-like (2 kDa, Protein from Rhodopila globiformis)
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (744 Da, Ligand)
- Light-harvesting protein (7 kDa, Protein from Rhodopila globiformis)
- Cardiolipin (1 kDa, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- (6~{e},8~{e},10~{e},12~{e},14~{e},16~{e},18~{e},20~{e},22~{e},24~{e},26~{e},28~{e})-2,31-dimethoxy-2,6,10,14,19,23,27,31-octamethyl-dotriaconta-6,8,10,12,14,16,18,20,22,24,26,28-dodecaen-5-one (612 Da, Ligand)