Structure of Bre1-nucleosome complex - state3
Resolution: 3.21 Å
EM Method: Single-particle
Fitted PDBs: 8t3t
Q-score: 0.535
Nat Struct Mol Biol (2023) 30 pp. 1623-1627 [ DOI: doi:10.1038/s41594-023-01137-x Pubmed: 37872231 ]
- Zinc ion (65 Da, Ligand)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- 601 dna strand 1 (44 kDa, DNA from synthetic construct)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- 601 dna strand 2 (45 kDa, DNA from synthetic construct)
- Histone h2a type 1 (13 kDa, Protein from Xenopus laevis)
- E3 ubiquitin-protein ligase bre1 (12 kDa, Protein from Saccharomyces cerevisiae)
- Bre1-nucleosome complex (Complex from Saccharomyces cerevisiae)
- Histone h2b (13 kDa, Protein from Xenopus laevis)
Structure of Bre1-nucleosome complex - state2
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 8t3w
Q-score: 0.52
Nat Struct Mol Biol (2023) 30 pp. 1623-1627 [ Pubmed: 37872231 DOI: doi:10.1038/s41594-023-01137-x ]
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Bre1-nucleosome complex (Complex from Saccharomyces cerevisiae)
- 601 dna strand 1 (44 kDa, DNA from synthetic construct)
- 601 dna strand 2 (45 kDa, DNA from synthetic construct)
- Histone h2b (13 kDa, Protein from Xenopus laevis)
- E3 ubiquitin-protein ligase bre1 (12 kDa, Protein from Saccharomyces cerevisiae)
- Histone h2a type 1 (13 kDa, Protein from Xenopus laevis)
- Zinc ion (65 Da, Ligand)
Structure of Bre1-nucleosome complex - state1
Resolution: 3.47 Å
EM Method: Single-particle
Fitted PDBs: 8t3y
Q-score: 0.503
Nat Struct Mol Biol (2023) 30 pp. 1623-1627 [ Pubmed: 37872231 DOI: doi:10.1038/s41594-023-01137-x ]
- 601 dna strand 2 (45 kDa, DNA from synthetic construct)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Bre1-nucleosome complex (Complex from Saccharomyces cerevisiae)
- E3 ubiquitin-protein ligase bre1 (12 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone h2b (13 kDa, Protein from Xenopus laevis)
- Histone h2a type 1 (13 kDa, Protein from Xenopus laevis)
- Zinc ion (65 Da, Ligand)
- 601 dna strand 1 (44 kDa, DNA from synthetic construct)
Resolution: 2.81 Å
EM Method: Single-particle
Fitted PDBs: 8gui
Q-score: 0.532
Onishi S, Uchiyama K, Sato K, Okada C, Kobayashi S, Hamada K, Nishizawa T, Nureki O, Ogata K, Sengoku T
Nat Commun (2024) 15 pp. 2580-2580 [ DOI: doi:10.1038/s41467-024-46910-8 Pubmed: 38519511 ]
- E3 ubiquitin-protein ligase bre1a (113 kDa, Protein from Homo sapiens)
- Dna (Complex)
- Bre1 (Complex from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from synthetic construct)
- Dna (147-mer) (45 kDa, DNA from synthetic construct)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h2a type 1 (13 kDa, Protein from Homo sapiens)
- Histone h2b type 1-j (14 kDa, Protein from Homo sapiens)
- E3 ubiquitin-protein ligase bre1b (113 kDa, Protein from Homo sapiens)
- Bre1-nucleosome complex (Complex)
- Zinc ion (65 Da, Ligand)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Histone (Complex from Homo sapiens)
Human nucleosome core particle (free form)
Resolution: 2.51 Å
EM Method: Single-particle
Fitted PDBs: 8guk
Q-score: 0.588
Onishi S, Uchiyama K, Sato K, Okada C, Kobayashi S, Hamada K, Nishizawa T, Nureki O, Ogata K, Sengoku T
Nat Commun (2024) 15 pp. 2580-2580 [ Pubmed: 38519511 DOI: doi:10.1038/s41467-024-46910-8 ]
- Hiistone (Complex)
- Dna (147-mer) (45 kDa, DNA from synthetic construct)
- Dna (Complex)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Dna (147-mer) (45 kDa, DNA from synthetic construct)
- Bre1-nucleosome complex (Complex from Homo sapiens)
- Histone h2b type 1-j (14 kDa, Protein from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Histone h2a type 1 (13 kDa, Protein from Homo sapiens)