Cryo-EM structure of porcine brain ventricles cilia doublet microtubule (48-nm periodicity)
Resolution: 3.65 Å
EM Method: Single-particle
Fitted PDBs: 9cpc
Q-score: 0.378
Leung MR, Sun C, Zeng J, Anderson JR, Niu Q, Huang W, Noteborn WEM, Brown A, Zeev-Ben-Mordehai T, Zhang R
Nature (2025) 637 pp. 1170-1177 [ DOI: doi:10.1038/s41586-024-08337-5 Pubmed: 39743588 ]
- Cilia and flagella associated protein 141 (12 kDa, Protein from Sus scrofa)
- Parkin coregulated (29 kDa, Protein from Sus scrofa)
- Cfap107/c1orf158 (23 kDa, Protein from Sus scrofa)
- Tektin (48 kDa, Protein from Sus scrofa)
- Chromosome 1 c9orf135 homolog (26 kDa, Protein from Sus scrofa)
- Cilia- and flagella-associated protein 53 (62 kDa, Protein from Sus scrofa)
- Ef-hand domain family member b (98 kDa, Protein from Sus scrofa)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Ciliary microtubule inner protein 2b (28 kDa, Protein from Sus scrofa)
- Outer dynein arm docking complex subunit 3 (72 kDa, Protein from Sus scrofa)
- Ef-hand calcium binding domain 1 (29 kDa, Protein from Sus scrofa)
- Cilia- and flagella-associated protein 52 (68 kDa, Protein from Sus scrofa)
- Tektin (52 kDa, Protein from Sus scrofa)
- Sperm acrosome associated 9 (25 kDa, Protein from Sus scrofa)
- Tubulin beta chain (49 kDa, Protein from Sus scrofa)
- Chromosome 1 c15orf65 homolog (13 kDa, Protein from Sus scrofa)
- Ef-hand domain-containing family member c2 (87 kDa, Protein from Sus scrofa)
- Ciliary microtubule inner protein 2b (30 kDa, Protein from Sus scrofa)
- Piercer of microtubule wall 1 (15 kDa, Protein from Sus scrofa)
- Sperm-associated antigen 8 isoform 1 (50 kDa, Protein from Sus scrofa)
- Cilia and flagella associated protein 77 (32 kDa, Protein from Sus scrofa)
- Cilia-and flagella-associated protein 96 (34 kDa, Protein from Sus scrofa)
- Efcab6 (167 kDa, Protein from Sus scrofa)
- Outer dynein arm-docking complex subunit 4 (78 kDa, Protein from Sus scrofa)
- Enkurin (29 kDa, Protein from Sus scrofa)
- Protein flattop (19 kDa, Protein from Sus scrofa)
- Guanosine-5'-triphosphate (523 Da, Ligand from Sus scrofa)
- Nucleoside diphosphate kinase homolog 7 (42 kDa, Protein from Sus scrofa)
- Tubulin alpha chain (49 kDa, Protein from Sus scrofa)
- Cilia- and flagella-associated protein 20 (22 kDa, Protein from Sus scrofa)
- Coiled-coil domain-containing protein 114 isoform x2 (80 kDa, Protein from Sus scrofa)
- Rib43a domain with coiled-coils 2 (45 kDa, Protein from Sus scrofa)
- Cilia and flagella associated protein 210 (66 kDa, Protein from Sus scrofa)
- Tektin (56 kDa, Protein from Sus scrofa)
- Cilia and flagella associated protein 161 (35 kDa, Protein from Sus scrofa)
- Ef-hand domain containing 1 (74 kDa, Protein from Sus scrofa)
- Tektin (49 kDa, Protein from Sus scrofa)
- Armadillo repeat-containing protein 4 isoform 1 (116 kDa, Protein from Sus scrofa)
- Meiosis-specific nuclear structural protein 1 (60 kDa, Protein from Sus scrofa)
- Cilia from porcine brain ventricles (Cellular component from Sus scrofa)
- Rib43a-like with coiled-coils protein 1 (44 kDa, Protein from Sus scrofa)
- Cilia and flagella associated protein 276 (19 kDa, Protein from Sus scrofa)
- Cilia and flagella associated protein 144 (16 kDa, Protein from Sus scrofa)
- Cilia- and flagella-associated protein 45 (65 kDa, Protein from Sus scrofa)
ASFV p72 in complex with Fab C9
Yu Q, Liang D, Fu W, Zhang L, Wang J, Zhang Z, Sun Y, Zhu D, Zheng B, Zhu L, Xiang Y, Zhao D, Wang X
Cell Discov (2024) 10 pp. 80-80 [ Pubmed: 39080252 DOI: doi:10.1038/s41421-024-00692-x ]
- B646l (78 kDa, Protein from African swine fever virus)
- Heavy chain of c9 (13 kDa, Protein from Sus scrofa)
- Asfv p72 in complex with fab c9 (Complex from African swine fever virus)
- Light chain of c9 (11 kDa, Protein from Sus scrofa)
Liu A, Liu Y, Chen G, Lyu W, Ye F, Wang J, Liao Q, Zhu L, Du Y, Ye RD
PLoS Biol (2024) 22 pp. e3002838-e3002838 [ DOI: doi:10.1371/journal.pbio.3002838 Pubmed: 39466725 ]
- Scfv16 (26 kDa, Protein from Mus musculus)
- Chemerin-like receptor 2 (34 kDa, Protein from Homo sapiens)
- Retinoic acid receptor responder protein 2 (1 kDa, Protein from Homo sapiens)
- Gpr1-c9-gi-scfv16 (Complex from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (6 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (37 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (40 kDa, Protein from Homo sapiens)
cryo-EM structure of sea urchin sperm doublet microtubule (48-nm periodicity)
Leung MR, Zeng J, Wang X, Roelofs MC, Huang W, Zenezini Chiozzi R, Hevler JF, Heck AJR, Dutcher SK, Brown A, Zhang R, Zeev-Ben-Mordehai T
Cell (2023) 186 pp. 2880- [ Pubmed: 37327785 DOI: doi:10.1016/j.cell.2023.05.026 ]
- Tex33 (40 kDa, Protein from Strongylocentrotus purpuratus)
- Tex43 (14 kDa, Protein from Strongylocentrotus purpuratus)
- Coiled-coil domain-containing protein 105 (49 kDa, Protein from Strongylocentrotus purpuratus)
- Cfap90(c5orf49) (19 kDa, Protein from Strongylocentrotus purpuratus)
- Rib35 (34 kDa, Protein from Strongylocentrotus purpuratus)
- Spata45 (9 kDa, Protein from Strongylocentrotus purpuratus)
- Cilia- and flagella-associated protein 97 (27 kDa, Protein from Strongylocentrotus purpuratus)
- Protein phosphatase 1 regulatory subunit 32 (52 kDa, Protein from Strongylocentrotus purpuratus)
- Flagellar protofilament ribbon protein rib74 (74 kDa, Protein from Strongylocentrotus purpuratus)
- C4orf45 (32 kDa, Protein from Strongylocentrotus purpuratus)
- Tex49 (17 kDa, Protein from Strongylocentrotus purpuratus)
- Cilia- and flagella-associated protein 45 (64 kDa, Protein from Strongylocentrotus purpuratus)
- Nucleoside diphosphate kinase (42 kDa, Protein from Strongylocentrotus purpuratus)
- Spata48 (23 kDa, Protein from Strongylocentrotus purpuratus)
- Outer dense fiber protein 3 (27 kDa, Protein from Strongylocentrotus purpuratus)
- Helo_like_n(loc577943) (34 kDa, Protein from Strongylocentrotus purpuratus)
- Magnesium ion (24 Da, Ligand)
- Cilia- and flagella-associated protein 77 (27 kDa, Protein from Strongylocentrotus purpuratus)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Cfap276 (19 kDa, Protein from Strongylocentrotus purpuratus)
- Tubulin alpha chain (50 kDa, Protein from Strongylocentrotus purpuratus)
- Flagellar flij protein (14 kDa, Protein from Strongylocentrotus purpuratus)
- Cfap144(fam183a) (16 kDa, Protein from Strongylocentrotus purpuratus)
- Meiosis-specific nuclear structural protein 1 (61 kDa, Protein from Strongylocentrotus purpuratus)
- Meiosis-specific nuclear structural protein 1 (17 kDa, Protein from Strongylocentrotus purpuratus)
- Cilia- and flagella-associated protein 52 (70 kDa, Protein from Strongylocentrotus purpuratus)
- Cilia- and flagella-associated protein 126 (15 kDa, Protein from Strongylocentrotus purpuratus)
- Cfap68(upf0686, c11orf1) (17 kDa, Protein from Strongylocentrotus purpuratus)
- Rib43a-like with coiled-coils protein 2 (45 kDa, Protein from Strongylocentrotus purpuratus)
- Cfa20 domain-containing protein (22 kDa, Protein from Strongylocentrotus purpuratus)
- Outer dense fiber protein 3 (30 kDa, Protein from Strongylocentrotus purpuratus)
- Fam166c (23 kDa, Protein from Strongylocentrotus purpuratus)
- Tektin (49 kDa, Protein from Strongylocentrotus purpuratus)
- C20orf85 (23 kDa, Protein from Strongylocentrotus purpuratus)
- Tex36(cfap95, c9orf135) (25 kDa, Protein from Strongylocentrotus purpuratus)
- Tex26(loc100888047) (19 kDa, Protein from Strongylocentrotus purpuratus)
- Cfap96(c4orf47) (33 kDa, Protein from Strongylocentrotus purpuratus)
- Pacrg (26 kDa, Protein from Strongylocentrotus purpuratus)
- Tektin (46 kDa, Protein from Strongylocentrotus purpuratus)
- Cilia- and flagella-associated protein 161 (32 kDa, Protein from Strongylocentrotus purpuratus)
- Testicular haploid expressed gene protein-like (30 kDa, Protein from Strongylocentrotus purpuratus)
- Coiled-coil domain-containing protein 81 (79 kDa, Protein from Strongylocentrotus purpuratus)
- Atp6v1fnb (21 kDa, Protein from Strongylocentrotus purpuratus)
- Sea urchin sperm doublet microtubule (Cellular component from Strongylocentrotus purpuratus)
- Ef-hand domain-containing family member c2 (85 kDa, Protein from Strongylocentrotus purpuratus)
- Tex49_homologue(loc580808) (20 kDa, Protein from Strongylocentrotus purpuratus)
- Protein fam166b (48 kDa, Protein from Strongylocentrotus purpuratus)
- Pierce1 (13 kDa, Protein from Strongylocentrotus purpuratus)
- Cfap107 (27 kDa, Protein from Strongylocentrotus purpuratus)
- Trichohyalin-plectin-homology domain-containing protein (62 kDa, Protein from Strongylocentrotus purpuratus)
- Saxo3(loc115918676) (37 kDa, Protein from Strongylocentrotus purpuratus)
- Tepp protein (21 kDa, Protein from Strongylocentrotus purpuratus)
- Ef-hand domain-containing protein (66 kDa, Protein from Strongylocentrotus purpuratus)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Enkurin domain-containing protein (30 kDa, Protein from Strongylocentrotus purpuratus)
- Sperm-associated antigen 8 (23 kDa, Protein from Strongylocentrotus purpuratus)
- Tektin (53 kDa, Protein from Strongylocentrotus purpuratus)
- Trichohyalin-plectin-homology domain-containing protein (65 kDa, Protein from Strongylocentrotus purpuratus)
- Tubulin beta chain (50 kDa, Protein from Strongylocentrotus purpuratus)
Human coronavirus OC43 spike glycoprotein ectodomain in complex with the 47C9 antibody Fab fragment
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7po5
Q-score: 0.306
Wang C, Hesketh EL, Shamorkina TM, Li W, Franken PJ, Drabek D, van Haperen R, Townend S, van Kuppeveld FJM, Grosveld F, Ranson NA, Snijder J, de Groot RJ, Hurdiss DL, Bosch BJ
Nat Commun (2022) 13 pp. 2921-2921 [ DOI: doi:10.1038/s41467-022-30658-0 Pubmed: 35614127 ]
- Spike glycoprotein (146 kDa, Protein from Human coronavirus OC43)
- 47c9 antibody heavy chain (13 kDa, Protein from Homo sapiens)
- 47c9 antibody light chain (11 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Human coronavirus oc43 spike glycoprotein ectodomain in complex with the 47c9 antibody fab fragment (583 kDa, Complex from Human coronavirus OC43)
cryo-EM structure of C9ORF72-SMCR8-WDR41
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6lt0
Q-score: 0.26
Tang D, Sheng J, Xu L, Zhan X, Liu J, Jiang H, Shu X, Liu X, Zhang T, Jiang L, Zhou C, Li W, Cheng W, Li Z, Wang K, Lu K, Yan C, Qi S
PNAS (2020) 117 pp. 9876-9883 [ Pubmed: 32303654 DOI: doi:10.1073/pnas.2002110117 ]
- Guanine nucleotide exchange protein smcr8 (105 kDa, Protein from Homo sapiens)
- Dimer of c9-orf72-smcr8-wdr41 (400 kDa, Complex from Homo sapiens)
- Wd repeat-containing protein 41 (51 kDa, Protein from Homo sapiens)
- Guanine nucleotide exchange c9orf72 (54 kDa, Protein from Homo sapiens)