Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8b0g
Q-score: 0.399
Couves EC, Gardner S, Voisin TB, Bickel JK, Stansfeld PJ, Tate EW, Bubeck D
Nat Commun (2023) 14 pp. 890-890 [ DOI: doi:10.1038/s41467-023-36441-z Pubmed: 36797260 ]
- Complement component c8 beta chain (67 kDa, Protein from Homo sapiens)
- Cd59 glycoprotein (9 kDa, Protein from Homo sapiens)
- Complement component c8 gamma chain (22 kDa, Protein from Homo sapiens)
- Complement component c6 (104 kDa, Protein from Homo sapiens)
- 2c9, cd59 inhibited mac complex (Complex from Homo sapiens)
- Complement component c7 (93 kDa, Protein from Homo sapiens)
- Complement c5 (188 kDa, Protein from Homo sapiens)
- Complement component c8 alpha chain (65 kDa, Protein from Homo sapiens)
- Complement component c9 (63 kDa, Protein from Homo sapiens)
2C9, C5b9-CD59 cryoEM structure
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8b0h
Q-score: 0.405
Couves EC, Gardner S, Voisin TB, Bickel JK, Stansfeld PJ, Tate EW, Bubeck D
Nat Commun (2023) 14 pp. 890-890 [ DOI: doi:10.1038/s41467-023-36441-z Pubmed: 36797260 ]
- Complement component c8 beta chain (67 kDa, Protein from Homo sapiens)
- Complement component c8 gamma chain (22 kDa, Protein from Homo sapiens)
- Complement component c6 (104 kDa, Protein from Homo sapiens)
- 2c9, cd59 inhibited mac complex (Complex)
- Complement component c7 (93 kDa, Protein from Homo sapiens)
- Cd59 glycoprotein (14 kDa, Protein from Homo sapiens)
- Complement component c8 alpha chain (65 kDa, Protein from Homo sapiens)
- Complement c5 (188 kDa, Protein from Homo sapiens)
- Cd59 glycoprotein (Complex from Homo sapiens)
- Complement component c9 (63 kDa, Protein from Homo sapiens)
- Complement components c5, c6, c7, c8 and c9 (Complex from Homo sapiens)
Human coronavirus OC43 spike glycoprotein ectodomain in complex with the 47C9 antibody Fab fragment
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7po5
Q-score: 0.306
Wang C, Hesketh EL, Shamorkina TM, Li W, Franken PJ, Drabek D, van Haperen R, Townend S, van Kuppeveld FJM, Grosveld F, Ranson NA, Snijder J, de Groot RJ, Hurdiss DL, Bosch BJ
Nat Commun (2022) 13 pp. 2921-2921 [ DOI: doi:10.1038/s41467-022-30658-0 Pubmed: 35614127 ]
- Spike glycoprotein (146 kDa, Protein from Human coronavirus OC43)
- 47c9 antibody heavy chain (13 kDa, Protein from Homo sapiens)
- 47c9 antibody light chain (11 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Human coronavirus oc43 spike glycoprotein ectodomain in complex with the 47c9 antibody fab fragment (583 kDa, Complex from Human coronavirus OC43)
Composite cryo-EM density map of the 48-nm repeat doublet microtubule from bovine tracheal cilia
Gui M, Farley H, Anujan P, Anderson JR, Maxwell DW, Whitchurch JB, Botsch JJ, Qiu T, Meleppattu S, Singh SK, Zhang Q, Thompson J, Lucas JS, Bingle CD, Norris DP, Roy S, Brown A
Cell (2021) 184 pp. 5791- [ Pubmed: 34715025 DOI: doi:10.1016/j.cell.2021.10.007 ]
- Tektin-2 (49 kDa, Protein from Bos taurus)
- Cilia and flagella associated protein 161 (36 kDa, Protein from Bos taurus)
- Coiled-coil domain containing 173 (65 kDa, Protein from Bos taurus)
- Sperm associated antigen 8 (51 kDa, Protein from Bos taurus)
- Cilia and flagella associated protein 52 (68 kDa, Protein from Bos taurus)
- Uncharacterized protein c1orf189 homolog (12 kDa, Protein from Bos taurus)
- Ef-hand calcium-binding domain-containing protein 1 (24 kDa, Protein from Bos taurus)
- Nucleoside diphosphate kinase 7 (42 kDa, Protein from Bos taurus)
- Tektin-3 (56 kDa, Protein from Bos taurus)
- Meiosis-specific nuclear structural protein 1 (60 kDa, Protein from Bos taurus)
- Magnesium ion (24 Da, Ligand)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Tubulin alpha-1d chain (50 kDa, Protein from Bos taurus)
- Cilia- and flagella-associated protein 20 (22 kDa, Protein from Bos taurus)
- Tektip1 (24 kDa, Protein from Bos taurus)
- Ef-hand domain family member b (97 kDa, Protein from Bos taurus)
- Doublet microtubule (Complex from Bos taurus)
- Pacrg protein (29 kDa, Protein from Bos taurus)
- Ttc25 protein (78 kDa, Protein from Bos taurus)
- Efcab6 (172 kDa, Protein from Bos taurus)
- Protein flattop (21 kDa, Protein from Bos taurus)
- Protein c9orf135 homolog (26 kDa, Protein from Bos taurus)
- Enkurin, trpc channel interacting protein (30 kDa, Protein from Bos taurus)
- Tektin-1 (48 kDa, Protein from Bos taurus)
- Cilia and flagella associated protein 45 (65 kDa, Protein from Bos taurus)
- Methyl-cpg binding domain protein 1 (62 kDa, Protein from Bos taurus)
- Coiled-coil domain containing 114 (77 kDa, Protein from Bos taurus)
- Chromosome 3 c1orf194 homolog (19 kDa, Protein from Bos taurus)
- Pierce1 (15 kDa, Protein from Bos taurus)
- Uncharacterized protein c1orf158 homolog (23 kDa, Protein from Bos taurus)
- Ef-hand domain containing 1 (74 kDa, Protein from Bos taurus)
- Efhc2 (85 kDa, Protein from Bos taurus)
- Tubulin beta-4b chain (49 kDa, Protein from Bos taurus)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Tektin-4 (52 kDa, Protein from Bos taurus)
- Armadillo repeat containing 4 (116 kDa, Protein from Bos taurus)
- Outer dynein arm-docking complex subunit 3 (72 kDa, Protein from Bos taurus)
- Pierce2 (13 kDa, Protein from Bos taurus)
- Protein fam166b (30 kDa, Protein from Bos taurus)
- Rib43a-like with coiled-coils protein 2 (44 kDa, Protein from Bos taurus)
Resolution: 3.54 Å
EM Method: Single-particle
Fitted PDBs: 7nyc
Q-score: 0.226
Menny A, Lukassen MV, Couves EC, Franc V, Heck AJR, Bubeck D
Nat Commun (2021) 12 pp. 6086-6086 [ DOI: doi:10.1038/s41467-021-26366-w Pubmed: 34667172 ]
- 3c9-smac (1 MDa, Complex from Homo sapiens)
- Alpha-d-mannopyranose (180 Da, Ligand)
- Complement component c8 alpha chain (61 kDa, Protein from Homo sapiens)
- Complement c5 (186 kDa, Protein from Homo sapiens)
- Complement component c8 gamma chain (20 kDa, Protein from Homo sapiens)
- Alpha-l-fucopyranose (164 Da, Ligand)
- Complement component c6 (102 kDa, Protein from Homo sapiens)
- Complement component c8 beta chain (61 kDa, Protein from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Complement component c9 (61 kDa, Protein from Homo sapiens)
- Complement component c7 (91 kDa, Protein from Homo sapiens)
Resolution: 3.27 Å
EM Method: Single-particle
Fitted PDBs: 7nyd
Q-score: 0.335
Menny A, Lukassen MV, Couves EC, Franc V, Heck AJR, Bubeck D
Nat Commun (2021) 12 pp. 6086-6086 [ DOI: doi:10.1038/s41467-021-26366-w Pubmed: 34667172 ]
- Alpha-d-mannopyranose (180 Da, Ligand)
- Complement component c8 alpha chain (61 kDa, Protein from Homo sapiens)
- Complement c5 (186 kDa, Protein from Homo sapiens)
- Complement component c8 gamma chain (20 kDa, Protein from Homo sapiens)
- Alpha-l-fucopyranose (164 Da, Ligand)
- Complement component c6 (102 kDa, Protein from Homo sapiens)
- 2c9-smac (1 MDa, Complex from Homo sapiens)
- Complement component c8 beta chain (61 kDa, Protein from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Complement component c9 (61 kDa, Protein from Homo sapiens)
- Complement component c7 (91 kDa, Protein from Homo sapiens)
SARS-CoV-2 Spike (2P) in complex with C12C9 Fab (RBD local reconstruction)
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7n62
Q-score: 0.428
Tong P, Gautam A, Windsor I, Travers M, Chen Y, Garcia N, Whiteman NB, McKay LGA, Lelis FJN, Habibi S, Cai Y, Rennick LJ, Duprex WP, McCarthy KR, Lavine CL, Zuo T, Lin J, Zuiani A, Feldman J, MacDonald EA, Hauser BM, Griffths A, Seaman MS, Schmidt AG, Chen B, Neuberg D, Bajic G, Harrison SC, Wesemann DR
bioRxiv (2021) [ Pubmed: 33758863 DOI: doi:10.1101/2021.03.10.434840 ]
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike in complex with 12-c9 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- C12c9 fab heavy chain (24 kDa, Protein from Homo sapiens)
- C12c9 fab light chain (23 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Cryo-EM structure of SMCR8-C9orf72-WDR41 complex
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6v4u
Q-score: 0.296
Su MY, Fromm SA, Zoncu R, Hurley JH
Nature (2020) 585 pp. 251-255 [ DOI: doi:10.1038/s41586-020-2633-x Pubmed: 32848248 ]
- Guanine nucleotide exchange protein smcr8 (105 kDa, Protein from Homo sapiens)
- Complex of smcr8-c9orf72-wdr41 (120 kDa, Complex from Homo sapiens)
- Wd repeat-containing protein 41 (51 kDa, Protein from Homo sapiens)
- Guanine nucleotide exchange c9orf72 (54 kDa, Protein from Homo sapiens)
cryo-EM structure of C9ORF72-SMCR8-WDR41
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6lt0
Q-score: 0.26
Tang D, Sheng J, Xu L, Zhan X, Liu J, Jiang H, Shu X, Liu X, Zhang T, Jiang L, Zhou C, Li W, Cheng W, Li Z, Wang K, Lu K, Yan C, Qi S
PNAS (2020) 117 pp. 9876-9883 [ Pubmed: 32303654 DOI: doi:10.1073/pnas.2002110117 ]
- Guanine nucleotide exchange protein smcr8 (105 kDa, Protein from Homo sapiens)
- Dimer of c9-orf72-smcr8-wdr41 (400 kDa, Complex from Homo sapiens)
- Wd repeat-containing protein 41 (51 kDa, Protein from Homo sapiens)
- Guanine nucleotide exchange c9orf72 (54 kDa, Protein from Homo sapiens)
OPEN CONFORMATION OF THE MEMBRANE ATTACK COMPLEX
Resolution: 5.6 Å
EM Method: Single-particle
Fitted PDBs: 6h03
Q-score: 0.156
Menny A, Serna M, Boyd CM, Gardner S, Joseph AP, Morgan BP, Topf M, Brooks NJ, Bubeck D
Nat Commun (2018) 9 pp. 5316-5316 [ DOI: doi:10.1038/s41467-018-07653-5 Pubmed: 30552328 ]
- C6 (Complex from Homo sapiens)
- C8 gamma (Complex from Homo sapiens)
- C8 alpha (Complex from Homo sapiens)
- C9 (Complex from Homo sapiens)
- Complement component c8 alpha chain (61 kDa, Protein from Homo sapiens)
- Membrane attack complex (69 kDa, Complex from Homo sapiens)
- Complement component c8 gamma chain (20 kDa, Protein from Homo sapiens)
- Complement c5,complement c5 (177 kDa, Protein from Homo sapiens)
- Complement component c6 (102 kDa, Protein from Homo sapiens)
- Complement component c7 (91 kDa, Protein from Homo sapiens)
- Complement component c8 beta chain (61 kDa, Protein from Homo sapiens)
- C8 beta (Complex from Homo sapiens)
- Complement component c9 (61 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- C7 (Complex from Homo sapiens)
- C5b (Complex from Homo sapiens)