Structure of Cas7-11-crRNA in complex with TPR-CHAT
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7y8t
Q-score: 0.567
Wang S, Guo M, Zhu Y, Lin Z, Huang Z
Cell Res (2022) 32 pp. 1128-1131 [ Pubmed: 36280712 DOI: doi:10.1038/s41422-022-00738-3 ]
- Rna (Complex)
- Zinc ion (65 Da, Ligand)
- Tpr-chat (Complex from Candidatus Scalindua brodae)
- Rna (37-mer) (11 kDa, RNA from Candidatus Scalindua brodae)
- Type iii-e crispr-cas effector (Complex)
- Ramp superfamily protein (197 kDa, Protein from Candidatus Scalindua brodae)
- Chat domain protein (82 kDa, Protein from Candidatus Scalindua brodae)
Structure of Cas7-11-crRNA-tgRNA in complex with TPR-CHAT
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7y8y
Q-score: 0.51
Wang S, Guo M, Zhu Y, Lin Z, Huang Z
Cell Res (2022) 32 pp. 1128-1131 [ Pubmed: 36280712 DOI: doi:10.1038/s41422-022-00738-3 ]
- Rna (Complex)
- Zinc ion (65 Da, Ligand)
- Tpr-chat (Complex from Candidatus Scalindua brodae)
- Rna (37-mer) (11 kDa, RNA from Candidatus Scalindua brodae)
- Rna (5'-r(p*cp*gp*gp*gp*gp*cp*ap*gp*ap*ap*ap*ap*up*up*gp*gp*ap*c)-3') (5 kDa, RNA from Candidatus Scalindua brodae)
- Type iii-e crispr-cas effector (Complex)
- Ramp superfamily protein (197 kDa, Protein from Candidatus Scalindua brodae)
- Chat domain protein (82 kDa, Protein from Candidatus Scalindua brodae)
Resolution: 2.71 Å
EM Method: Single-particle
Fitted PDBs: 8d9f
Q-score: 0.512
Hu C, van Beljouw SPB, Nam KH, Schuler G, Ding F, Cui Y, Rodriguez-Molina A, Haagsma AC, Valk M, Pabst M, Brouns SJJ, Ke A
Science (2022) 377 pp. 1278-1285 [ Pubmed: 36007061 DOI: doi:10.1126/science.add5064 ]
- Zinc ion (65 Da, Ligand)
- Ramp superfamily protein (142 kDa, Protein from Candidatus Scalindua brodae)
- Chat domain protein (77 kDa, Protein from Candidatus Scalindua brodae)
- Gramp-tpr-chat craspase (Complex from Candidatus Scalindua brodae)
- Rna (33-mer) (10 kDa, RNA from Candidatus Scalindua brodae)
gRAMP-TPR-CHAT Non match PFS target RNA(Craspase)
Resolution: 2.57 Å
EM Method: Single-particle
Fitted PDBs: 8d9g
Q-score: 0.547
Hu C, van Beljouw SPB, Nam KH, Schuler G, Ding F, Cui Y, Rodriguez-Molina A, Haagsma AC, Valk M, Pabst M, Brouns SJJ, Ke A
Science (2022) 377 pp. 1278-1285 [ Pubmed: 36007061 DOI: doi:10.1126/science.add5064 ]
- Zinc ion (65 Da, Ligand)
- Chat domain protein (78 kDa, Protein from Candidatus Scalindua brodae)
- Gramp-tpr-chat with non match pfs target rna craspase (Complex from Candidatus Scalindua brodae)
- Rna (36-mer) (11 kDa, RNA from Candidatus Scalindua brodae)
- Ramp superfamily protein (147 kDa, Protein from Candidatus Scalindua brodae)
- Rna (5'-r(p*up*cp*cp*gp*gp*gp*gp*cp*ap*gp*ap*ap*ap*ap*up*up*gp*gp*ap*cp*gp*ap*u)-3') (7 kDa, RNA from Candidatus Scalindua brodae)
gRAMP-TPR-CHAT match PFS target RNA(Craspase)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8d9h
Q-score: 0.426
Hu C, van Beljouw SPB, Nam KH, Schuler G, Ding F, Cui Y, Rodriguez-Molina A, Haagsma AC, Valk M, Pabst M, Brouns SJJ, Ke A
Science (2022) 377 pp. 1278-1285 [ Pubmed: 36007061 DOI: doi:10.1126/science.add5064 ]
- Chat domain protein (76 kDa, Protein from Candidatus Scalindua brodae)
- Phosphate ion (94 Da, Ligand)
- Ramp superfamily protein (145 kDa, Protein from Candidatus Scalindua brodae)
- Zinc ion (65 Da, Ligand)
- Rna (5'-r(p*up*cp*cp*gp*gp*gp*gp*cp*ap*gp*ap*ap*ap*ap*up*up*gp*gp*gp*u)-3') (6 kDa, RNA from Candidatus Scalindua brodae)
- Gramp-tpr-chat with match pfs target rna craspase (Complex from Candidatus Scalindua brodae)
- Rna (36-mer) (11 kDa, RNA from Candidatus Scalindua brodae)
Structure of the SbCas7-11-crRNA-NTR-Csx29 complex
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8gu6
Q-score: 0.496
Wang X, Yu G, Wen Y, An Q, Li X, Liao F, Lian C, Zhang K, Yin H, Wei Y, Deng Z, Zhang H
Nucleic Acids Res (2022) 50 pp. 12913-12923 [ DOI: doi:10.1093/nar/gkac1151 Pubmed: 36484100 ]
- Zinc ion (65 Da, Ligand)
- Ternary complex (Complex from Candidatus Scalindua brodae)
- Ramp superfamily protein (197 kDa, Protein from Candidatus Scalindua brodae)
- Rna (5'-r(p*gp*gp*gp*gp*cp*ap*gp*ap*ap*ap*ap*up*up*gp*gp*gp*u)-3') (5 kDa, RNA from Candidatus Scalindua brodae)
- Rna (33-mer) (10 kDa, RNA from Candidatus Scalindua brodae)
- Chat domain protein (82 kDa, Protein from Candidatus Scalindua brodae)
Resolution: 2.93 Å
EM Method: Single-particle
Fitted PDBs: 7y83
Q-score: 0.53
Cui N, Zhang JT, Li Z, Liu XY, Wang C, Huang H, Jia N
Nat Commun (2022) 13 pp. 7549-7549 [ Pubmed: 36477448 DOI: doi:10.1038/s41467-022-35275-5 ]
- Type iii-e crispr gramp-crrna binary complex (Complex from Candidatus Scalindua brodae)
- Ramp superfamily protein (198 kDa, Protein from Candidatus Scalindua brodae)
- Zinc ion (65 Da, Ligand)
- Gramp (Complex from Candidatus Scalindua brodae)
- Crrna (Complex)
- Non-self rna (18 kDa, RNA from Candidatus Scalindua brodae)
- Tpr-chat (Complex)
- Crrna (35 kDa, RNA from Candidatus Scalindua brodae)
- Chat domain protein (85 kDa, Protein from Candidatus Scalindua brodae)
- Magnesium ion (24 Da, Ligand)
- Non-self rna target (Complex from Candidatus Scalindua brodae)
CryoEM structure of type III-E CRISPR gRAMP-crRNA in complex with TPR-CHAT
Resolution: 2.61 Å
EM Method: Single-particle
Fitted PDBs: 7y84
Q-score: 0.614
Cui N, Zhang JT, Li Z, Liu XY, Wang C, Huang H, Jia N
Nat Commun (2022) 13 pp. 7549-7549 [ Pubmed: 36477448 DOI: doi:10.1038/s41467-022-35275-5 ]
- Ramp superfamily protein (198 kDa, Protein from Candidatus Scalindua brodae)
- Zinc ion (65 Da, Ligand)
- Crrna (Complex)
- Type iii-e crispr gramp-crrna in complex with tpr-chat (Complex from Candidatus Scalindua brodae)
- Crrna (35 kDa, RNA from Candidatus Scalindua brodae)
- Ramp superfamily protein/chat (Complex from Candidatus Scalindua brodae)
- Chat domain protein (85 kDa, Protein from Candidatus Scalindua brodae)
- Magnesium ion (24 Da, Ligand)
CryoEM structure of type III-E CRISPR gRAMP-crRNA in complex with TPR-CHAT bound to self RNA target
Resolution: 2.73 Å
EM Method: Single-particle
Fitted PDBs: 7y85
Q-score: 0.57
Cui N, Zhang JT, Li Z, Liu XY, Wang C, Huang H, Jia N
Nat Commun (2022) 13 pp. 7549-7549 [ Pubmed: 36477448 DOI: doi:10.1038/s41467-022-35275-5 ]
- Type iii-e crispr gramp-crrna binary complex (Complex from Candidatus Scalindua brodae)
- Ramp superfamily protein (198 kDa, Protein from Candidatus Scalindua brodae)
- Zinc ion (65 Da, Ligand)
- Gramp (Complex from Candidatus Scalindua brodae)
- Crrna (Complex)
- Self rna target (Complex from Candidatus Scalindua brodae)
- Tpr-chat (Complex)
- Crrna (35 kDa, RNA from Candidatus Scalindua brodae)
- Chat domain protein (85 kDa, Protein from Candidatus Scalindua brodae)
- Magnesium ion (24 Da, Ligand)
- Self rna target (18 kDa, RNA from Candidatus Scalindua brodae)
Cryo-EM structure of a bacterial protein complex
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7x8a
Q-score: 0.545
Yu G, Wang X, Zhang Y, An Q, Wen Y, Li X, Yin H, Deng Z, Zhang H
Nat Microbiol (2022) 7 pp. 2078-2088 [ Pubmed: 36302881 DOI: doi:10.1038/s41564-022-01256-z ]
- Zinc ion (65 Da, Ligand)
- Complex (Complex from Candidatus Scalindua brodae)
- Ramp superfamily protein (197 kDa, Protein from Candidatus Scalindua brodae)
- Rna (33-mer) (10 kDa, RNA from Candidatus Scalindua brodae)
- Chat domain protein (82 kDa, Protein from Candidatus Scalindua brodae)