V gamma9 V delta2 TCR and CD3 complex in LMNG
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8jc0
Q-score: 0.438
Xin W, Huang B, Chi X, Liu Y, Xu M, Zhang Y, Li X, Su Q, Zhou Q
Nature (2024) 630 pp. 222-229 [ DOI: doi:10.1038/s41586-024-07439-4 Pubmed: 38657677 ]
- T-cell surface glycoprotein cd3 gamma chain (20 kDa, Protein from Homo sapiens)
- T cell receptor delta variable 2,t cell receptor delta constant (34 kDa, Protein from Homo sapiens)
- V gamma9 v delta2 t cell receptor in complex with cd3 (Complex from Homo sapiens)
- T-cell surface glycoprotein cd3 delta chain (18 kDa, Protein from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- T-cell surface glycoprotein cd3 epsilon chain (23 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 zeta chain (21 kDa, Protein from Homo sapiens)
- T cell receptor gamma variable 9,t cell receptor gamma constant 1 (37 kDa, Protein from Homo sapiens)
Vgamma5Vdelta1 EH TCR-CD3 complex
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 8wxe
Q-score: 0.329
Xin W, Huang B, Chi X, Liu Y, Xu M, Zhang Y, Li X, Su Q, Zhou Q
Nature (2024) 630 pp. 222-229 [ DOI: doi:10.1038/s41586-024-07439-4 Pubmed: 38657677 ]
- T-cell surface glycoprotein cd3 gamma chain (20 kDa, Protein from Homo sapiens)
- Signal peptide,flag tag,t cell receptor gamma variable 5,t cell receptor gamma constant 1 (37 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 delta chain (18 kDa, Protein from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- T-cell surface glycoprotein cd3 epsilon chain (23 kDa, Protein from Homo sapiens)
- Signal peptide,flag tag,t cell receptor delta variable 1,t cell receptor delta constant (34 kDa, Protein from Homo sapiens)
- T cell receptor delta 1 gamma 5 eh mutant (Complex from Homo sapiens)
- T-cell surface glycoprotein cd3 zeta chain (21 kDa, Protein from Homo sapiens)
T cell receptor delta 2 gamma 9 with F283A, F290A, and F291A
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8wy0
Q-score: 0.402
Xin W, Huang B, Chi X, Liu Y, Xu M, Zhang Y, Li X, Su Q, Zhou Q
Nature (2024) 630 pp. 222-229 [ DOI: doi:10.1038/s41586-024-07439-4 Pubmed: 38657677 ]
- T-cell surface glycoprotein cd3 gamma chain (20 kDa, Protein from Homo sapiens)
- Signal peptide,flag tag,t cell receptor delta variable 2,t cell receptor delta constant (34 kDa, Protein from Homo sapiens)
- Signal peptide,flag tag,t cell receptor gamma variable 9,t cell receptor gamma constant 1 (37 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 delta chain (18 kDa, Protein from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- T-cell surface glycoprotein cd3 epsilon chain (23 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 zeta chain (21 kDa, Protein from Homo sapiens)
- T cell receptor delta 2 gamma 9 with f283a, f290a, f291a (Cell from Homo sapiens)
T cell receptor V delta2 V gamma9 in GDN
Resolution: 4.12 Å
EM Method: Single-particle
Fitted PDBs: 8yc0
Q-score: 0.349
Xin W, Huang B, Chi X, Liu Y, Xu M, Zhang Y, Li X, Su Q, Zhou Q
Nature (2024) 630 pp. 222-229 [ DOI: doi:10.1038/s41586-024-07439-4 Pubmed: 38657677 ]
- T-cell surface glycoprotein cd3 gamma chain (20 kDa, Protein from Homo sapiens)
- Tcr v delta2 v gamma 9 in complex with cd3 in gdn (Cell from Homo sapiens)
- T cell receptor delta variable 2,t cell receptor delta constant (34 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 delta chain (18 kDa, Protein from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- T-cell surface glycoprotein cd3 epsilon chain (23 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 zeta chain (21 kDa, Protein from Homo sapiens)
- T cell receptor gamma variable 9,t cell receptor gamma constant 1 (37 kDa, Protein from Homo sapiens)
CryoEM structure of NaDC1 with Citrate
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8w6c
Q-score: 0.631
Chi X, Chen Y, Li Y, Dai L, Zhang Y, Shen Y, Chen Y, Shi T, Yang H, Wang Z, Yan R
Sci Adv (2024) 10 pp. eadl3685-eadl3685 [ Pubmed: 38552027 DOI: doi:10.1126/sciadv.adl3685 ]
- Water (18 Da, Ligand)
- Sodium ion (22 Da, Ligand)
- Cholesterol hemisuccinate (486 Da, Ligand)
- Structure of nadc1 in complex with citrate (Complex from Homo sapiens)
- Citric acid (192 Da, Ligand)
- Solute carrier family 13 member 2 (65 kDa, Protein from Homo sapiens)
- 1,2-diacyl-glycerol-3-sn-phosphate (704 Da, Ligand)
CryoEM structure of NaDC1 in apo state
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 8w6d
Q-score: 0.662
Chi X, Chen Y, Li Y, Dai L, Zhang Y, Shen Y, Chen Y, Shi T, Yang H, Wang Z, Yan R
Sci Adv (2024) 10 pp. eadl3685-eadl3685 [ Pubmed: 38552027 DOI: doi:10.1126/sciadv.adl3685 ]
- Sodium ion (22 Da, Ligand)
- Cholesterol hemisuccinate (486 Da, Ligand)
- Solute carrier family 13 member 2 (65 kDa, Protein from Homo sapiens)
- Structure of nadc1 in apo state (Complex from Homo sapiens)
- 1,2-diacyl-glycerol-3-sn-phosphate (704 Da, Ligand)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8w6g
Q-score: 0.552
Chi X, Chen Y, Li Y, Dai L, Zhang Y, Shen Y, Chen Y, Shi T, Yang H, Wang Z, Yan R
Sci Adv (2024) 10 pp. eadl3685-eadl3685 [ Pubmed: 38552027 DOI: doi:10.1126/sciadv.adl3685 ]
- Cholesterol hemisuccinate (486 Da, Ligand)
- Nadc1 in complex with inhibitor n-(p-amylcinnamoyl)anthranilic acid (aca) (Complex from Homo sapiens)
- 2-[[(~{e})-3-(4-pentylphenyl)prop-2-enoyl]amino]benzoic acid (337 Da, Ligand)
- Solute carrier family 13 member 2 (65 kDa, Protein from Homo sapiens)
- 1,2-diacyl-glycerol-3-sn-phosphate (704 Da, Ligand)
NaS1 with sulfate - IN/IN state
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8w6h
Q-score: 0.567
Chi X, Chen Y, Li Y, Dai L, Zhang Y, Shen Y, Chen Y, Shi T, Yang H, Wang Z, Yan R
Sci Adv (2024) 10 pp. eadl3685-eadl3685 [ Pubmed: 38552027 DOI: doi:10.1126/sciadv.adl3685 ]
- Sodium ion (22 Da, Ligand)
- Sulfate ion (96 Da, Ligand)
- Cholesterol (386 Da, Ligand)
- Solute carrier family 13 member 1 (67 kDa, Protein from Homo sapiens)
- Dimer of nas1 with sulfate in in/in state (Complex from Homo sapiens)
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8w6o
Q-score: 0.58
Chi X, Chen Y, Li Y, Dai L, Zhang Y, Shen Y, Chen Y, Shi T, Yang H, Wang Z, Yan R
Sci Adv (2024) 10 pp. eadl3685-eadl3685 [ Pubmed: 38552027 DOI: doi:10.1126/sciadv.adl3685 ]
- Sodium ion (22 Da, Ligand)
- Dimer of nas1 in in/in state (Complex from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- Solute carrier family 13 member 1 (67 kDa, Protein from Homo sapiens)
Down-regulated in adenoma in complex with TQR1122
Resolution: 2.76 Å
EM Method: Single-particle
Fitted PDBs: 7xuh
Q-score: 0.586
Li XR, Chi XM, Zhang YY, Zhou Q
To Be Published
- Water (18 Da, Ligand)
- Cholesterol hemisuccinate (486 Da, Ligand)
- Chloride anion exchanger (84 kDa, Protein from Homo sapiens)
- Down-regulated in adenoma (Cell from Homo sapiens)
- 2-[4,8-dimethyl-2-oxidanylidene-7-[[3-(trifluoromethyl)phenyl]methoxy]chromen-3-yl]ethanoic acid (406 Da, Ligand)