V gamma9 V delta2 TCR and CD3 complex in LMNG
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8jc0
Q-score: 0.438
Xin W, Huang B, Chi X, Liu Y, Xu M, Zhang Y, Li X, Su Q, Zhou Q
Nature (2024) 630 pp. 222-229 [ DOI: doi:10.1038/s41586-024-07439-4 Pubmed: 38657677 ]
- T cell receptor delta variable 2,t cell receptor delta constant (34 kDa, Protein from Homo sapiens)
- V gamma9 v delta2 t cell receptor in complex with cd3 (Complex from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- T-cell surface glycoprotein cd3 gamma chain (20 kDa, Protein from Homo sapiens)
- T cell receptor gamma variable 9,t cell receptor gamma constant 1 (37 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 epsilon chain (23 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 delta chain (18 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 zeta chain (21 kDa, Protein from Homo sapiens)
Vgamma5Vdelta1 EH TCR-CD3 complex
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 8wxe
Q-score: 0.329
Xin W, Huang B, Chi X, Liu Y, Xu M, Zhang Y, Li X, Su Q, Zhou Q
Nature (2024) 630 pp. 222-229 [ DOI: doi:10.1038/s41586-024-07439-4 Pubmed: 38657677 ]
- T cell receptor delta 1 gamma 5 eh mutant (Complex from Homo sapiens)
- Signal peptide,flag tag,t cell receptor delta variable 1,t cell receptor delta constant (34 kDa, Protein from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- Signal peptide,flag tag,t cell receptor gamma variable 5,t cell receptor gamma constant 1 (37 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 gamma chain (20 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 epsilon chain (23 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 delta chain (18 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 zeta chain (21 kDa, Protein from Homo sapiens)
T cell receptor delta 2 gamma 9 with F283A, F290A, and F291A
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8wy0
Q-score: 0.402
Xin W, Huang B, Chi X, Liu Y, Xu M, Zhang Y, Li X, Su Q, Zhou Q
Nature (2024) 630 pp. 222-229 [ Pubmed: 38657677 DOI: doi:10.1038/s41586-024-07439-4 ]
- T-cell surface glycoprotein cd3 delta chain (18 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 gamma chain (20 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 zeta chain (21 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 epsilon chain (23 kDa, Protein from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- Signal peptide,flag tag,t cell receptor delta variable 2,t cell receptor delta constant (34 kDa, Protein from Homo sapiens)
- Signal peptide,flag tag,t cell receptor gamma variable 9,t cell receptor gamma constant 1 (37 kDa, Protein from Homo sapiens)
- T cell receptor delta 2 gamma 9 with f283a, f290a, f291a (Cell from Homo sapiens)
T cell receptor V delta2 V gamma9 in GDN
Resolution: 4.12 Å
EM Method: Single-particle
Fitted PDBs: 8yc0
Q-score: 0.349
Xin W, Huang B, Chi X, Liu Y, Xu M, Zhang Y, Li X, Su Q, Zhou Q
Nature (2024) 630 pp. 222-229 [ DOI: doi:10.1038/s41586-024-07439-4 Pubmed: 38657677 ]
- T cell receptor delta variable 2,t cell receptor delta constant (34 kDa, Protein from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- Tcr v delta2 v gamma 9 in complex with cd3 in gdn (Cell from Homo sapiens)
- T-cell surface glycoprotein cd3 gamma chain (20 kDa, Protein from Homo sapiens)
- T cell receptor gamma variable 9,t cell receptor gamma constant 1 (37 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 epsilon chain (23 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 delta chain (18 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 zeta chain (21 kDa, Protein from Homo sapiens)
Choline transporter-like protein 1
Resolution: 3.86 Å
EM Method: Single-particle
Fitted PDBs: 7wwb
Q-score: 0.37
Xie T, Chi X, Huang B, Ye F, Zhou Q, Huang J
Structure (2022) 30 pp. 1321-1330.e5 [ DOI: doi:10.1016/j.str.2022.05.015 Pubmed: 35700727 ]
- Cholesterol (386 Da, Ligand)
- Choline ion (104 Da, Ligand)
- Choline transporter-like protein 1 (73 kDa, Protein from Homo sapiens)
- Choline transporter-like protein 1 in complex with choline (Cell from Homo sapiens)
Cryo EM structure of a Na+-bound Na+,K+-ATPase in the E1 state
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7e1z
Q-score: 0.479
Guo Y, Zhang Y, Yan R, Huang B, Ye F, Wu L, Chi X, Shi Y, Zhou Q
Nat Commun (2022) 13 pp. 3957-3957 [ Pubmed: 35803952 DOI: doi:10.1038/s41467-022-31602-y ]
- Sodium/potassium-transporting atpase subunit beta-1 (35 kDa, Protein from Homo sapiens)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Water (18 Da, Ligand)
- Sodium/potassium-transporting atpase subunit gamma (7 kDa, Protein from Homo sapiens)
- Sodium/potassium-transporting atpase subunit alpha-1 (113 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Cholesterol hemisuccinate (486 Da, Ligand)
- Cryo em structure of a na+-bound na+,k+-atpase in the e1 state (Complex from Homo sapiens)
- Sodium ion (22 Da, Ligand)
Cryo EM structure of a K+-bound Na+,K+-ATPase in the E2 state
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7e20
Q-score: 0.563
Guo Y, Zhang Y, Yan R, Huang B, Ye F, Wu L, Chi X, Shi Y, Zhou Q
Nat Commun (2022) 13 pp. 3957-3957 [ Pubmed: 35803952 DOI: doi:10.1038/s41467-022-31602-y ]
- Sodium/potassium-transporting atpase subunit beta-1 (35 kDa, Protein from Homo sapiens)
- Potassium ion (39 Da, Ligand)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Cryo em structure of a k+-bound na+,k+-atpase in the e2 state (Complex from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Water (18 Da, Ligand)
- Sodium/potassium-transporting atpase subunit gamma (7 kDa, Protein from Homo sapiens)
- Sodium/potassium-transporting atpase subunit alpha-1 (113 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Cholesterol hemisuccinate (486 Da, Ligand)
Cryo EM structure of a Na+-bound Na+,K+-ATPase in the E1 state with ATP-gamma-S
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7e21
Q-score: 0.535
Guo Y, Zhang Y, Yan R, Huang B, Ye F, Wu L, Chi X, Shi Y, Zhou Q
Nat Commun (2022) 13 pp. 3957-3957 [ Pubmed: 35803952 DOI: doi:10.1038/s41467-022-31602-y ]
- Sodium/potassium-transporting atpase subunit beta-1 (35 kDa, Protein from Homo sapiens)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Water (18 Da, Ligand)
- Sodium/potassium-transporting atpase subunit gamma (7 kDa, Protein from Homo sapiens)
- Cryo em structure of a na+-bound na+,k+-atpase in the e1 state with atp-gamma-s (Complex from Homo sapiens)
- Sodium/potassium-transporting atpase subunit alpha-1 (113 kDa, Protein from Homo sapiens)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Cholesterol hemisuccinate (486 Da, Ligand)
- Sodium ion (22 Da, Ligand)