Band 3-Glycophorin A complex, outward facing
Resolution: 2.35 Å
EM Method: Single-particle
Fitted PDBs: 7uz3
Q-score: 0.701
Vallese F, Kim K, Yen LY, Johnston JD, Noble AJ, Cali T, Clarke OB
Nat Struct Mol Biol (2022) 29 pp. 706-718 [ DOI: doi:10.1038/s41594-022-00792-w Pubmed: 35835865 ]
- [(2r)-2-octanoyloxy-3-[oxidanyl-[(1r,2r,3s,4r,5r,6s)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate (746 Da, Ligand)
- Water (18 Da, Ligand)
- Band 3 anion exchanger complexed with glycophorin a, in outward facing state. (Complex from Homo sapiens)
- Glycophorin-a (16 kDa, Protein from Homo sapiens)
- Diundecyl phosphatidyl choline (622 Da, Ligand)
- Band 3 anion transport protein (101 kDa, Protein from Homo sapiens)
- Cholesterol (386 Da, Ligand)
Erythrocyte ankyrin-1 complex class 2 local refinement of AQP1 (C4 symmetry applied)
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 7uze
Q-score: 0.701
Vallese F, Kim K, Yen LY, Johnston JD, Noble AJ, Cali T, Clarke OB
Nat Struct Mol Biol (2022) 29 pp. 706-718 [ DOI: doi:10.1038/s41594-022-00792-w Pubmed: 35835865 ]
- Aquaporin-1 (28 kDa, Protein from human)
- Cholesterol (386 Da, Ligand)
- Water (18 Da, Ligand)
- Local refinement of aquaporin 1 in class 2 of ankyrin complex; local c4 symmetry applied. (Complex from Homo sapiens)
Local refinement of RhAG-RhCE-ANK1(AR1-5), from consensus refinement of all classes
Resolution: 2.17 Å
EM Method: Single-particle
Fitted PDBs: 7uzq
Q-score: 0.749
Vallese F, Kim K, Yen LY, Johnston JD, Noble AJ, Cali T, Clarke OB
Nat Struct Mol Biol (2022) 29 pp. 706-718 [ DOI: doi:10.1038/s41594-022-00792-w Pubmed: 35835865 ]
- Ankyrin-1 (21 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
- Ankyrin complex mixture purified from digitonin-solubilized erythrocyte ghost membranes (Complex from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- Ammonium transporter rh type a (44 kDa, Protein from Homo sapiens)
- Blood group rh(ce) polypeptide (45 kDa, Protein from Homo sapiens)
- Digitonin (1 kDa, Ligand)
Band 3-I-TM local refinement from erythrocyte ankyrin-1 complex consensus reconstruction
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7v07
Q-score: 0.604
Vallese F, Kim K, Yen LY, Johnston JD, Noble AJ, Cali T, Clarke OB
Nat Struct Mol Biol (2022) 29 pp. 706-718 [ DOI: doi:10.1038/s41594-022-00792-w Pubmed: 35835865 ]
- [(2r)-2-octanoyloxy-3-[oxidanyl-[(1r,2r,3s,4r,5r,6s)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate (746 Da, Ligand)
- Ankyrin complex mixture purified from digitonin-solubilized erythrocyte ghost membranes (Complex from Homo sapiens)
- Glycophorin-a (16 kDa, Protein from Homo sapiens)
- Diundecyl phosphatidyl choline (622 Da, Ligand)
- Band 3 anion transport protein (101 kDa, Protein from Homo sapiens)
- Cholesterol (386 Da, Ligand)
Consensus refinement of human erythrocyte ankyrin-1 complex (Composite map)
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 7v0k
Q-score: 0.703
Vallese F, Kim K, Yen LY, Johnston JD, Noble AJ, Cali T, Clarke OB
Nat Struct Mol Biol (2022) 29 pp. 706-718 [ DOI: doi:10.1038/s41594-022-00792-w Pubmed: 35835865 ]
- [(2r)-2-octanoyloxy-3-[oxidanyl-[(1r,2r,3s,4r,5r,6s)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate (746 Da, Ligand)
- Water (18 Da, Ligand)
- Glycophorin-a (16 kDa, Protein from Homo sapiens)
- Protein 4.2 (77 kDa, Protein from Homo sapiens)
- Ankyrin-1 (206 kDa, Protein from Homo sapiens)
- Band 3 anion exchanger complexed with glycophorin a, in outward facing state (Complex from Homo sapiens)
- Diundecyl phosphatidyl choline (622 Da, Ligand)
- Band 3 anion transport protein (101 kDa, Protein from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Ammonium transporter rh type a (44 kDa, Protein from Homo sapiens)
- Blood group rh(ce) polypeptide (45 kDa, Protein from Homo sapiens)
- Digitonin (1 kDa, Ligand)
Local refinement of RhAG/CE trimer, class 1 of erythrocyte ankyrin-1 complex
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 7v0s
Q-score: 0.694
Vallese F, Kim K, Yen LY, Johnston JD, Noble AJ, Cali T, Clarke OB
Nat Struct Mol Biol (2022) 29 pp. 706-718 [ DOI: doi:10.1038/s41594-022-00792-w Pubmed: 35835865 ]
- Water (18 Da, Ligand)
- Ankyrin-1 (206 kDa, Protein from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- Erythrocyte ankyrin-1 complex (Complex from Homo sapiens)
- Ammonium transporter rh type a (44 kDa, Protein from Homo sapiens)
- Blood group rh(ce) polypeptide (45 kDa, Protein from Homo sapiens)
- Digitonin (1 kDa, Ligand)
Local refinement of Band 3-II transmembrane domains, class 1 of erythrocyte ankyrin-1 complex
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7v19
Q-score: 0.484
Vallese F, Kim K, Yen LY, Johnston JD, Noble AJ, Cali T, Clarke OB
Nat Struct Mol Biol (2022) 29 pp. 706-718 [ DOI: doi:10.1038/s41594-022-00792-w Pubmed: 35835865 ]
- [(2r)-2-octanoyloxy-3-[oxidanyl-[(1r,2r,3s,4r,5r,6s)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate (746 Da, Ligand)
- Glycophorin-a (16 kDa, Protein from Homo sapiens)
- Band 3 anion transport protein (101 kDa, Protein from Homo sapiens)
- Erythrocyte ankyrin-1 complex (Complex from Homo sapiens)
- Cholesterol (386 Da, Ligand)
Local refinement of Band 3-I transmembrane domains, class 1 of erythrocyte ankyrin-1 complex
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8crq
Q-score: 0.52
Vallese F, Kim K, Yen LY, Johnston JD, Noble AJ, Cali T, Clarke OB
Nat Struct Mol Biol (2022) 29 pp. 706-718 [ DOI: doi:10.1038/s41594-022-00792-w Pubmed: 35835865 ]
- [(2r)-2-octanoyloxy-3-[oxidanyl-[(1r,2r,3s,4r,5r,6s)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate (746 Da, Ligand)
- Glycophorin-a (16 kDa, Protein from Homo sapiens)
- Band 3 anion transport protein (101 kDa, Protein from Homo sapiens)
- Erythrocyte ankyrin-1 complex (Complex from Homo sapiens)
- Cholesterol (386 Da, Ligand)
Local refinement of Band 3-III transmembrane domains, class 1 of erythrocyte ankyrin-1 complex
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8crr
Q-score: 0.574
Vallese F, Kim K, Yen LY, Johnston JD, Noble AJ, Cali T, Clarke OB
Nat Struct Mol Biol (2022) 29 pp. 706-718 [ DOI: doi:10.1038/s41594-022-00792-w Pubmed: 35835865 ]
- [(2r)-2-octanoyloxy-3-[oxidanyl-[(1r,2r,3s,4r,5r,6s)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate (746 Da, Ligand)
- Glycophorin-a (16 kDa, Protein from Homo sapiens)
- Band 3 anion transport protein (101 kDa, Protein from Homo sapiens)
- Erythrocyte ankyrin-1 complex (Complex from Homo sapiens)
- Cholesterol (386 Da, Ligand)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8crt
Q-score: 0.401
Vallese F, Kim K, Yen LY, Johnston JD, Noble AJ, Cali T, Clarke OB
Nat Struct Mol Biol (2022) 29 pp. 706-718 [ DOI: doi:10.1038/s41594-022-00792-w Pubmed: 35835865 ]
- Glycophorin-a (16 kDa, Protein from Homo sapiens)
- Band 3 anion transport protein (101 kDa, Protein from Homo sapiens)
- Erythrocyte ankyrin-1 complex (Complex from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- Ammonium transporter rh type a (44 kDa, Protein from Homo sapiens)
- Blood group rh(ce) polypeptide (45 kDa, Protein from Homo sapiens)
- Glycophorin-b (9 kDa, Protein from Homo sapiens)