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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"COMPASS"

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EMD-21157

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Yeast COMPASS in complex with a ubiquitinated nucleosome

Release date: Jan. 15, 2020
Resolution: 3.37 Å
EM Method: Single-particle
Fitted PDBs: 6ven
Q-score: 0.449

Worden EJ, Zhang X, Wolberger C

eLife (2020) 9 [ Pubmed: 31922488 DOI: doi:10.7554/eLife.53199 ]

Sample:

Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
Yeast compass (Complex from Saccharomyces cerevisiae)
Compass component swd1 (48 kDa, Protein from Saccharomyces cerevisiae)
Compass component sdc1 (19 kDa, Protein from Saccharomyces cerevisiae)
Complex between yeast compass and a ubiquitinated nucleosome (Complex)
Histone h3.2 (15 kDa, Protein from Xenopus laevis)
S-adenosylmethionine (398 Da, Ligand)
Ubiquitinated nucleosome (Complex from Xenopus laevis)
Zinc ion (65 Da, Ligand)
Histone h2a type 1 (13 kDa, Protein from Xenopus laevis)
Ubiquitin (9 kDa, Protein from Homo sapiens)
Histone h4 (11 kDa, Protein from Xenopus laevis)
601 dna (146-mer) (45 kDa, DNA from synthetic construct)
601 dna (146-mer) (44 kDa, DNA from synthetic construct)
Histone-lysine n-methyltransferase, h3 lysine-4 specific (41 kDa, Protein from Saccharomyces cerevisiae)
Compass component spp1 (45 kDa, Protein from Saccharomyces cerevisiae)
Compass component bre2 (58 kDa, Protein from Saccharomyces cerevisiae)
Compass component swd3 (34 kDa, Protein from Saccharomyces cerevisiae)

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EMD-20765

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Structural basis of COMPASS eCM recognition of an unmodified nucleosome

Release date: Nov. 20, 2019
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6ugm
Q-score: 0.385

Hsu PL, Shi H, Leonen C, Kang J, Chatterjee C, Zheng N

Mol Cell (2019) 76 pp. 712- [ Pubmed: 31733991 DOI: doi:10.1016/j.molcel.2019.10.013 ]

Sample:

Swd1 (49 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
Histone h2b (13 kDa, Protein from Xenopus laevis)
Compass ecm (Complex from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Nucleosome (Complex from Xenopus laevis)
H3 n-terminus (378 Da, Protein from Xenopus laevis)
Histone h2a (11 kDa, Protein from Xenopus laevis)
Bre2 (47 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Yeast compass ecm bound to an unmodified nucleosome (450 kDa, Complex)
Swd3 (36 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
S-adenosylmethionine (398 Da, Ligand)
Histone-lysine n-methyltransferase, h3 lysine-4 specific (31 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Dna (146-mer) (45 kDa, DNA from synthetic construct)
Histone h4 (11 kDa, Protein from Xenopus laevis)
Zinc ion (65 Da, Ligand)
Sdc1 (14 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Dna (146-mer) (45 kDa, DNA from synthetic construct)
Spp1 (39 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Histone h3 (15 kDa, Protein from Xenopus laevis)

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EMD-20767

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Structural basis of COMPASS eCM recognition of the H2Bub nucleosome

Release date: Nov. 20, 2019
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6uh5
Q-score: 0.372

Hsu PL, Shi H, Leonen C, Kang J, Chatterjee C, Zheng N

Mol Cell (2019) 76 pp. 712- [ Pubmed: 31733991 DOI: doi:10.1016/j.molcel.2019.10.013 ]

Sample:

Swd1 (49 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Histone h2b (13 kDa, Protein from Xenopus laevis)
Histone h2b (13 kDa, Protein from Xenopus laevis)
Compass ecm (Complex from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Nucleosome (Complex from Xenopus laevis)
Ubiquitin (Complex from Homo sapiens)
Histone h2a (11 kDa, Protein from Xenopus laevis)
Bre2 (47 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Swd3 (36 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
S-adenosylmethionine (398 Da, Ligand)
Histone-lysine n-methyltransferase, h3 lysine-4 specific (31 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Dna (146-mer) (45 kDa, DNA from synthetic construct)
H3 n-terminus (936 Da, Protein from Xenopus laevis)
Histone h4 (11 kDa, Protein from Xenopus laevis)
Dna (146-mer) (44 kDa, DNA from synthetic construct)
Zinc ion (65 Da, Ligand)
Sdc1 (14 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Ubiquitin (8 kDa, Protein from Homo sapiens)
Spp1 (39 kDa, Protein from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
Structural basis of compass ecm recognition of the h2bub nucleosome (450 kDa, Complex)
Histone h3 (15 kDa, Protein from Xenopus laevis)

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EMD-9694

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The complete structure of yeast COMPASS

Release date: Dec. 12, 2018
Resolution: 10.0 Å
EM Method: Single-particle

Wang Y, Ding Z, Liu X, Bao Y, Huang M, Wong CCL, Hong X, Cong Y

Sci Rep (2018) 8 pp. 17405-17405 [ DOI: doi:10.1038/s41598-018-35609-8 Pubmed: 30479350 ]

Sample:

Compass (Complex from Saccharomyces cerevisiae)

EMD-7303

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Structure of histone H3k4 methyltransferase

Release date: Sept. 5, 2018
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 6bx3
Q-score: 0.297

Qu Q, Takahashi YH, Yang Y, Hu H, Zhang Y, Brunzelle JS, Couture JF, Shilatifard A, Skiniotis G

Cell (2018) 174 pp. 1117-1126.e12 [ DOI: doi:10.1016/j.cell.2018.07.020 Pubmed: 30100186 ]

Sample:

Histone-lysine n-methyltransferase, h3 lysine-4 specific (32 kDa, Protein from Saccharomyces cerevisiae (strain YJM789))
Compass component spp1 (28 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Compass component swd3 (34 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Compass component swd1 (47 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Compass component bre2 (48 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Compass component sdc1 (4 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Multi-component complex of set1 with its core subunits cps25, cps30, cps40, cps50 and cps60 (220 kDa, Complex from Saccharomyces cerevisiae)

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Sort by: Download

Showing 1 - 5 of 5. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [5]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

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