penton capsomer of the VZV C-capsid
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 8xa0
Q-score: 0.195
Cao L, Wang N, Lv Z, Chen W, Chen Z, Song L, Sha X, Wang G, Hu Y, Lian X, Cui G, Fan J, Quan Y, Liu H, Hou H, Wang X
Hlife (2024) 2 pp. 64-74 [ DOI: doi:10.1016/j.hlife.2023.10.007 ]
- Capsid vertex component 1 (73 kDa, Protein from Human alphaherpesvirus 3)
- Large tegument protein deneddylase (5 kDa, Protein from Human alphaherpesvirus 3)
- Tri1 (32 kDa, Protein from Human alphaherpesvirus 3)
- Human alphaherpesvirus 3 (Virus from Human alphaherpesvirus 3)
- Capsid vertex component 2 (10 kDa, Protein from Human alphaherpesvirus 3)
- Tri2b (28 kDa, Protein from Human alphaherpesvirus 3)
- Tri2a (27 kDa, Protein from Human alphaherpesvirus 3)
- Major capsid protein (152 kDa, Protein from Human alphaherpesvirus 3)
Human cytomegalovirus portal vertex, virion configuration 1 (VC1)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8tep
Q-score: 0.374
Sci Adv (2024) 10 pp. eadj1640-eadj1640 [ DOI: doi:10.1126/sciadv.adj1640 Pubmed: 38394211 ]
- Capsid vertex component 1 (68 kDa, Protein from Human herpesvirus 5 strain AD169)
- Capsid vertex component 2 (71 kDa, Protein from Human herpesvirus 5 strain AD169)
- Major capsid protein (154 kDa, Protein from Human herpesvirus 5 strain AD169)
- Triplex capsid protein 1 (33 kDa, Protein from Human herpesvirus 5 strain AD169)
- Large structural phosphoprotein (112 kDa, Protein from Human herpesvirus 5 strain AD169)
- Triplex capsid protein 2 (34 kDa, Protein from Human herpesvirus 5 strain AD169)
- Large tegument protein deneddylase (253 kDa, Protein from Human herpesvirus 5 strain AD169)
- Inner tegument protein (110 kDa, Protein from Human herpesvirus 5 strain AD169)
- Small capsomere-interacting protein (8 kDa, Protein from Human herpesvirus 5 strain AD169)
- Human herpesvirus 5 strain ad169 (Virus from Human herpesvirus 5 strain AD169)
Human cytomegalovirus portal vertex, virion configuration 2 (VC2)
Resolution: 3.27 Å
EM Method: Single-particle
Fitted PDBs: 8tes
Q-score: 0.567
Sci Adv (2024) 10 pp. eadj1640-eadj1640 [ DOI: doi:10.1126/sciadv.adj1640 Pubmed: 38394211 ]
- Triplex capsid protein 2 (34 kDa, Protein from Human herpesvirus 5 strain AD169)
- Capsid vertex component 2 (71 kDa, Protein from Human herpesvirus 5 strain AD169)
- Large tegument protein deneddylase (253 kDa, Protein from Human herpesvirus 5 strain AD169)
- Large structural phosphoprotein (112 kDa, Protein from Human herpesvirus 5 strain AD169)
- Capsid vertex component 1 (68 kDa, Protein from Human herpesvirus 5 strain AD169)
- Small capsomere-interacting protein (8 kDa, Protein from Human herpesvirus 5 strain AD169)
- Triplex capsid protein 1 (33 kDa, Protein from Human herpesvirus 5 strain AD169)
- Human herpesvirus 5 strain ad169 (Virus from Human herpesvirus 5 strain AD169)
- Major capsid protein (154 kDa, Protein from Human herpesvirus 5 strain AD169)
Human cytomegalovirus portal vertex, non-infectious enveloped particle (NIEP) configuration 1 (NC1)
Resolution: 4.26 Å
EM Method: Single-particle
Fitted PDBs: 8tet
Q-score: 0.461
Sci Adv (2024) 10 pp. eadj1640-eadj1640 [ DOI: doi:10.1126/sciadv.adj1640 Pubmed: 38394211 ]
- Triplex capsid protein 2 (34 kDa, Protein from Human herpesvirus 5 strain AD169)
- Capsid vertex component 2 (71 kDa, Protein from Human herpesvirus 5 strain AD169)
- Large tegument protein deneddylase (253 kDa, Protein from Human herpesvirus 5 strain AD169)
- Large structural phosphoprotein (112 kDa, Protein from Human herpesvirus 5 strain AD169)
- Capsid vertex component 1 (68 kDa, Protein from Human herpesvirus 5 strain AD169)
- Small capsomere-interacting protein (8 kDa, Protein from Human herpesvirus 5 strain AD169)
- Triplex capsid protein 1 (33 kDa, Protein from Human herpesvirus 5 strain AD169)
- Human herpesvirus 5 strain ad169 (Virus from Human herpesvirus 5 strain AD169)
- Major capsid protein (154 kDa, Protein from Human herpesvirus 5 strain AD169)
Resolution: 4.01 Å
EM Method: Single-particle
Fitted PDBs: 8teu
Q-score: 0.43
Sci Adv (2024) 10 pp. eadj1640-eadj1640 [ DOI: doi:10.1126/sciadv.adj1640 Pubmed: 38394211 ]
- Triplex capsid protein 2 (34 kDa, Protein from Human herpesvirus 5 strain AD169)
- Capsid vertex component 2 (71 kDa, Protein from Human herpesvirus 5 strain AD169)
- Large tegument protein deneddylase (253 kDa, Protein from Human herpesvirus 5 strain AD169)
- Large structural phosphoprotein (112 kDa, Protein from Human herpesvirus 5 strain AD169)
- Capsid vertex component 1 (68 kDa, Protein from Human herpesvirus 5 strain AD169)
- Small capsomere-interacting protein (8 kDa, Protein from Human herpesvirus 5 strain AD169)
- Triplex capsid protein 1 (33 kDa, Protein from Human herpesvirus 5 strain AD169)
- Human herpesvirus 5 strain ad169 (Virus from Human herpesvirus 5 strain AD169)
- Major capsid protein (154 kDa, Protein from Human herpesvirus 5 strain AD169)
Human cytomegalovirus penton vertex, CVSC-bound configuration
Resolution: 3.02 Å
EM Method: Single-particle
Fitted PDBs: 8tew
Q-score: 0.544
Sci Adv (2024) 10 pp. eadj1640-eadj1640 [ DOI: doi:10.1126/sciadv.adj1640 Pubmed: 38394211 ]
- Triplex capsid protein 2 (34 kDa, Protein from Human herpesvirus 5 strain AD169)
- Capsid vertex component 2 (71 kDa, Protein from Human herpesvirus 5 strain AD169)
- Large tegument protein deneddylase (253 kDa, Protein from Human herpesvirus 5 strain AD169)
- Capsid vertex component 1 (68 kDa, Protein from Human herpesvirus 5 strain AD169)
- Small capsomere-interacting protein (8 kDa, Protein from Human herpesvirus 5 strain AD169)
- Triplex capsid protein 1 (33 kDa, Protein from Human herpesvirus 5 strain AD169)
- Large structural phosphoprotein (112 kDa, Protein from Human herpesvirus 5 strain AD169)
- Human herpesvirus 5 strain ad169 (Virus from Human herpesvirus 5 strain AD169)
- Major capsid protein (154 kDa, Protein from Human herpesvirus 5 strain AD169)
C5 portal vertex in HCMV B-capsid
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 8hex
Q-score: 0.283
Li Z, Pang J, Gao R, Wang Q, Zhang M, Yu X
Nat Commun (2023) 14 pp. 2025-2025 [ DOI: doi:10.1038/s41467-023-37779-0 Pubmed: 37041152 ]
- Portal protein (3 kDa, Protein from Human betaherpesvirus 5)
- Human betaherpesvirus 5 (Virus from Human betaherpesvirus 5)
- Major capsid protein (154 kDa, Protein from Human betaherpesvirus 5)
- Capsid vertex component 1 (68 kDa, Protein from Human betaherpesvirus 5)
- Small capsomere-interacting protein (8 kDa, Protein from Human betaherpesvirus 5)
- Capsid vertex component 2 (71 kDa, Protein from Human betaherpesvirus 5)
- Portal protein (1 kDa, Protein from Human betaherpesvirus 5)
- Triplex capsid protein 1 (33 kDa, Protein from Human betaherpesvirus 5)
- Portal protein (1 kDa, Protein from Human betaherpesvirus 5)
- Triplex capsid protein 2 (34 kDa, Protein from Human betaherpesvirus 5)
One CVSC-binding penton vertex in HCMV B-capsid
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 8hey
Q-score: 0.392
Li Z, Pang J, Gao R, Wang Q, Zhang M, Yu X
Nat Commun (2023) 14 pp. 2025-2025 [ DOI: doi:10.1038/s41467-023-37779-0 Pubmed: 37041152 ]
- Human betaherpesvirus 5 (Virus from Human betaherpesvirus 5)
- Major capsid protein (154 kDa, Protein from Human betaherpesvirus 5)
- Capsid vertex component 1 (68 kDa, Protein from Human betaherpesvirus 5)
- Small capsomere-interacting protein (8 kDa, Protein from Human betaherpesvirus 5)
- Capsid vertex component 2 (71 kDa, Protein from Human betaherpesvirus 5)
- Triplex capsid protein 1 (33 kDa, Protein from Human betaherpesvirus 5)
- Triplex capsid protein 2 (34 kDa, Protein from Human betaherpesvirus 5)
C5 portal vertex in the enveloped virion capsid
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7et3
Q-score: 0.398
Nat Commun (2021) 12 pp. 4538-4538 [ DOI: doi:10.1038/s41467-021-24820-3 Pubmed: 34315863 ]
- Capsid vertex component 1 (68 kDa, Protein from Human cytomegalovirus)
- Large tegument protein deneddylase (253 kDa, Protein from Human cytomegalovirus)
- Human betaherpesvirus 5 (Virus from Human betaherpesvirus 5)
- Triplex capsid protein 1 (33 kDa, Protein from Human cytomegalovirus)
- Small capsomere-interacting protein (8 kDa, Protein from Human cytomegalovirus)
- Orfl92c_ul32 (112 kDa, Protein from Human cytomegalovirus)
- Triplex capsid protein 2 (34 kDa, Protein from Human cytomegalovirus)
- Major capsid protein (154 kDa, Protein from Human cytomegalovirus)
- Capsid vertex component 2 (71 kDa, Protein from Human cytomegalovirus)
C5 portal vertex in the partially-enveloped virion capsid
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7etj
Q-score: 0.406
Nat Commun (2021) 12 pp. 4538-4538 [ DOI: doi:10.1038/s41467-021-24820-3 Pubmed: 34315863 ]
- Capsid vertex component 1 (68 kDa, Protein from Human cytomegalovirus)
- Large tegument protein deneddylase (253 kDa, Protein from Human cytomegalovirus)
- Human betaherpesvirus 5 (Virus from Human betaherpesvirus 5)
- Triplex capsid protein 1 (33 kDa, Protein from Human cytomegalovirus)
- Small capsomere-interacting protein (8 kDa, Protein from Human cytomegalovirus)
- Orfl92c_ul32 (112 kDa, Protein from Human cytomegalovirus)
- Triplex capsid protein 2 (34 kDa, Protein from Human cytomegalovirus)
- Major capsid protein (154 kDa, Protein from Human cytomegalovirus)
- Capsid vertex component 2 (71 kDa, Protein from Human cytomegalovirus)