CRISPR-Cas type III-D effector complex
Resolution: 2.52 Å
EM Method: Single-particle
Fitted PDBs: 8s9t
Q-score: 0.623
Schwartz EA, Bravo JPK, Ahsan M, Macias LA, McCafferty CL, Dangerfield TL, Walker JN, Brodbelt JS, Palermo G, Fineran PC, Fagerlund RD, Taylor DW
Nat Commun (2024) 15 pp. 3324-3324 [ DOI: doi:10.1038/s41467-024-47506-y Pubmed: 38637512 ]
- Crispr-cas type iii-d effector complex (332 kDa, Complex from Synechocystis sp. PCC 6803)
- Cas10 (64 kDa, Protein from Synechocystis sp. PCC 6803)
- Cas7-cas5-cas11 (87 kDa, Protein from Synechocystis sp. PCC 6803)
- Tigr03986 family crispr-associated ramp protein (90 kDa, Protein from Synechocystis sp. PCC 6803)
- Cas7-2x (56 kDa, Protein from Synechocystis sp. PCC 6803)
- Tigr03984 family crispr-associated protein (21 kDa, Protein from Synechocystis sp. PCC 6803)
- Crispr rna (11 kDa, RNA from Synechocystis sp. PCC 6803)
CRISPR-Cas type III-D effector complex bound to a target RNA
Resolution: 2.77 Å
EM Method: Single-particle
Fitted PDBs: 8s9u
Q-score: 0.584
Schwartz EA, Bravo JPK, Ahsan F, Macias LA, Brodbelt JS, Brodbelt JS, Palermo G, Fineran PC, Fagerlund RD, Taylor DW
To Be Published
- Target rna (19 kDa, RNA from Synechocystis sp. PCC 6803)
- Cas10 (64 kDa, Protein from Synechocystis sp. PCC 6803)
- Cas7-cas5-cas11 (87 kDa, Protein from Synechocystis sp. PCC 6803)
- Tigr03986 family crispr-associated ramp protein (90 kDa, Protein from Synechocystis sp. PCC 6803)
- Crispr-cas type iii-d effector complex bound to target rna (351 kDa, Complex from Synechocystis sp. PCC 6803)
- Cas7-2x (56 kDa, Protein from Synechocystis sp. PCC 6803)
- Tigr03984 family crispr-associated protein (21 kDa, Protein from Synechocystis sp. PCC 6803)
- Crispr rna (11 kDa, RNA from Synechocystis sp. PCC 6803)
CRISPR-Cas type III-D effector complex bound to a self-target RNA in the pre-cleavage state
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8s9v
Q-score: 0.561
Schwartz EA, Bravo JPK, Ahsan M, Macias LA, McCafferty CL, Dangerfield TL, Walker JN, Brodbelt JS, Palermo G, Fineran PC, Fagerlund RD, Taylor DW
Nat Commun (2024) 15 pp. 3324-3324 [ DOI: doi:10.1038/s41467-024-47506-y Pubmed: 38637512 ]
- Crispr-cas type iii-d effector complex (332 kDa, Complex from Synechocystis sp. PCC 6803)
- Magnesium ion (24 Da, Ligand)
- Cas10 (64 kDa, Protein from Synechocystis sp. PCC 6803)
- Cas7-cas5-cas11 (87 kDa, Protein from Synechocystis sp. PCC 6803)
- Self-target rna (19 kDa, RNA from Synechocystis sp. PCC 6803)
- Tigr03986 family crispr-associated ramp protein (90 kDa, Protein from Synechocystis sp. PCC 6803)
- Cas7-2x (56 kDa, Protein from Synechocystis sp. PCC 6803)
- Tigr03984 family crispr-associated protein (21 kDa, Protein from Synechocystis sp. PCC 6803)
- Crispr rna (11 kDa, RNA from Synechocystis sp. PCC 6803)
- Water (18 Da, Ligand)
CRISPR-Cas type III-D effector complex bound to self-target RNA in a post-cleavage state
Resolution: 3.44 Å
EM Method: Single-particle
Fitted PDBs: 8s9x
Q-score: 0.456
Schwartz EA, Bravo JPK, Ahsan M, Macias LA, McCafferty CL, Dangerfield TL, Walker JN, Brodbelt JS, Palermo G, Fineran PC, Fagerlund RD, Taylor DW
Nat Commun (2024) 15 pp. 3324-3324 [ DOI: doi:10.1038/s41467-024-47506-y Pubmed: 38637512 ]
- Self-target rna (19 kDa, RNA from Synechocystis sp. PCC 6803)
- Crispr-cas type iii-d effector complex (332 kDa, Complex from Synechocystis sp. PCC 6803)
- Cas10 (64 kDa, Protein from Synechocystis sp. PCC 6803)
- Cas7-cas5-cas11 (87 kDa, Protein from Synechocystis sp. PCC 6803)
- Tigr03986 family crispr-associated ramp protein (90 kDa, Protein from Synechocystis sp. PCC 6803)
- Cas7-2x (56 kDa, Protein from Synechocystis sp. PCC 6803)
- Tigr03984 family crispr-associated protein (21 kDa, Protein from Synechocystis sp. PCC 6803)
- Crispr rna (11 kDa, RNA from Synechocystis sp. PCC 6803)
Structure of type I-D Cascade bound to a dsDNA target
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7sba
Q-score: 0.453
Schwartz EA, McBride TM, Bravo JPK, Wrapp D, Fineran PC, Fagerlund RD, Taylor DW
Nat Commun (2022) 13 pp. 2829-2829 [ DOI: doi:10.1038/s41467-022-30402-8 Pubmed: 35595728 ]
- Crrna (13 kDa, RNA from Synechocystis sp. PCC 6803)
- Cas10d (112 kDa, Protein from Synechocystis sp. PCC 6803)
- Dna non-target strand (3 kDa, DNA from synthetic construct)
- Cas7d (36 kDa, Protein from Synechocystis sp. PCC 6803)
- Cas11d (17 kDa, Protein from Synechocystis sp. PCC 6803)
- Dna target strand (4 kDa, DNA from synthetic construct)
- Type i-d cascade bound to a dsdna target (480 kDa, Complex)
- Cas5d (28 kDa, Protein from Synechocystis sp. PCC 6803)
Structure of type I-D Cascade bound to a ssRNA target
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7sbb
Q-score: 0.433
Schwartz EA, McBride TM, Bravo JPK, Wrapp D, Fineran PC, Fagerlund RD, Taylor DW
Nat Commun (2022) 13 pp. 2829-2829 [ DOI: doi:10.1038/s41467-022-30402-8 Pubmed: 35595728 ]
- Crrna (13 kDa, RNA from Synechocystis sp. PCC 6803)
- Cas10d (112 kDa, Protein from Synechocystis sp. PCC 6803)
- Ssrna target (10 kDa, RNA from synthetic construct)
- Type i-d cascade bound to a ssrna target (450 kDa, Complex)
- Cas7d (36 kDa, Protein from Synechocystis sp. PCC 6803)
- Cas11d (17 kDa, Protein from Synechocystis sp. PCC 6803)
- Cas5d (28 kDa, Protein from Synechocystis sp. PCC 6803)