Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8g9s
Q-score: 0.401
Hu C, Myers MT, Zhou X, Hou Z, Lozen ML, Nam KH, Zhang Y, Ke A
Mol Cell (2024) 84 pp. 463-475.e5 [ Pubmed: 38242128 DOI: doi:10.1016/j.molcel.2023.12.034 ]
- Rna (42-mer) (13 kDa, RNA from Neisseria lactamica)
- Acric8 (8 kDa, Protein from Rhodobacter phage RcNL1)
- Cas5 (23 kDa, Protein from Neisseria lactamica)
- Cas8 (45 kDa, Protein from Neisseria lactamica)
- Cas7 (32 kDa, Protein from Neisseria lactamica)
- Binary complex of acric8 with crrna bound type i-c cascade (400 kDa, Complex from Neisseria lactamica)
- Cas11 (14 kDa, Protein from Neisseria lactamica)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8g9t
Q-score: 0.391
Hu C, Myers MT, Zhou X, Hou Z, Lozen ML, Nam KH, Zhang Y, Ke A
Mol Cell (2024) 84 pp. 463-475.e5 [ Pubmed: 38242128 DOI: doi:10.1016/j.molcel.2023.12.034 ]
- Cas5 (23 kDa, Protein from Neisseria lactamica)
- Crrna (43-mer) (13 kDa, RNA from Neisseria lactamica)
- Binary complex of acric9 with crrna bound type i-c cascade (400 kDa, Complex from Neisseria lactamica)
- Cas7 (32 kDa, Protein from Neisseria lactamica)
- Cas11 (14 kDa, Protein from Neisseria lactamica)
- Acric9 (8 kDa, Protein from Rhodobacter phage RcNL1)
- Cas8 (64 kDa, Protein from Neisseria lactamica)
Resolution: 3.64 Å
EM Method: Single-particle
Fitted PDBs: 8gaf
Q-score: 0.159
Hu C, Myers MT, Zhou X, Hou Z, Lozen ML, Nam KH, Zhang Y, Ke A
Mol Cell (2024) 84 pp. 463-475.e5 [ Pubmed: 38242128 DOI: doi:10.1016/j.molcel.2023.12.034 ]
- Cas5 (23 kDa, Protein from Neisseria lactamica)
- Cas8 (64 kDa, Protein from Neisseria lactamica)
- Ternary complex of cas3 with dsdna bound type i-c cascade at r-loop formation (400 kDa, Complex from Neisseria lactamica)
- Crrna (43-mer) (13 kDa, RNA from Neisseria lactamica)
- Cas7 (32 kDa, Protein from Neisseria lactamica)
- Cas11 (14 kDa, Protein from Neisseria lactamica)
Resolution: 3.46 Å
EM Method: Single-particle
Fitted PDBs: 8gam
Q-score: 0.16
Hu C, Myers MT, Zhou X, Hou Z, Lozen ML, Nam KH, Zhang Y, Ke A
Mol Cell (2024) 84 pp. 463-475.e5 [ Pubmed: 38242128 DOI: doi:10.1016/j.molcel.2023.12.034 ]
- Cas5 (23 kDa, Protein from Neisseria lactamica)
- Target strand dna (25-mer) (7 kDa, DNA from Neisseria lactamica)
- Ternary complex of cas3 with dsdna bound type i-c cascade at r-loop formation (400 kDa, Complex from Neisseria lactamica)
- Crrna (43-mer) (13 kDa, RNA from Neisseria lactamica)
- Cas7 (32 kDa, Protein from Neisseria lactamica)
- Cas11 (14 kDa, Protein from Neisseria lactamica)
- Non target strand dna (5'-d(p*ap*tp*gp*ap*ap*cp*tp*tp*cp*ap*ap*ap*a)-3') (3 kDa, DNA from Neisseria lactamica)
- Phage associated protein (64 kDa, Protein from Neisseria lactamica)
Resolution: 3.26 Å
EM Method: Single-particle
Fitted PDBs: 8gan
Q-score: 0.227
Hu C, Myers MT, Zhou X, Hou Z, Lozen ML, Nam KH, Zhang Y, Ke A
Mol Cell (2024) 84 pp. 463-475.e5 [ Pubmed: 38242128 DOI: doi:10.1016/j.molcel.2023.12.034 ]
- Cas5 (23 kDa, Protein from Neisseria lactamica)
- Target strand dna (53-mer) (16 kDa, DNA from Neisseria lactamica)
- Proximal non target strand dna (5'-d(p*ap*tp*gp*ap*ap*cp*tp*tp*cp*ap*ap*ap*ap*ap*ap*ap*ap*ap*a)-3') (5 kDa, DNA from Neisseria lactamica)
- Cas8 (64 kDa, Protein from Neisseria lactamica)
- Type i-c cascade at r-loop formation (400 kDa, Complex from Neisseria lactamica)
- Crrna (43-mer) (13 kDa, RNA from Neisseria lactamica)
- Cas7 (32 kDa, Protein from Neisseria lactamica)
- Cas11 (14 kDa, Protein from Neisseria lactamica)
- Distal non target strand dna (5'-d(p*ap*tp*tp*ap*tp*ap*tp*tp*ap*ap*tp*ap*tp*tp*ap*tp*ap*tp*tp*tp*a)-3') (6 kDa, DNA from Neisseria lactamica)
Cryo-EM structure of Cascade-DNA (P23) complex in type I-B CAST system
Resolution: 2.83 Å
EM Method: Single-particle
Fitted PDBs: 8fcj
Q-score: 0.534
Wang S, Gabel C, Siddique R, Klose T, Chang L
Cell (2023) 186 pp. 4204-4215.e19 [ Pubmed: 37557170 DOI: doi:10.1016/j.cell.2023.07.010 ]
- Type i-b crispr-associated protein cas7 (37 kDa, Protein from Nostoc sp. 'Peltigera membranacea cyanobiont' 210A)
- Type i-b crispr-associated protein cas8 (63 kDa, Protein from Nostoc sp. 'Peltigera membranacea cyanobiont' 210A)
- Type i-b crispr-associated protein cas11 (16 kDa, Protein from Nostoc sp. 'Peltigera membranacea cyanobiont' 210A)
- Target dna strand (19 kDa, DNA from synthetic construct)
- Type i-b crispr-associated protein cas5 (24 kDa, Protein from Nostoc sp. 'Peltigera membranacea cyanobiont' 210A)
- Non-target dna strand (20 kDa, DNA from synthetic construct)
- Type i-b crispr-associated protein cas6 (24 kDa, Protein from Nostoc sp. 'Peltigera membranacea cyanobiont' 210A)
- Ternary complex of cascade proteins, crrna and target dna with 23 bp recognized. (Complex from Peltigera membranacea)
- Rna (22 kDa, RNA from synthetic construct)
Cryo-EM structure of Cascade-DNA-TniQ-TnsC complex in type I-B CAST system
Resolution: 3.19 Å
EM Method: Single-particle
Fitted PDBs: 8fcu
Q-score: 0.393
Wang S, Gabel C, Siddique R, Klose T, Chang L
Cell (2023) 186 pp. 4204-4215.e19 [ Pubmed: 37557170 DOI: doi:10.1016/j.cell.2023.07.010 ]
- Type i-b crispr-associated protein cas7 (37 kDa, Protein from Nostoc sp. 'Peltigera membranacea cyanobiont' 210A)
- Target dna strand (26 kDa, DNA from synthetic construct)
- Tniq (37 kDa, Protein from Nostoc sp. 'Peltigera membranacea cyanobiont' 210A)
- Non-target dna strand (26 kDa, DNA from synthetic construct)
- Type i-b crispr-associated protein cas11 (16 kDa, Protein from Nostoc sp. 'Peltigera membranacea cyanobiont' 210A)
- Magnesium ion (24 Da, Ligand)
- Tnsc (43 kDa, Protein from Nostoc sp. 'Peltigera membranacea cyanobiont' 210A)
- Type i-b crispr-associated protein cas5 (24 kDa, Protein from Nostoc sp. 'Peltigera membranacea cyanobiont' 210A)
- Type i-b crispr-associated protein cas6 (24 kDa, Protein from Nostoc sp. 'Peltigera membranacea cyanobiont' 210A)
- Type i-myxan crispr-associated cas8a1/cmx1 (63 kDa, Protein from Nostoc sp. 'Peltigera membranacea cyanobiont' 210A)
- Cascade-dna-tniq-tnsc complex (Complex from Peltigera membranacea)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Rna (22 kDa, RNA from synthetic construct)
Cryo-EM structure of Cascade complex in type I-B CAST system
Resolution: 3.65 Å
EM Method: Single-particle
Fitted PDBs: 8fd2
Q-score: 0.23
Wang S, Gabel C, Siddique R, Klose T, Chang L
Cell (2023) 186 pp. 4204-4215.e19 [ Pubmed: 37557170 DOI: doi:10.1016/j.cell.2023.07.010 ]
- Type i-b crispr-associated protein cas7 (37 kDa, Protein from Nostoc sp. 'Peltigera membranacea cyanobiont' 210A)
- Type i-b crispr-associated protein cas8 (63 kDa, Protein from Nostoc sp. 'Peltigera membranacea cyanobiont' 210A)
- Type i-b crispr-associated protein cas11 (16 kDa, Protein from Nostoc sp. 'Peltigera membranacea cyanobiont' 210A)
- Type i-b crispr-associated protein cas6 (24 kDa, Protein from Nostoc sp. 'Peltigera membranacea cyanobiont' 210A)
- A type i-b crispr-associated protein cas5 (24 kDa, Protein from Nostoc sp. 'Peltigera membranacea cyanobiont' 210A)
- Cascade complex in type i-b cast system (Complex from Peltigera membranacea)
- Rna (22 kDa, RNA from synthetic construct)
Cryo-EM structure of Cascade-PAM complex in type I-B CAST system
Resolution: 3.12 Å
EM Method: Single-particle
Fitted PDBs: 8fd3
Q-score: 0.347
Wang S, Gabel C, Siddique R, Klose T, Chang L
Cell (2023) 186 pp. 4204-4215.e19 [ Pubmed: 37557170 DOI: doi:10.1016/j.cell.2023.07.010 ]
- Type i-b crispr-associated protein cas7 (37 kDa, Protein from Nostoc sp. 'Peltigera membranacea cyanobiont' 210A)
- Target dna strand (3 kDa, DNA from synthetic construct)
- Ternary complex of cascade proteins, crrna and pam only dna (Complex from Peltigera membranacea)
- Type i-b crispr-associated protein cas11 (16 kDa, Protein from Nostoc sp. 'Peltigera membranacea cyanobiont' 210A)
- Type i-b crispr-associated protein cas5 (24 kDa, Protein from Nostoc sp. 'Peltigera membranacea cyanobiont' 210A)
- Type i-b crispr-associated protein cas6 (24 kDa, Protein from Nostoc sp. 'Peltigera membranacea cyanobiont' 210A)
- Type i-myxan crispr-associated cas8a1/cmx1 (63 kDa, Protein from Nostoc sp. 'Peltigera membranacea cyanobiont' 210A)
- Non-target dna strand (13 kDa, DNA from synthetic construct)
- Rna (22 kDa, RNA from synthetic construct)
Cryo-EM structure of Cascade-DNA-TniQ-TnsC complex (composite) in type I-B CAST system
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8ff4
Q-score: 0.417
Wang S, Gabel C, Siddique R, Klose T, Chang L
Cell (2023) 186 pp. 4204-4215.e19 [ Pubmed: 37557170 DOI: doi:10.1016/j.cell.2023.07.010 ]
- Type i-b crispr-associated protein cas7 (37 kDa, Protein from Nostoc sp. 'Peltigera membranacea cyanobiont' 210A)
- Target dna strand (26 kDa, DNA from synthetic construct)
- Type i-b crispr-associated protein cas8 (63 kDa, Protein from Nostoc sp. 'Peltigera membranacea cyanobiont' 210A)
- Tniq (37 kDa, Protein from Nostoc sp. 'Peltigera membranacea cyanobiont' 210A)
- Non-target dna strand (26 kDa, DNA from synthetic construct)
- Type i-b crispr-associated protein cas11 (16 kDa, Protein from Nostoc sp. 'Peltigera membranacea cyanobiont' 210A)
- Magnesium ion (24 Da, Ligand)
- Tnsc (43 kDa, Protein from Nostoc sp. 'Peltigera membranacea cyanobiont' 210A)
- Type i-b crispr-associated protein cas5 (24 kDa, Protein from Nostoc sp. 'Peltigera membranacea cyanobiont' 210A)
- Type i-b crispr-associated protein cas6 (24 kDa, Protein from Nostoc sp. 'Peltigera membranacea cyanobiont' 210A)
- Structure of cascade-dna-tniq-tnsc complex (composite) in type i-b cast system (Complex from Peltigera membranacea)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Rna (22 kDa, RNA from synthetic construct)