CRISPR-Cas type III-D effector complex
Resolution: 2.52 Å
EM Method: Single-particle
Fitted PDBs: 8s9t
Q-score: 0.623
Schwartz EA, Bravo JPK, Ahsan M, Macias LA, McCafferty CL, Dangerfield TL, Walker JN, Brodbelt JS, Palermo G, Fineran PC, Fagerlund RD, Taylor DW
Nat Commun (2024) 15 pp. 3324-3324 [ DOI: doi:10.1038/s41467-024-47506-y Pubmed: 38637512 ]
- Cas7-2x (56 kDa, Protein from Synechocystis sp. PCC 6803)
- Crispr rna (11 kDa, RNA from Synechocystis sp. PCC 6803)
- Tigr03986 family crispr-associated ramp protein (90 kDa, Protein from Synechocystis sp. PCC 6803)
- Crispr-cas type iii-d effector complex (332 kDa, Complex from Synechocystis sp. PCC 6803)
- Tigr03984 family crispr-associated protein (21 kDa, Protein from Synechocystis sp. PCC 6803)
- Cas10 (64 kDa, Protein from Synechocystis sp. PCC 6803)
- Cas7-cas5-cas11 (87 kDa, Protein from Synechocystis sp. PCC 6803)
CRISPR-Cas type III-D effector complex bound to a target RNA
Resolution: 2.77 Å
EM Method: Single-particle
Fitted PDBs: 8s9u
Q-score: 0.584
Schwartz EA, Bravo JPK, Ahsan F, Macias LA, Brodbelt JS, Brodbelt JS, Palermo G, Fineran PC, Fagerlund RD, Taylor DW
To Be Published
- Crispr-cas type iii-d effector complex bound to target rna (351 kDa, Complex from Synechocystis sp. PCC 6803)
- Cas7-2x (56 kDa, Protein from Synechocystis sp. PCC 6803)
- Crispr rna (11 kDa, RNA from Synechocystis sp. PCC 6803)
- Tigr03986 family crispr-associated ramp protein (90 kDa, Protein from Synechocystis sp. PCC 6803)
- Tigr03984 family crispr-associated protein (21 kDa, Protein from Synechocystis sp. PCC 6803)
- Cas10 (64 kDa, Protein from Synechocystis sp. PCC 6803)
- Cas7-cas5-cas11 (87 kDa, Protein from Synechocystis sp. PCC 6803)
- Target rna (19 kDa, RNA from Synechocystis sp. PCC 6803)
CRISPR-Cas type III-D effector complex bound to a self-target RNA in the pre-cleavage state
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8s9v
Q-score: 0.561
Schwartz EA, Bravo JPK, Ahsan M, Macias LA, McCafferty CL, Dangerfield TL, Walker JN, Brodbelt JS, Palermo G, Fineran PC, Fagerlund RD, Taylor DW
Nat Commun (2024) 15 pp. 3324-3324 [ DOI: doi:10.1038/s41467-024-47506-y Pubmed: 38637512 ]
- Magnesium ion (24 Da, Ligand)
- Cas7-2x (56 kDa, Protein from Synechocystis sp. PCC 6803)
- Water (18 Da, Ligand)
- Crispr rna (11 kDa, RNA from Synechocystis sp. PCC 6803)
- Tigr03986 family crispr-associated ramp protein (90 kDa, Protein from Synechocystis sp. PCC 6803)
- Crispr-cas type iii-d effector complex (332 kDa, Complex from Synechocystis sp. PCC 6803)
- Tigr03984 family crispr-associated protein (21 kDa, Protein from Synechocystis sp. PCC 6803)
- Cas10 (64 kDa, Protein from Synechocystis sp. PCC 6803)
- Self-target rna (19 kDa, RNA from Synechocystis sp. PCC 6803)
- Cas7-cas5-cas11 (87 kDa, Protein from Synechocystis sp. PCC 6803)
CRISPR-Cas type III-D effector complex bound to self-target RNA in a post-cleavage state
Resolution: 3.44 Å
EM Method: Single-particle
Fitted PDBs: 8s9x
Q-score: 0.456
Schwartz EA, Bravo JPK, Ahsan M, Macias LA, McCafferty CL, Dangerfield TL, Walker JN, Brodbelt JS, Palermo G, Fineran PC, Fagerlund RD, Taylor DW
Nat Commun (2024) 15 pp. 3324-3324 [ DOI: doi:10.1038/s41467-024-47506-y Pubmed: 38637512 ]
- Cas7-2x (56 kDa, Protein from Synechocystis sp. PCC 6803)
- Crispr rna (11 kDa, RNA from Synechocystis sp. PCC 6803)
- Tigr03986 family crispr-associated ramp protein (90 kDa, Protein from Synechocystis sp. PCC 6803)
- Crispr-cas type iii-d effector complex (332 kDa, Complex from Synechocystis sp. PCC 6803)
- Tigr03984 family crispr-associated protein (21 kDa, Protein from Synechocystis sp. PCC 6803)
- Cas10 (64 kDa, Protein from Synechocystis sp. PCC 6803)
- Cas7-cas5-cas11 (87 kDa, Protein from Synechocystis sp. PCC 6803)
- Self-target rna (19 kDa, RNA from Synechocystis sp. PCC 6803)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8g9s
Q-score: 0.401
Hu C, Myers MT, Zhou X, Hou Z, Lozen ML, Nam KH, Zhang Y, Ke A
Mol Cell (2024) 84 pp. 463-475.e5 [ DOI: doi:10.1016/j.molcel.2023.12.034 Pubmed: 38242128 ]
- Acric8 (8 kDa, Protein from Rhodobacter phage RcNL1)
- Cas11 (14 kDa, Protein from Neisseria lactamica)
- Cas7 (32 kDa, Protein from Neisseria lactamica)
- Cas8 (45 kDa, Protein from Neisseria lactamica)
- Rna (42-mer) (13 kDa, RNA from Neisseria lactamica)
- Binary complex of acric8 with crrna bound type i-c cascade (400 kDa, Complex from Neisseria lactamica)
- Cas5 (23 kDa, Protein from Neisseria lactamica)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8g9t
Q-score: 0.391
Hu C, Myers MT, Zhou X, Hou Z, Lozen ML, Nam KH, Zhang Y, Ke A
Mol Cell (2024) 84 pp. 463-475.e5 [ DOI: doi:10.1016/j.molcel.2023.12.034 Pubmed: 38242128 ]
- Binary complex of acric9 with crrna bound type i-c cascade (400 kDa, Complex from Neisseria lactamica)
- Cas11 (14 kDa, Protein from Neisseria lactamica)
- Cas8 (64 kDa, Protein from Neisseria lactamica)
- Cas7 (32 kDa, Protein from Neisseria lactamica)
- Crrna (43-mer) (13 kDa, RNA from Neisseria lactamica)
- Acric9 (8 kDa, Protein from Rhodobacter phage RcNL1)
- Cas5 (23 kDa, Protein from Neisseria lactamica)
Resolution: 3.64 Å
EM Method: Single-particle
Fitted PDBs: 8gaf
Q-score: 0.159
Hu C, Myers MT, Zhou X, Hou Z, Lozen ML, Nam KH, Zhang Y, Ke A
Mol Cell (2024) 84 pp. 463-475.e5 [ DOI: doi:10.1016/j.molcel.2023.12.034 Pubmed: 38242128 ]
- Crrna (43-mer) (13 kDa, RNA from Neisseria lactamica)
- Cas11 (14 kDa, Protein from Neisseria lactamica)
- Cas7 (32 kDa, Protein from Neisseria lactamica)
- Ternary complex of cas3 with dsdna bound type i-c cascade at r-loop formation (400 kDa, Complex from Neisseria lactamica)
- Cas5 (23 kDa, Protein from Neisseria lactamica)
- Cas8 (64 kDa, Protein from Neisseria lactamica)
Resolution: 3.46 Å
EM Method: Single-particle
Fitted PDBs: 8gam
Q-score: 0.16
Hu C, Myers MT, Zhou X, Hou Z, Lozen ML, Nam KH, Zhang Y, Ke A
Mol Cell (2024) 84 pp. 463-475.e5 [ DOI: doi:10.1016/j.molcel.2023.12.034 Pubmed: 38242128 ]
- Crrna (43-mer) (13 kDa, RNA from Neisseria lactamica)
- Cas11 (14 kDa, Protein from Neisseria lactamica)
- Target strand dna (25-mer) (7 kDa, DNA from Neisseria lactamica)
- Cas7 (32 kDa, Protein from Neisseria lactamica)
- Non target strand dna (5'-d(p*ap*tp*gp*ap*ap*cp*tp*tp*cp*ap*ap*ap*a)-3') (3 kDa, DNA from Neisseria lactamica)
- Ternary complex of cas3 with dsdna bound type i-c cascade at r-loop formation (400 kDa, Complex from Neisseria lactamica)
- Cas5 (23 kDa, Protein from Neisseria lactamica)
- Phage associated protein (64 kDa, Protein from Neisseria lactamica)
Resolution: 3.26 Å
EM Method: Single-particle
Fitted PDBs: 8gan
Q-score: 0.227
Hu C, Myers MT, Zhou X, Hou Z, Lozen ML, Nam KH, Zhang Y, Ke A
Mol Cell (2024) 84 pp. 463-475.e5 [ DOI: doi:10.1016/j.molcel.2023.12.034 Pubmed: 38242128 ]
- Crrna (43-mer) (13 kDa, RNA from Neisseria lactamica)
- Cas8 (64 kDa, Protein from Neisseria lactamica)
- Cas11 (14 kDa, Protein from Neisseria lactamica)
- Cas7 (32 kDa, Protein from Neisseria lactamica)
- Proximal non target strand dna (5'-d(p*ap*tp*gp*ap*ap*cp*tp*tp*cp*ap*ap*ap*ap*ap*ap*ap*ap*ap*a)-3') (5 kDa, DNA from Neisseria lactamica)
- Target strand dna (53-mer) (16 kDa, DNA from Neisseria lactamica)
- Cas5 (23 kDa, Protein from Neisseria lactamica)
- Type i-c cascade at r-loop formation (400 kDa, Complex from Neisseria lactamica)
- Distal non target strand dna (5'-d(p*ap*tp*tp*ap*tp*ap*tp*tp*ap*ap*tp*ap*tp*tp*ap*tp*ap*tp*tp*tp*a)-3') (6 kDa, DNA from Neisseria lactamica)
elongated Cascade complex from type I-A CRISPR-Cas system
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7r21
Q-score: 0.472
Ni D, Hu C, Nam KH, Terns M, Stahlberg H, Ke A
To Be Published
- Crrna (62-mer) (19 kDa, RNA from Escherichia coli)
- Cas11a, cas7a and type i-a crispr-associated protein cas5 (Complex from Pyrococcus furiosus DSM 3638)
- Crrna (62-mer) (Complex from Escherichia coli)
- Type i-a crispr-associated protein cas5 (29 kDa, Protein from Pyrococcus furiosus DSM 3638)
- Elongated cascade complex from pyrococcus furiosus type i-a crispr/cas system (550 kDa, Complex)
- Cas11a (12 kDa, Protein from Pyrococcus furiosus DSM 3638)
- Cas7a (36 kDa, Protein from Pyrococcus furiosus DSM 3638)