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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"Cbb3-type cytochrome c oxidase subunit"

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EMD-40601

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cytochrome bc1-cbb3 supercomplex from Pseudomonas aeruginosa

Release date: Oct. 11, 2023
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8smr
Q-score: 0.608

Di Trani JM, Gheorghita AA, Turner M, Brzezinski P, Adelroth P, Vahidi S, Howell PL, Rubinstein JL

PNAS (2023) 120 pp. e2307093120-e2307093120 [ DOI: doi:10.1073/pnas.2307093120 Pubmed: 37751552 ]

Sample:

Calcium ion (40 Da, Ligand)
Cbb3-type cytochrome c oxidase subunit (34 kDa, Protein from Pseudomonas aeruginosa)
Fe2/s2 (inorganic) cluster (175 Da, Ligand)
Cytochrome c5 (13 kDa, Protein from Pseudomonas aeruginosa)
Protoporphyrin ix containing fe (616 Da, Ligand)
Cbb3-type cytochrome c oxidase subunit ii (22 kDa, Protein from Pseudomonas aeruginosa)
Cytochrome b (46 kDa, Protein from Pseudomonas aeruginosa)
Ubiquinol-cytochrome c reductase iron-sulfur subunit (20 kDa, Protein from Pseudomonas aeruginosa)
Cytochrome c4 (18 kDa, Protein from Pseudomonas aeruginosa)
Ubiquinone-10 (863 Da, Ligand)
Cytochrome-c oxidase (52 kDa, Protein from Pseudomonas aeruginosa)
Cytochrome bc1-cbb3 supercomplex (374 MDa, Complex from Pseudomonas aeruginosa)
(2r)-2-(methoxymethyl)-4-{[(25r)-spirost-5-en-3beta-yl]oxy}butyl 4-o-alpha-d-glucopyranosyl-beta-d-glucopyranoside (855 Da, Ligand)
Copper (ii) ion (63 Da, Ligand)
Heme c (618 Da, Ligand)
Cytochrome c1 (26 kDa, Protein from Pseudomonas aeruginosa)

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EMD-40625

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cytochrome bc1-cbb3 supercomplex from Pseudomonas aeruginosa

Release date: Oct. 11, 2023
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8snh
Q-score: 0.613

Di Trani JM, Gheorghita AA, Turner M, Brzezinski P, Adelroth P, Vahidi S, Howell PL, Rubinstein JL

PNAS (2023) 120 pp. e2307093120-e2307093120 [ DOI: doi:10.1073/pnas.2307093120 Pubmed: 37751552 ]

Sample:

Calcium ion (40 Da, Ligand)
Cbb3-type cytochrome c oxidase subunit (33 kDa, Protein from Pseudomonas aeruginosa)
Fe2/s2 (inorganic) cluster (175 Da, Ligand)
Cytochrome c5 (13 kDa, Protein from Pseudomonas aeruginosa)
Protoporphyrin ix containing fe (616 Da, Ligand)
Cbb3-type cytochrome c oxidase subunit ii (22 kDa, Protein from Pseudomonas aeruginosa)
Cytochrome b (46 kDa, Protein from Pseudomonas aeruginosa)
Ubiquinol-cytochrome c reductase iron-sulfur subunit (20 kDa, Protein from Pseudomonas aeruginosa)
Cytochrome c4 (18 kDa, Protein from Pseudomonas aeruginosa)
Copper (ii) ion (63 Da, Ligand)
Cytochrome-c oxidase (52 kDa, Protein from Pseudomonas aeruginosa)
Cytochrome bc1-cbb3 supercomplex (374 MDa, Complex from Pseudomonas aeruginosa)
(2r)-2-(methoxymethyl)-4-{[(25r)-spirost-5-en-3beta-yl]oxy}butyl 4-o-alpha-d-glucopyranosyl-beta-d-glucopyranoside (855 Da, Ligand)
Ubiquinone-10 (863 Da, Ligand)
Heme c (618 Da, Ligand)
Cytochrome c1 (26 kDa, Protein from Pseudomonas aeruginosa)

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EMD-22227

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R. capsulatus CIII2CIV bipartite super-complex (SC-2A) with CcoH/cy

Release date: Dec. 30, 2020
Resolution: 5.2 Å
EM Method: Single-particle
Fitted PDBs: 6xkw
Q-score: 0.18

Steimle S, van Eeuwen T, Ozturk Y, Kim HJ, Braitbard M, Selamoglu N, Garcia BA, Schneidman-Duhovny D, Murakami K, Daldal F

Nat Commun (2021) 12 pp. 929-929 [ Pubmed: 33568648 DOI: doi:10.1038/s41467-021-21051-4 ]

Sample:

Ciii2 (Complex from Rhodobacter capsulatus SB 1003)
Heme c (618 Da, Ligand)
Cytochrome c oxidase, cbb3-type, biogenesis protein ccoh (16 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
Cytochrome c oxidase, cbb3-type, subunit ii (26 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
Civ (Complex from Rhodobacter capsulatus SB 1003)
Fe2/s2 (inorganic) cluster (175 Da, Ligand)
Ccoh/cy (Complex from Rhodobacter capsulatus SB 1003)
Ciii2civ bipartite super-complex (sc-2a) with ccoh/cy (Complex from Rhodobacter capsulatus SB 1003)
Cytochrome c oxidase, cbb3-type, subunit i (58 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
Ubiquinol-cytochrome c reductase iron-sulfur subunit (20 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
Cytochrome b (49 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
Copper (ii) ion (63 Da, Ligand)
Cytochrome c-type cyt cy (20 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
Cbb3-type cytochrome c oxidase subunit ccop (31 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
Cytochrome c1 (30 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))

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EMD-22228

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R. capsulatus CIII2CIV tripartite super-complex, conformation A (SC-1A)

Release date: Dec. 30, 2020
Resolution: 6.1 Å
EM Method: Single-particle
Fitted PDBs: 6xkx
Q-score: 0.147

Steimle S, van Eeuwen T, Ozturk Y, Kim HJ, Braitbard M, Selamoglu N, Garcia BA, Schneidman-Duhovny D, Murakami K, Daldal F

Nat Commun (2021) 12 pp. 929-929 [ Pubmed: 33568648 DOI: doi:10.1038/s41467-021-21051-4 ]

Sample:

Ciii2 (Complex from Rhodobacter capsulatus SB 1003)
Ciii2civ tripartite super-complex, conformation a (sc-1a) (Complex from Rhodobacter capsulatus SB 1003)
Civ (Complex from Rhodobacter capsulatus SB 1003)
Cytochrome c oxidase, cbb3-type, subunit ii (26 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
Fe2/s2 (inorganic) cluster (175 Da, Ligand)
Cytochrome c oxidase, cbb3-type, subunit i (58 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
Ubiquinol-cytochrome c reductase iron-sulfur subunit (20 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
Cytochrome b (49 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
Copper (ii) ion (63 Da, Ligand)
Cbb3-type cytochrome c oxidase subunit ccop,cytochrome c-type cyt cy (50 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
Heme c (618 Da, Ligand)
Cytochrome c1 (30 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))

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EMD-22230

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R. capsulatus CIII2CIV tripartite super-complex, conformation B (SC-1B)

Release date: Dec. 30, 2020
Resolution: 7.2 Å
EM Method: Single-particle
Fitted PDBs: 6xkz
Q-score: 0.122

Steimle S, van Eeuwen T, Ozturk Y, Kim HJ, Braitbard M, Selamoglu N, Garcia BA, Schneidman-Duhovny D, Murakami K, Daldal F

Nat Commun (2021) 12 pp. 929-929 [ Pubmed: 33568648 DOI: doi:10.1038/s41467-021-21051-4 ]

Sample:

Ciii2 (Complex from Rhodobacter capsulatus SB 1003)
Ciii2civ tripartite super-complex, conformation b (sc-1b) (Complex from Rhodobacter capsulatus SB 1003)
Cytochrome c oxidase, cbb3-type, subunit ii (26 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
Civ (Complex from Rhodobacter capsulatus SB 1003)
Fe2/s2 (inorganic) cluster (175 Da, Ligand)
Cytochrome c oxidase, cbb3-type, subunit i (58 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
Ubiquinol-cytochrome c reductase iron-sulfur subunit (20 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
Cytochrome b (49 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
Copper (ii) ion (63 Da, Ligand)
Cbb3-type cytochrome c oxidase subunit ccop,cytochrome c-type cyt cy (50 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))
Heme c (618 Da, Ligand)
Cytochrome c1 (30 kDa, Protein from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003))

[Show more]

Sort by: Download

Showing 1 - 5 of 5. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [5]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Field: