180 A SynPspA rod after incubation with ATP
Resolution: 4.1 Å
EM Method: Helical reconstruction
Fitted PDBs: 8akq
Q-score: 0.368
Junglas B, Hudina E, Schonnenbeck P, Ritter I, Heddier A, Santiago-Schubel B, Huesgen PF, Schneider D, Sachse C
Nat Struct Mol Biol (2024) [ DOI: doi:10.1038/s41594-024-01359-7 Pubmed: 39152237 ]
200 A SynPspA rod after incubation with ATP
Resolution: 3.8 Å
EM Method: Helical reconstruction
Fitted PDBs: 8akr
Q-score: 0.396
Junglas B, Hudina E, Schonnenbeck P, Ritter I, Heddier A, Santiago-Schubel B, Huesgen PF, Schneider D, Sachse C
Nat Struct Mol Biol (2024) [ DOI: doi:10.1038/s41594-024-01359-7 Pubmed: 39152237 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Chloroplast membrane-associated 30 kd protein (28 kDa, Protein from Synechocystis sp. PCC 6803)
- Phage shock protein a (pspa) (97 MDa, Complex from Synechocystis sp. PCC 6803)
215 A SynPspA rod after incubation with ATP
Resolution: 3.9 Å
EM Method: Helical reconstruction
Fitted PDBs: 8aks
Q-score: 0.388
Junglas B, Hudina E, Schonnenbeck P, Ritter I, Heddier A, Santiago-Schubel B, Huesgen PF, Schneider D, Sachse C
Nat Struct Mol Biol (2024) [ DOI: doi:10.1038/s41594-024-01359-7 Pubmed: 39152237 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Phage shock protein a (pspa) (111 MDa, Complex from Synechocystis sp. PCC 6803)
- Chloroplast membrane-associated 30 kd protein (28 kDa, Protein from Synechocystis sp. PCC 6803)
235 A SynPspA rod after incubation with ATP
Resolution: 4.4 Å
EM Method: Helical reconstruction
Fitted PDBs: 8akt
Q-score: 0.298
Junglas B, Hudina E, Schonnenbeck P, Ritter I, Heddier A, Santiago-Schubel B, Huesgen PF, Schneider D, Sachse C
Nat Struct Mol Biol (2024) [ DOI: doi:10.1038/s41594-024-01359-7 Pubmed: 39152237 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Chloroplast membrane-associated 30 kd protein (28 kDa, Protein from Synechocystis sp. PCC 6803)
- Phage shock protein a (pspa) (120 MDa, Complex from Synechocystis sp. PCC 6803)
Cryo-EM structure of the Photosystem II - LHCII supercomplex from Chlorella ohadi
Resolution: 2.73 Å
EM Method: Single-particle
Fitted PDBs: 8bd3
Q-score: 0.574
Fadeeva M, Klaiman D, Caspy I, Nelson N
Cells (2023) 12 [ Pubmed: 37566050 DOI: doi:10.3390/cells12151971 ]
- Photosystem ii d2 protein (38 kDa, Protein from Chlorella ohadii)
- Photosystem ii reaction center protein ycf12 (3 kDa, Protein from Chlorella ohadii)
- Chloroplast psby (3 kDa, Protein from Chlorella ohadii)
- Chlorophyll a b-binding cp26 (27 kDa, Protein from Chlorella ohadii)
- Photosystem ii reaction center protein m (5 kDa, Protein from Chlorella ohadii)
- Beta-carotene (536 Da, Ligand)
- Chloroplast photosystem ii 10 kda protein (11 kDa, Protein from Chlorella ohadii)
- Photosystem ii reaction center protein k (4 kDa, Protein from Chlorella ohadii)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlorella ohadii)
- Photosystem ii reaction center protein x (3 kDa, Protein from Chlorella ohadii)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- (3r)-beta,beta-caroten-3-ol (552 Da, Ligand)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem ii reaction center protein l (4 kDa, Protein from Chlorella ohadii)
- Photosystem ii cp43 reaction center protein (49 kDa, Protein from Chlorella ohadii)
- Chloroplast oxygen-evolving enhancer protein 1 (25 kDa, Protein from Chlorella ohadii)
- Chlorella ohadii photosystem ii (1 MDa, Complex from Chlorella ohadii)
- Photosystem ii reaction center protein i (3 kDa, Protein from Chlorella ohadii)
- Ca-mn4-o5 cluster (339 Da, Ligand)
- Chloroplast oxygen-evolving enhancer protein 3 (15 kDa, Protein from Chlorella ohadii)
- Cytochrome b559 subunit alpha (9 kDa, Protein from Chlorella ohadii)
- Photosystem ii reaction center protein j (3 kDa, Protein from Chlorella ohadii)
- Chlorophyll b (907 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Bicarbonate ion (61 Da, Ligand)
- Pheophytin a (871 Da, Ligand)
- Photosystem ii protein d1 (37 kDa, Protein from Chlorella ohadii)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Fe (ii) ion (55 Da, Ligand)
- Photosystem ii reaction center w protein (6 kDa, Protein from Chlorella ohadii)
- Photosystem ii oxygen evolving enhancer 2 (20 kDa, Protein from Chlorella ohadii)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Chlorophyll a-b binding of lhcii (23 kDa, Protein from Chlorella ohadii)
- Multifunctional fusion protein (23 kDa, Protein from Chlorella ohadii)
- Chlorophyll a b binding cp29 (25 kDa, Protein from Chlorella ohadii)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlorella ohadii)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Water (18 Da, Ligand)
- Cytochrome b559 subunit beta (4 kDa, Protein from Chlorella ohadii)
- Photosystem ii reaction center protein h (7 kDa, Protein from Chlorella ohadii)
- Photosystem ii cp47 reaction center protein (55 kDa, Protein from Chlorella ohadii)
- Chloride ion (35 Da, Ligand)
- Chlorophyll a-b binding of lhcii (23 kDa, Protein from Chlorella ohadii)
- Photosystem ii reaction center protein z (6 kDa, Protein from Chlorella ohadii)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
- Photosystem ii reaction center protein t (3 kDa, Protein from Chlorella ohadii)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7eu3
Q-score: 0.402
Shen L, Tang K, Wang W, Wang C, Wu H, Mao Z, An S, Chang S, Kuang T, Shen JR, Han G, Zhang X
Nature (2022) 601 pp. 649-654 [ Pubmed: 34879391 DOI: doi:10.1038/s41586-021-04277-6 ]
- Photosynthetic ndh subunit of subcomplex b5 (18 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex b1 (51 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex l3 (24 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Beta-carotene (536 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit j (18 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Unidentified stromal protein (5 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex l1 (17 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit n (25 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex b3 (13 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex l4 (13 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit l (22 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit m (24 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit 4l, chloroplastic (11 kDa, Protein from Hordeum vulgare)
- Nad(p)h-quinone oxidoreductase subunit 6, chloroplastic (19 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex l5 (25 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit 2, chloroplastic (53 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chloroplast ndh complex of barley (Complex from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit 1, chloroplastic (38 kDa, Protein from Hordeum vulgare)
- Nad(p)h-quinone oxidoreductase subunit f (87 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex b4 (9 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit h, chloroplastic (44 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Photosynthetic ndh subunit of subcomplex b2 (38 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit k, chloroplastic (27 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit 3, chloroplastic (13 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase chain 4, chloroplastic (56 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex l2 (23 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Iron/sulfur cluster (351 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit i, chloroplastic (19 kDa, Protein from Hordeum vulgare)
Chloroplast ATP synthase (C1, CF1FO)
Resolution: 5.23 Å
EM Method: Single-particle
Fitted PDBs: 6vmb
Q-score: 0.213
Yang JH, Williams D, Kandiah E, Fromme P, Chiu PL
Commun Biol (2020) 3 pp. 482-482 [ DOI: doi:10.1038/s42003-020-01221-8 Pubmed: 32879423 ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Atp synthase subunit b', chloroplastic (24 kDa, Protein from Spinacia oleracea)
- Atp synthase subunit b, chloroplastic (21 kDa, Protein from Spinacia oleracea)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Atp synthase gamma chain, chloroplastic (40 kDa, Protein from Spinacia oleracea)
- Atp synthase epsilon chain, chloroplastic (14 kDa, Protein from Spinacia oleracea)
- Atp synthase subunit beta, chloroplastic (53 kDa, Protein from Spinacia oleracea)
- Atp synthase subunit a, chloroplastic (27 kDa, Protein from Spinacia oleracea)
- Chloroplast atp synthase (594 kDa, Complex from Spinacia oleracea)
- Atp synthase delta chain, chloroplastic (27 kDa, Protein from Spinacia oleracea)
- Atp synthase subunit c, chloroplastic (7 kDa, Protein from Spinacia oleracea)
- Atp synthase subunit alpha, chloroplastic (55 kDa, Protein from Spinacia oleracea)
Chloroplast ATP synthase (C1, CF1)
Resolution: 4.53 Å
EM Method: Single-particle
Fitted PDBs: 6vmd
Q-score: 0.327
Yang JH, Williams D, Kandiah E, Fromme P, Chiu PL
Commun Biol (2020) 3 pp. 482-482 [ DOI: doi:10.1038/s42003-020-01221-8 Pubmed: 32879423 ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Atp synthase gamma chain, chloroplastic (40 kDa, Protein from Spinacia oleracea)
- Atp synthase epsilon chain, chloroplastic (14 kDa, Protein from Spinacia oleracea)
- Atp synthase subunit beta, chloroplastic (53 kDa, Protein from Spinacia oleracea)
- Chloroplast atp synthase (594 kDa, Complex from Spinacia oleracea)
- Atp synthase delta chain, chloroplastic (27 kDa, Protein from Spinacia oleracea)
- Atp synthase subunit alpha, chloroplastic (55 kDa, Protein from Spinacia oleracea)
Chloroplast ATP synthase (O2, CF1FO)
Resolution: 4.51 Å
EM Method: Single-particle
Fitted PDBs: 6vof
Q-score: 0.317
Yang JH, Williams D, Kandiah E, Fromme P, Chiu PL
Commun Biol (2020) 3 pp. 482-482 [ DOI: doi:10.1038/s42003-020-01221-8 Pubmed: 32879423 ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Atp synthase subunit b', chloroplastic (24 kDa, Protein from Spinacia oleracea)
- Atp synthase subunit b, chloroplastic (21 kDa, Protein from Spinacia oleracea)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Atp synthase gamma chain, chloroplastic (40 kDa, Protein from Spinacia oleracea)
- Atp synthase epsilon chain, chloroplastic (14 kDa, Protein from Spinacia oleracea)
- Atp synthase subunit beta, chloroplastic (53 kDa, Protein from Spinacia oleracea)
- Atp synthase subunit a, chloroplastic (27 kDa, Protein from Spinacia oleracea)
- Chloroplast atp synthase (594 kDa, Complex from Spinacia oleracea)
- Atp synthase delta chain, chloroplastic (27 kDa, Protein from Spinacia oleracea)
- Atp synthase subunit c, chloroplastic (7 kDa, Protein from Spinacia oleracea)
- Atp synthase subunit alpha, chloroplastic (55 kDa, Protein from Spinacia oleracea)
Chloroplast ATP synthase (O2, CF1)
Resolution: 4.35 Å
EM Method: Single-particle
Fitted PDBs: 6vog
Q-score: 0.343
Yang JH, Williams D, Kandiah E, Fromme P, Chiu PL
Commun Biol (2020) 3 pp. 482-482 [ DOI: doi:10.1038/s42003-020-01221-8 Pubmed: 32879423 ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Atp synthase gamma chain, chloroplastic (40 kDa, Protein from Spinacia oleracea)
- Atp synthase epsilon chain, chloroplastic (14 kDa, Protein from Spinacia oleracea)
- Atp synthase subunit beta, chloroplastic (53 kDa, Protein from Spinacia oleracea)
- Chloroplast atp synthase (594 kDa, Complex from Spinacia oleracea)
- Atp synthase delta chain, chloroplastic (27 kDa, Protein from Spinacia oleracea)
- Atp synthase subunit alpha, chloroplastic (55 kDa, Protein from Spinacia oleracea)