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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

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perform basic research in molecular biology

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represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

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Structural biology

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Structural biology

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EMBL-EBI: European Bioinformatics Institute

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sample_name:"CoB--CoM heterodisulfide reductase subunit B"

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EMD-12206

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Formate dehydrogenase - heterodisulfide reductase - formylmethanofuran dehydrogenase complex from Methanospirillum hungatei (hexameric, composite structure)

Release date: Sept. 29, 2021
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7bkb
Q-score: 0.348

Watanabe T, Pfeil-Gardiner O, Kahnt J, Koch J, Shima S, Murphy BJ

Science (2021) 373 pp. 1151-1156 [ Pubmed: 34516836 DOI: doi:10.1126/science.abg5550 ]

Sample:

Formylmethanofuran dehydrogenase (28 kDa, Protein from Methanospirillum hungatei JF-1)
Fe2/s2 (inorganic) cluster (175 Da, Ligand)
Cob--com heterodisulfide reductase iron-sulfur subunit a (72 kDa, Protein from Methanospirillum hungatei JF-1)
Non-cubane [4fe-4s]-cluster (351 Da, Ligand)
Formate dehydrogenase, beta subunit (f420) (45 kDa, Protein from Methanospirillum hungatei JF-1)
Formylmethanofuran dehydrogenase, subunit d (15 kDa, Protein from Methanospirillum hungatei JF-1)
Formylmethanofuran dehydrogenase, subunit a (63 kDa, Protein from Methanospirillum hungatei JF-1)
Flavin-adenine dinucleotide (785 Da, Ligand)
Formate dehydrogenase (75 kDa, Protein from Methanospirillum hungatei JF-1)
Cob--com heterodisulfide reductase subunit b (32 kDa, Protein from Methanospirillum hungatei JF-1)
Formylmethanofuran dehydrogenase, subunit g (16 kDa, Protein from Methanospirillum hungatei JF-1)
2-amino-5,6-dimercapto-7-methyl-3,7,8a,9-tetrahydro-8-oxa-1,3,9,10-tetraaza-anthracen-4-one guanosine dinucleotide (740 Da, Ligand)
Molybdenum atom (95 Da, Ligand)
Zinc ion (65 Da, Ligand)
Dimeric formate dehydrogenase - heterodisulfide reductase - formylmethanofuran dehydrogenase complex (948 kDa, Complex from Methanospirillum hungatei JF-1)
F420-non-reducing hydrogenase subunit d (15 kDa, Protein from Methanospirillum hungatei JF-1)
Cob--com heterodisulfide reductase subunit c (21 kDa, Protein from Methanospirillum hungatei JF-1)
Iron/sulfur cluster (351 Da, Ligand)
Formylmethanofuran dehydrogenase, subunit f (42 kDa, Protein from Methanospirillum hungatei JF-1)
Formylmethanofuran dehydrogenase, subunit b (49 kDa, Protein from Methanospirillum hungatei JF-1)

[Show more]

EMD-12209

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Formate dehydrogenase - heterodisulfide reductase - formylmethanofuran dehydrogenase complex from Methanospirillum hungatei (dimeric, composite structure)

Release date: Sept. 29, 2021
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7bkc
Q-score: 0.569

Watanabe T, Pfeil-Gardiner O, Kahnt J, Koch J, Shima S, Murphy BJ

Science (2021) 373 pp. 1151-1156 [ Pubmed: 34516836 DOI: doi:10.1126/science.abg5550 ]

Sample:

Formylmethanofuran dehydrogenase (28 kDa, Protein from Methanospirillum hungatei JF-1)
Fe2/s2 (inorganic) cluster (175 Da, Ligand)
Cob--com heterodisulfide reductase iron-sulfur subunit a (72 kDa, Protein from Methanospirillum hungatei JF-1)
Non-cubane [4fe-4s]-cluster (351 Da, Ligand)
Formate dehydrogenase, beta subunit (f420) (45 kDa, Protein from Methanospirillum hungatei JF-1)
Formylmethanofuran dehydrogenase, subunit d (15 kDa, Protein from Methanospirillum hungatei JF-1)
Formylmethanofuran dehydrogenase, subunit a (63 kDa, Protein from Methanospirillum hungatei JF-1)
Flavin-adenine dinucleotide (785 Da, Ligand)
Formate dehydrogenase (75 kDa, Protein from Methanospirillum hungatei JF-1)
Cob--com heterodisulfide reductase subunit b (32 kDa, Protein from Methanospirillum hungatei JF-1)
Formylmethanofuran dehydrogenase, subunit g (16 kDa, Protein from Methanospirillum hungatei JF-1)
2-amino-5,6-dimercapto-7-methyl-3,7,8a,9-tetrahydro-8-oxa-1,3,9,10-tetraaza-anthracen-4-one guanosine dinucleotide (740 Da, Ligand)
Molybdenum atom (95 Da, Ligand)
Zinc ion (65 Da, Ligand)
Dimeric formate dehydrogenase - heterodisulfide reductase - formylmethanofuran dehydrogenase complex (948 kDa, Complex from Methanospirillum hungatei JF-1)
F420-non-reducing hydrogenase subunit d (15 kDa, Protein from Methanospirillum hungatei JF-1)
Cob--com heterodisulfide reductase subunit c (21 kDa, Protein from Methanospirillum hungatei JF-1)
Iron/sulfur cluster (351 Da, Ligand)
Formylmethanofuran dehydrogenase, subunit f (42 kDa, Protein from Methanospirillum hungatei JF-1)
Formylmethanofuran dehydrogenase, subunit b (49 kDa, Protein from Methanospirillum hungatei JF-1)

[Show more]

EMD-12210

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Formate dehydrogenase - heterodisulfide reductase - formylmethanofuran dehydrogenase complex from Methanospirillum hungatei (heterodislfide reductase core and mobile arm in conformational state 1, composite structure)

Release date: Sept. 29, 2021
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7bkd
Q-score: 0.597

Watanabe T, Pfeil-Gardiner O, Kahnt J, Koch J, Shima S, Murphy BJ

Science (2021) 373 pp. 1151-1156 [ Pubmed: 34516836 DOI: doi:10.1126/science.abg5550 ]

Sample:

Non-cubane [4fe-4s]-cluster (351 Da, Ligand)
Formate dehydrogenase (75 kDa, Protein from Methanospirillum hungatei JF-1)
Dimeric formate dehydrogenase - heterodisulfide reductase - formylmethanofuran dehydrogenase complex (948 kDa, Complex from Methanospirillum hungatei JF-1)
Cob--com heterodisulfide reductase subunit b (32 kDa, Protein from Methanospirillum hungatei JF-1)
Fe2/s2 (inorganic) cluster (175 Da, Ligand)
Cob--com heterodisulfide reductase iron-sulfur subunit a (72 kDa, Protein from Methanospirillum hungatei JF-1)
F420-non-reducing hydrogenase subunit d (15 kDa, Protein from Methanospirillum hungatei JF-1)
Cob--com heterodisulfide reductase subunit c (21 kDa, Protein from Methanospirillum hungatei JF-1)
Formate dehydrogenase, beta subunit (f420) (45 kDa, Protein from Methanospirillum hungatei JF-1)
Iron/sulfur cluster (351 Da, Ligand)
Flavin-adenine dinucleotide (785 Da, Ligand)

[Show more]

EMD-12212

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Formate dehydrogenase - heterodisulfide reductase - formylmethanofuran dehydrogenase complex from Methanospirillum hungatei (heterodisulfide reductase core and mobile arm in conformational state 2, composite structure)

Release date: Sept. 29, 2021
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7bke
Q-score: 0.618

Watanabe T, Pfeil-Gardiner O, Kahnt J, Koch J, Shima S, Murphy BJ

Science (2021) 373 pp. 1151-1156 [ Pubmed: 34516836 DOI: doi:10.1126/science.abg5550 ]

Sample:

Non-cubane [4fe-4s]-cluster (351 Da, Ligand)
Formate dehydrogenase (75 kDa, Protein from Methanospirillum hungatei JF-1)
Dimeric formate dehydrogenase - heterodisulfide reductase - formylmethanofuran dehydrogenase complex (948 kDa, Complex from Methanospirillum hungatei JF-1)
Cob--com heterodisulfide reductase subunit b (32 kDa, Protein from Methanospirillum hungatei JF-1)
Fe2/s2 (inorganic) cluster (175 Da, Ligand)
Cob--com heterodisulfide reductase iron-sulfur subunit a (72 kDa, Protein from Methanospirillum hungatei JF-1)
F420-non-reducing hydrogenase subunit d (15 kDa, Protein from Methanospirillum hungatei JF-1)
Cob--com heterodisulfide reductase subunit c (21 kDa, Protein from Methanospirillum hungatei JF-1)
Formate dehydrogenase, beta subunit (f420) (45 kDa, Protein from Methanospirillum hungatei JF-1)
Iron/sulfur cluster (351 Da, Ligand)
Flavin-adenine dinucleotide (785 Da, Ligand)

[Show more]

Sort by: Download

Showing 1 - 4 of 4. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [4]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Field: