RNA polymerase I pre-initiation complex
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 5oa1
Q-score: 0.189
Sadian Y, Tafur L, Kosinski J, Jakobi AJ, Wetzel R, Buczak K, Hagen WJ, Beck M, Sachse C, Muller CW
EMBO J (2017) 36 pp. 2698-2709 [ Pubmed: 28739580 DOI: doi:10.15252/embj.201796958 ]
- Rrn3_yeast rna polymerase i-specific transcription initiation factor rrn3 (Protein from Saccharomyces cerevisiae)
- Rna polymerase i pre-initiation complex with core factor, rrn3 and transcription scaffold (Complex from Saccharomyces cerevisiae)
- Rrn6_yeast rna polymerase i-specific transcription initiation factor rrn6 (Protein from Saccharomyces cerevisiae)
- Non-template dna strand (DNA from synthetic construct)
- Rpab1_yeast dna-directed rna polymerases i, ii, and iii subunit rpabc1 (Protein from Saccharomyces cerevisiae)
- Rpac1_yeast dna-directed rna polymerases i and iii subunit rpac1 (Protein from Saccharomyces cerevisiae)
- Rpab2_yeast dna-directed rna polymerases i, ii, and iii subunit rpabc2 (Protein from Saccharomyces cerevisiae)
- Rpa49_yeast dna-directed rna polymerase i subunit (Protein from Saccharomyces cerevisiae)
- Rpab4_yeast dna-directed rna polymerases i, ii, and iii subunit rpabc4 (Protein from Saccharomyces cerevisiae)
- Rpa34_yeast dna-directed rna polymerase i subunit rpa34 (Protein from Saccharomyces cerevisiae)
- Rpac2_yeast dna-directed rna polymerases i and iii subunit rpac2 (Protein from Saccharomyces cerevisiae)
- Rpa14_yeast dna-directed rna polymerase i subunit rpa14 (Protein from Saccharomyces cerevisiae)
- Rrn7_yeast rna polymerase i-specific transcription initiation factor rrn7 (Protein from Saccharomyces cerevisiae)
- Rna polymerase i pre-initiation complex with core factor, rrn3 and transcription scaffold (Complex)
- Rpab3_yeast dna-directed rna polymerases i, ii, and iii subunit rpabc3 (Protein from Saccharomyces cerevisiae)
- Rpa43_yeast dna-directed rna polymerase i subunit (Protein from Saccharomyces cerevisiae)
- Rpab5_yeast dna-directed rna polymerases i, ii, and iii subunit rpabc5 (Protein from Saccharomyces cerevisiae)
- Rpa1_yeast dna-directed rna polymerase i subunit rpa190 (Protein from Saccharomyces cerevisiae)
- Rrn11_yeast rna polymerase i-specific transcription initiation factor rrn11 (Protein from Saccharomyces cerevisiae)
- Template dna strand (DNA from synthetic construct)
- Rna polymerase i pre-initiation complex with core factor, rrn3 and transcription scaffold (875 MDa, Complex)
- Rpa12_yeast dna-directed rna polymerase i subunit rpa12 (Protein from Saccharomyces cerevisiae)
- Rpa2_yeast dna-directed rna polymerase i subunit rpa135 (Protein from Saccharomyces cerevisiae)
RNA polymerase I pre-initiation complex (CF focused refinement)
Sadian Y, Tafur L, Kosinski J, Jakobi AJ, Wetzel R, Buczak K, Hagen WJ, Beck M, Sachse C, Muller CW
EMBO J (2017) 36 pp. 2698-2709 [ Pubmed: 28739580 DOI: doi:10.15252/embj.201796958 ]
- Rrn11_yeast rna polymerase i-specific transcription initiation factor rrn11 (Protein)
- Rrn6_yeast rna polymerase i-specific transcription initiation factor rrn6 (Protein)
- Rna polymerase i pre-initiation complex with core factor, rrn3 and transcription scaffold (Complex from Saccharomyces cerevisiae)
- Template strand dna (DNA)
- Non-template strand dna (DNA)
- Rrn7_yeast rna polymerase i-specific transcription initiation factor rrn7 (Protein)
RNA polymerase I pre-initiation complex (Pol-Rrn3 focused refinement)
Sadian Y, Tafur L, Kosinski J, Jakobi AJ, Wetzel R, Buczak K, Hagen WJ, Beck M, Sachse C, Muller CW
EMBO J (2017) 36 pp. 2698-2709 [ Pubmed: 28739580 DOI: doi:10.15252/embj.201796958 ]
- Rpa1_yeast dna-directed rna polymerase i subunit rpa190 (Protein)
- Rpa34_yeast dna-directed rna polymerase i subunit rpa34 (Protein)
- Rpab4_yeast dna-directed rna polymerases i, ii, and iii subunit rpabc4 (Protein)
- Rrn3_yeast rna polymerase i-specific transcription initiation factor rrn3 (Protein)
- Rpab3_yeast dna-directed rna polymerases i, ii, and iii subunit rpabc3 (Protein)
- Rpa43_yeast dna-directed rna polymerase i subunit rpa43 (Protein)
- Rpa49_yeast dna-directed rna polymerase i subunit rpa49 (Protein)
- Template dna strand (DNA)
- Rpac2_yeast dna-directed rna polymerases i and iii subunit rpac2 (Protein)
- Non-template dna strand (DNA)
- Rna polymerase i pre-initiation complex with core factor, rrn3 and transcription scaffold (Complex from Saccharomyces cerevisiae)
- Rpab1_yeast dna-directed rna polymerases i, ii, and iii subunit rpabc1 (Protein)
- Rpab5_yeast dna-directed rna polymerases i, ii, and iii subunit rpabc5 (Protein)
- Rpa12_yeast dna-directed rna polymerase i subunit rpa12 (Protein)
- Rpa2_yeast dna-directed rna polymerase i subunit rpa135 (Protein)
- Rpa14_yeast dna-directed rna polymerase i subunit rpa14 (Protein)
- Rpac1_yeast dna-directed rna polymerases i and iii subunit rpac1 (Protein)
- Rpab2_yeast dna-directed rna polymerases i, ii, and iii subunit rpabc2 (Protein)
Core Factor local refinement from Pol I Initial Transcribing Complex at 4.2 angstrom
Han Y, Yan C, Nguyen THD, Jackobel AJ, Ivanov I, Knutson BA, He Y
eLife (2017) 6 [ DOI: doi:10.7554/eLife.27414 Pubmed: 28623663 ]
- Rrn6 (Protein from Saccharomyces cerevisiae S288c)
- Non-template strand dna (DNA from Saccharomyces cerevisiae S288c)
- Template dna (DNA from Saccharomyces cerevisiae S288c)
- Yeast core factor (250 kDa, Complex from Saccharomyces cerevisiae S288c)
- Rrn11 (Protein from Saccharomyces cerevisiae S288c)
- Rrn7 (Protein from Saccharomyces cerevisiae S288c)
RNA polymerase I initially transcribing complex with visible tandem Winged Helix domain
Resolution: 6.9 Å
EM Method: Single-particle
Fitted PDBs: 5n61
Q-score: 0.139
Engel C, Gubbey T, Neyer S, Sainsbury S, Oberthuer C, Baejen C, Bernecky C, Cramer P
Cell (2017) 169 pp. 120-131.e22 [ DOI: doi:10.1016/j.cell.2017.03.003 Pubmed: 28340337 ]
- Initiation factor rrn3 (70 kDa, Complex from Saccharomyces cerevisiae)
- Rna polymerase i initially transcribing complex (Complex)
- Core factor (220 kDa, Complex from Saccharomyces cerevisiae)
- Rna polymerase i (590 kDa, Complex from Saccharomyces cerevisiae)
- Initial transcription dna/rna scaffold (60 kDa, Complex from Saccharomyces cerevisiae)
Cryo-EM structure of RNA polymerase I in complex with Rrn3 and Core Factor (Orientation III)
Resolution: 7.7 Å
EM Method: Single-particle
Fitted PDBs: 5n5y
Q-score: 0.136
Engel C, Gubbey T, Neyer S, Sainsbury S, Oberthuer C, Baejen C, Bernecky C, Cramer P
Cell (2017) 169 pp. 120-131.e22 [ DOI: doi:10.1016/j.cell.2017.03.003 Pubmed: 28340337 ]
- Dna-directed rna polymerases i and iii subunit rpac1 (37 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerase i subunit rpa43 (36 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerase i subunit rpa135 (135 kDa, Protein from Baker's yeast)
- Rna polymerase i (590 kDa, Complex from Saccharomyces cerevisiae)
- Sulfate ion (96 Da, Ligand)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (25 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerase i subunit rpa14 (14 kDa, Protein from Baker's yeast)
- Rna polymerase i-specific transcription initiation factor rrn6 (102 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa12 (13 kDa, Protein from Baker's yeast)
- Rna polymerase i-specific transcription initiation factor rrn3 (72 kDa, Protein from Saccharomyces cerevisiae)
- Core factor (220 kDa, Complex from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (16 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerase i subunit rpa49 (46 kDa, Protein from Baker's yeast)
- Rna polymerase i-specific transcription initiation factor rrn7 (60 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa34 (26 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Baker's yeast)
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (8 kDa, Protein from Baker's yeast)
- Initiation factor rrn3 (70 kDa, Complex from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- Rna polymerase i-specific transcription initiation factor rrn11 (59 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (17 kDa, Protein from Baker's yeast)
- Rna polymerase i in complex with rrn3 and core factor (Complex)
- Dna-directed rna polymerase i subunit rpa190 (186 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerases i and iii subunit rpac2 (16 kDa, Protein from Baker's yeast)
Resolution: 7.7 Å
EM Method: Single-particle
Fitted PDBs: 5n5z
Q-score: 0.116
Engel C, Gubbey T, Neyer S, Sainsbury S, Oberthuer C, Baejen C, Bernecky C, Cramer P
Cell (2017) 169 pp. 120-131.e22 [ DOI: doi:10.1016/j.cell.2017.03.003 Pubmed: 28340337 ]
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Saccharomyces cerevisiae)
- Rna polymerase i (590 kDa, Complex from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (8 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa49 (46 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (16 kDa, Protein from Saccharomyces cerevisiae)
- Rna polymerase i-specific transcription initiation factor rrn6 (102 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa34 (26 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (25 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i and iii subunit rpac1 (37 kDa, Protein from Saccharomyces cerevisiae)
- Rna polymerase i-specific transcription initiation factor rrn3 (72 kDa, Protein from Saccharomyces cerevisiae)
- Core factor (220 kDa, Complex from Saccharomyces cerevisiae)
- Rna polymerase i-specific transcription initiation factor rrn7 (60 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (17 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa135 (135 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa43 (36 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i and iii subunit rpac2 (16 kDa, Protein from Saccharomyces cerevisiae)
- Initiation factor rrn3 (70 kDa, Complex from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- Rna polymerase i-specific transcription initiation factor rrn11 (59 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa14 (14 kDa, Protein from Saccharomyces cerevisiae)
- Rna polymerase i in complex with rrn3 and core factor (Complex)
- Dna-directed rna polymerase i subunit rpa12 (13 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa190 (186 kDa, Protein from Saccharomyces cerevisiae)
Cryo-EM structure of RNA polymerase I in complex with Rrn3 and Core Factor (Orientation I)
Resolution: 7.7 Å
EM Method: Single-particle
Fitted PDBs: 5n60
Q-score: 0.102
Engel C, Gubbey T, Neyer S, Sainsbury S, Oberthuer C, Baejen C, Bernecky C, Cramer P
Cell (2017) 169 pp. 120-131.e22 [ DOI: doi:10.1016/j.cell.2017.03.003 Pubmed: 28340337 ]
- Dna-directed rna polymerase i subunit rpa34 (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa14 (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Core factor (220 kDa, Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa190 (186 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rna polymerase i (590 kDa, Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i and iii subunit rpac2 (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Initiation factor rrn3 (70 kDa, Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa43 (36 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa49 (46 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa12 (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa135 (135 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rna polymerase i-specific transcription initiation factor rrn6 (102 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i and iii subunit rpac1 (37 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rna polymerase i-specific transcription initiation factor rrn11 (59 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rna polymerase i-specific transcription initiation factor rrn3 (72 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (8 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rna polymerase i-specific transcription initiation factor rrn7 (60 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Zinc ion (65 Da, Ligand)
- Rna polymerase i in complex with rrn3 and core factor (Complex)
RNA polymerase I initially transcribing complex
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 5n61
Q-score: 0.343
Engel C, Gubbey T, Neyer S, Sainsbury S, Oberthuer C, Baejen C, Bernecky C, Cramer P
Cell (2017) 169 pp. 120-131.e22 [ DOI: doi:10.1016/j.cell.2017.03.003 Pubmed: 28340337 ]
- Dna-directed rna polymerase i subunit rpa34 (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rna polymerase i-specific transcription initiation factor rrn6 (102 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa14 (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa190 (186 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rna polymerase i initially transcribing complex (950 kDa, Complex)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i and iii subunit rpac2 (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rna polymerase i-specific transcription initiation factor rrn7 (60 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa43 (36 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa49 (46 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Product rna (1 kDa, RNA from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa12 (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Initiation factor rrn3 (70 kDa, Complex from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa135 (135 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i and iii subunit rpac1 (37 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Core factor (220 kDa, Complex from Saccharomyces cerevisiae)
- Template dna (13 kDa, DNA from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (8 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rna polymerase i (590 kDa, Complex from Saccharomyces cerevisiae)
- Rna polymerase i-specific transcription initiation factor rrn3 (72 kDa, Protein from Saccharomyces cerevisiae)
- Non-template dna (12 kDa, DNA from Saccharomyces cerevisiae)
- Sulfate ion (96 Da, Ligand)
- Rna polymerase i-specific transcription initiation factor rrn11 (59 kDa, Protein from Saccharomyces cerevisiae)
- Initial transcription dna/rna scaffold (60 kDa, Complex from Saccharomyces cerevisiae)