Electron Microscopy Data Bank

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Respiratory Complex IV from S. cerevisiae

Release date: Aug. 3, 2022
Resolution: 3.87 Å
EM Method: Single-particle
Fitted PDBs: 7z10
Q-score: 0.433

Ing G, Hartley AM, Pinotsis N, Marechal A

Biochim Biophys Acta Bioenerg (2022) 1863 pp. 148591-148591 [ Pubmed: 35839926 DOI: doi:10.1016/j.bbabio.2022.148591 ]

Sample:

Zinc ion (65 Da, Ligand)
Dinuclear copper ion (127 Da, Ligand)
Cytochrome c oxidase subunit 2 (26 kDa, Protein from Saccharomyces cerevisiae S288C)
Cytochrome c oxidase (Complex from Saccharomyces cerevisiae S288C)
Cytochrome c oxidase subunit 4, mitochondrial (13 kDa, Protein from Saccharomyces cerevisiae S288C)
Heme-a (852 Da, Ligand)
Cytochrome c oxidase polypeptide viii, mitochondrial (5 kDa, Protein from Saccharomyces cerevisiae S288C)
Cytochrome c oxidase subunit 7; synonym: cytochrome c oxidase polypeptide vii, cox7 (6 kDa, Protein from Saccharomyces cerevisiae S288C)
Cytochrome c oxidase (Complex)
Di-palmitoyl-3-sn-phosphatidylethanolamine (691 Da, Ligand)
Copper (ii) ion (63 Da, Ligand)
Cytochrome c oxidase subunit 1 (58 kDa, Protein from Saccharomyces cerevisiae S288C)
Magnesium ion (24 Da, Ligand)
Cytochrome c oxidase subunit 6, mitochondrial (12 kDa, Protein from Saccharomyces cerevisiae S288C)
Cytochrome c oxidase polypeptide 5a, mitochondrial (14 kDa, Protein from Saccharomyces cerevisiae S288C)
Cytochrome c oxidase subunit 3; synonym: cytochrome c oxidase polypeptide iii, cox3 (30 kDa, Protein from Saccharomyces cerevisiae S288C)
Cytochrome c oxidase subunit 7a; synonym: cytochrome c oxidase polypeptide viia, cox9 (6 kDa, Protein from Saccharomyces cerevisiae S288C)

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EMD-22447

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Plant Mitochondrial complex III2 from Vigna radiata

Release date: Jan. 20, 2021
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7jro
Q-score: 0.482

Maldonado M, Guo F, Letts JA

eLife (2021) 10 [ DOI: doi:10.7554/eLife.62047 Pubmed: 33463523 ]

Sample:

Cytochrome c oxidase subunit 6b-1 (20 kDa, Protein from Vigna radiata var. radiata)
Copper (ii) ion (63 Da, Ligand)
Dinuclear copper ion (127 Da, Ligand)
1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
Cox7c (10 kDa, Protein from Vigna radiata var. radiata)
Cytochrome c oxidase subunit 2 (28 kDa, Protein from Vigna radiata var. radiata)
Mitochondrial respiratory complex iv (485 kDa, Complex from Vigna radiata)
Cox7a (7 kDa, Protein from Vigna radiata var. radiata)
Heme-a (852 Da, Ligand)
Cox3 (29 kDa, Protein from Vigna radiata)
Magnesium ion (24 Da, Ligand)
Cox1 (57 kDa, Protein from Vigna radiata)
Cox4 (8 kDa, Protein from Vigna radiata var. radiata)
Cytochrome c oxidase subunit 5c (7 kDa, Protein from Vigna radiata var. radiata)
Lysine (147 Da, Ligand)
Zinc ion (65 Da, Ligand)
1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
Cytochrome c oxidase subunit 6a, mitochondrial (11 kDa, Protein from Vigna radiata var. radiata)
Cardiolipin (1 kDa, Ligand)
Cytochrome c oxidase subunit 5b-2, mitochondrial (16 kDa, Protein from Vigna radiata var. radiata)

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EMD-22448

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Plant Mitochondrial complex SC III2+IV from Vigna radiata composite map

Release date: Jan. 20, 2021
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7jrp
Q-score: 0.463

Maldonado M, Guo F, Letts JA

eLife (2021) 10 [ DOI: doi:10.7554/eLife.62047 Pubmed: 33463523 ]

Sample:

Cytochrome c oxidase subunit 6b-1 (20 kDa, Protein from Vigna radiata var. radiata)
Cytochrome b-c1 complex subunit 6 (8 kDa, Protein from Vigna radiata var. radiata)
Mitochondrial respiratory complex iii2 (485 kDa, Complex from Vigna radiata)
Cytochrome b-c1 complex subunit 8 (8 kDa, Protein from Vigna radiata var. radiata)
Alpha-mpp (54 kDa, Protein from Vigna radiata var. radiata)
Copper (ii) ion (63 Da, Ligand)
Heme c (618 Da, Ligand)
Qcr10 (8 kDa, Protein from Vigna radiata)
Dinuclear copper ion (127 Da, Ligand)
1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
Cox7c (10 kDa, Protein from Vigna radiata var. radiata)
Cytochrome c oxidase subunit 2 (28 kDa, Protein from Vigna radiata var. radiata)
Cytochrome c1-2, heme protein, mitochondrial (33 kDa, Protein from Vigna radiata var. radiata)
Cox7a (7 kDa, Protein from Vigna radiata var. radiata)
Mitochondrial-processing peptidase subunit beta, mitochondrial isoform x1 (58 kDa, Protein from Vigna radiata var. radiata)
Heme-a (852 Da, Ligand)
Cox3 (29 kDa, Protein from Vigna radiata)
Magnesium ion (24 Da, Ligand)
Cytochrome b-c1 complex subunit 7 (14 kDa, Protein from Vigna radiata var. radiata)
Cox1 (57 kDa, Protein from Vigna radiata)
Cox4 (8 kDa, Protein from Vigna radiata var. radiata)
Cob (44 kDa, Protein from Vigna radiata)
Cytochrome c oxidase subunit 5c (7 kDa, Protein from Vigna radiata var. radiata)
Lysine (147 Da, Ligand)
Zinc ion (65 Da, Ligand)
1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
Cytochrome b-c1 complex subunit 9 (8 kDa, Protein from Vigna radiata var. radiata)
Protoporphyrin ix containing fe (616 Da, Ligand)
Cytochrome c oxidase subunit 6a, mitochondrial (11 kDa, Protein from Vigna radiata var. radiata)
Cardiolipin (1 kDa, Ligand)
Cytochrome c oxidase subunit 5b-2, mitochondrial (16 kDa, Protein from Vigna radiata var. radiata)
Cytochrome b-c1 complex subunit rieske, mitochondrial (30 kDa, Protein from Vigna radiata var. radiata)

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EMD-10318

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Complex IV of the III2-IV5B1 respiratory supercomplex from S. cerevisiae after focused refinement

Release date: April 22, 2020
Resolution: 3.41 Å
EM Method: Single-particle

Hartley AM, Meunier B, Pinotsis N, Marechal A

PNAS (2020) 117 pp. 9329-9337 [ Pubmed: 32291341 DOI: doi:10.1073/pnas.1920612117 ]

Sample:

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EMD-10334

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Complex IV in the III2-IV2 mitochondrial respiratory supercomplex from S. cerevisiae (CIV(5B)-b)

Release date: April 22, 2020
Resolution: 3.0 Å
EM Method: Single-particle

Hartley AM, Meunier B, Pinotsis N, Marechal A

PNAS (2020) 117 pp. 9329-9337 [ Pubmed: 32291341 DOI: doi:10.1073/pnas.1920612117 ]

Sample:

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EMD-10335

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CIV1 of the III2-IV5B2 respiratory supercomplex from S. cerevisiae after focused refinement

Release date: April 22, 2020
Resolution: 2.8 Å
EM Method: Single-particle

Hartley AM, Meunier B, Pinotsis N, Marechal A

PNAS (2020) 117 pp. 9329-9337 [ Pubmed: 32291341 DOI: doi:10.1073/pnas.1920612117 ]

Sample:

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EMD-10340

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The III2-IV(5B)2 respiratory supercomplex from S. cerevisiae

Release date: April 22, 2020
Resolution: 2.8 Å
EM Method: Single-particle

Hartley AM, Meunier B, Pinotsis N, Marechal A

PNAS (2020) 117 pp. 9329-9337 [ Pubmed: 32291341 DOI: doi:10.1073/pnas.1920612117 ]

Sample:

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EMD-10375

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Complex IV in the III2-IV2 mitochondrial respiratory supercomplex from S. cerevisiae (CIV(5A)-a)

Release date: April 22, 2020
Resolution: 3.09 Å
EM Method: Single-particle

Hartley AM, Meunier B, Pinotsis N, Marechal A

PNAS (2020) 117 pp. 9329-9337 [ Pubmed: 32291341 DOI: doi:10.1073/pnas.1920612117 ]

Sample:

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EMD-10376

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Complex IV in the III2-IV2 mitochondrial respiratory supercomplex from S. cerevisiae (CIV(5A)-b)

Release date: April 22, 2020
Resolution: 3.24 Å
EM Method: Single-particle

Hartley AM, Meunier B, Pinotsis N, Marechal A

PNAS (2020) 117 pp. 9329-9337 [ Pubmed: 32291341 DOI: doi:10.1073/pnas.1920612117 ]

Sample:

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EMD-0262

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III2-IV2 mitochondrial respiratory supercomplex from S. cerevisiae

Release date: Dec. 26, 2018
Resolution: 3.31 Å
EM Method: Single-particle
Fitted PDBs: 6hu9
Q-score: 0.431

Hartley AM, Lukoyanova N, Zhang Y, Cabrera-Orefice A, Arnold S, Meunier B, Pinotsis N, Marechal A

Nat Struct Mol Biol (2019) 26 pp. 78-83 [ DOI: doi:10.1038/s41594-018-0172-z Pubmed: 30598554 ]

Sample:

Cox6 (Protein from Saccharomyces cerevisiae)
Cox13 (Protein from Saccharomyces cerevisiae)
Cytochrome b-c1 complex subunit 9 (Protein from Saccharomyces cerevisiae)
Cox12 (Protein from Saccharomyces cerevisiae)
Cytochrome b-c1 complex subunit 2, mitochondrial (Protein from Saccharomyces cerevisiae)
Cox26 (Protein from Saccharomyces cerevisiae)
Cox1 (Protein from Saccharomyces cerevisiae)
12-subunit cytochrome c oxidase with isoform cox5a (Complex)
Cytochrome c1, heme protein, mitochondrial (Protein from Saccharomyces cerevisiae)
Cytochrome b-c1 complex subunit 7 (Protein from Saccharomyces cerevisiae)
Cox9 (Protein from Saccharomyces cerevisiae)
Cytochrome b (Protein from Saccharomyces cerevisiae)
10-subunit yeast cytochrome bc1 (Complex from Saccharomyces cerevisiae)
Cytochrome b-c1 complex subunit 10 (Protein from Saccharomyces cerevisiae)
Iii2-iv2 mitochondrial respiratory supercomplex (Complex from Saccharomyces cerevisiae)
Cox7 (Protein from Saccharomyces cerevisiae)
Cox5a (Protein from Saccharomyces cerevisiae)
Cytochrome b-c1 complex subunit 1, mitochondrial (Protein from Saccharomyces cerevisiae)
Cytochrome b-c1 complex subunit rieske, mitochondrial (Protein from Saccharomyces cerevisiae)
Cytochrome b-c1 complex subunit 8 (Protein from Saccharomyces cerevisiae)
Cox4 (Protein from Saccharomyces cerevisiae)
Cox3 (Protein from Saccharomyces cerevisiae)
Cox8 (Protein from Saccharomyces cerevisiae)
Cox2 (Protein from Saccharomyces cerevisiae)
Cytochrome b-c1 complex subunit 6 (Protein from Saccharomyces cerevisiae)

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