Cryo-EM structure of Cas8-HNH system at full R-loop state
Resolution: 2.51 Å
EM Method: Single-particle
Fitted PDBs: 8z0k
Q-score: 0.551
Li X, Liu Y, Han J, Zhang L, Liu Z, Wang L, Zhang S, Zhang Q, Fu P, Yin H, Zhu H, Zhang H
EMBO J (2024) 43 pp. 4656-4667 [ Pubmed: 39251884 DOI: doi:10.1038/s44318-024-00229-8 ]
- Dna (37-mer) (11 kDa, DNA from Selenomonas sp.)
- Rna (69-mer) (22 kDa, RNA from Selenomonas sp.)
- Type i-f crispr-associated protein csy3 (37 kDa, Protein from Selenomonas sp.)
- Type i-f crispr-associated endoribonuclease cas6/csy4 (20 kDa, Protein from Selenomonas sp.)
- Dna (5'-d(p*gp*tp*gp*cp*gp*gp*a)-3') (2 kDa, DNA from Selenomonas sp.)
- Hnh endonuclease (39 kDa, Protein from Selenomonas sp.)
- Cryo-em structure of cas8-hnh system at full r-loop state (Complex from Selenomonas sp.)
- Hypothetical protein j6n51_11000 (28 kDa, Protein from Selenomonas sp.)
Cryo-EM structure of Cas8-HNH system at partial R-loop state
Resolution: 2.57 Å
EM Method: Single-particle
Fitted PDBs: 8z0l
Q-score: 0.549
Li X, Liu Y, Han J, Zhang L, Liu Z, Wang L, Zhang S, Zhang Q, Fu P, Yin H, Zhu H, Zhang H
EMBO J (2024) 43 pp. 4656-4667 [ Pubmed: 39251884 DOI: doi:10.1038/s44318-024-00229-8 ]
- Dna (32-mer) (9 kDa, DNA from Selenomonas sp.)
- Rna (69-mer) (22 kDa, RNA from Selenomonas sp.)
- Type i-f crispr-associated protein csy3 (37 kDa, Protein from Selenomonas sp.)
- Cryo-em structure of cas8-hnh system at partial r-loop state (Complex from Selenomonas sp.)
- Type i-f crispr-associated endoribonuclease cas6/csy4 (20 kDa, Protein from Selenomonas sp.)
- Dna (5'-d(p*gp*tp*gp*cp*gp*gp*a)-3') (2 kDa, DNA from Selenomonas sp.)
- Hnh endonuclease (39 kDa, Protein from Selenomonas sp.)
- Hypothetical protein j6n51_11000 (28 kDa, Protein from Selenomonas sp.)
Cas1-Cas2-dsDNA subregion in ICP1 Csy-DNA-Cas1-2/3 complex
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8k21
Q-score: 0.365
To Be Published
- Dna (5'-d(p*ap*gp*cp*ap*ap*tp*tp*tp*ap*ap*ap*tp*ap*gp*gp*gp*ap*ap*gp*ap*t)-3') (6 kDa, DNA from Vibrio phage ICP1 2004 A)
- Csy complex (Complex from Vibrio phage ICP1 2004 A)
- Hd cas3-type domain-containing protein (8 kDa, Protein from Vibrio phage ICP1 2004 A)
- Cas1 (33 kDa, Protein from Vibrio phage ICP1 2004 A)
- Dna (5'-d(*ap*tp*cp*tp*tp*cp*cp*cp*tp*ap*tp*tp*tp*ap*ap*ap*tp*tp*gp*cp*t)-3') (6 kDa, DNA from Vibrio phage ICP1 2004 A)
ICP1 Csy-dsDNA-Cas1-Cas2/3 complex (half form)
Resolution: 2.92 Å
EM Method: Single-particle
Fitted PDBs: 8k22
Q-score: 0.448
To Be Published
- Dna (31-mer) (9 kDa, DNA from Vibrio phage ICP1 2004 A)
- Csy complex (Complex from Vibrio phage ICP1 2004 A)
- Csy2 (27 kDa, Protein from Vibrio phage ICP1 2004 A)
- Hd cas3-type domain-containing protein (104 kDa, Protein from Vibrio phage ICP1 2004 A)
- Manganese (ii) ion (54 Da, Ligand)
- Csy3 (33 kDa, Protein from Vibrio phage ICP1 2004 A)
- Csy1 (20 kDa, Protein from Vibrio phage ICP1 2004 A)
- Rna (60-mer) (19 kDa, RNA from Vibrio phage ICP1 2004 A)
- Cas1 (33 kDa, Protein from Vibrio phage ICP1 2004 A)
- Csy4 (18 kDa, Protein from Vibrio phage ICP1 2004 A)
- Dna (5'-d(*ap*tp*cp*tp*tp*cp*cp*cp*tp*ap*tp*tp*tp*ap*ap*ap*tp*tp*gp*cp*t)-3') (6 kDa, DNA from Vibrio phage ICP1 2004 A)
- Dna (43-mer) (13 kDa, DNA from Vibrio phage ICP1 2004 A)
ICP1 Csy-dsDNA-Cas1-Cas2/3 complex (fully assembled form) composited structure with C1 symmetry
Resolution: 3.75 Å
EM Method: Single-particle
Fitted PDBs: 8k23
Q-score: 0.469
To Be Published
- Dna (31-mer) (9 kDa, DNA from Vibrio phage ICP1 2004 A)
- Csy complex (Complex from Vibrio phage ICP1 2004 A)
- Csy2 (27 kDa, Protein from Vibrio phage ICP1 2004 A)
- Csy1 (20 kDa, Protein from Vibrio phage ICP1 2004 A)
- Hd cas3-type domain-containing protein (104 kDa, Protein from Vibrio phage ICP1 2004 A)
- Csy3 (33 kDa, Protein from Vibrio phage ICP1 2004 A)
- Manganese (ii) ion (54 Da, Ligand)
- Cas1 (34 kDa, Protein from Vibrio phage ICP1 2004 A)
- Rna (60-mer) (19 kDa, RNA from Vibrio phage ICP1 2004 A)
- Csy4 (18 kDa, Protein from Vibrio phage ICP1 2004 A)
- Dna (5'-d(*ap*tp*cp*tp*tp*cp*cp*cp*tp*ap*tp*tp*tp*ap*ap*ap*tp*tp*gp*cp*t)-3') (6 kDa, DNA from Vibrio phage ICP1 2004 A)
- Dna (43-mer) (13 kDa, DNA from Vibrio phage ICP1 2004 A)
ICP1 Csy-dsDNA-Cas1-Cas2/3 complex (fully assembled form), C2 symmetry
Resolution: 3.72 Å
EM Method: Single-particle
Fitted PDBs: 8k24
Q-score: 0.464
To Be Published
- Dna (31-mer) (9 kDa, DNA from Vibrio phage ICP1 2004 A)
- Csy complex (Complex from Vibrio phage ICP1 2004 A)
- Csy2 (27 kDa, Protein from Vibrio phage ICP1 2004 A)
- Hd cas3-type domain-containing protein (104 kDa, Protein from Vibrio phage ICP1 2004 A)
- Manganese (ii) ion (54 Da, Ligand)
- Csy3 (33 kDa, Protein from Vibrio phage ICP1 2004 A)
- Cas1 (34 kDa, Protein from Vibrio phage ICP1 2004 A)
- Rna (60-mer) (19 kDa, RNA from Vibrio phage ICP1 2004 A)
- Dna (5'-d(*ap*tp*cp*tp*tp*cp*cp*cp*tp*ap*tp*tp*tp*ap*ap*ap*tp*tp*gp*cp*t)-3') (6 kDa, DNA from Vibrio phage ICP1 2004 A)
- Csy4 (18 kDa, Protein from Vibrio phage ICP1 2004 A)
- Csy1 (20 kDa, Protein from Vibrio phage ICP1 2004 A)
- Dna (43-mer) (13 kDa, DNA from Vibrio phage ICP1 2004 A)
Structure of Cas1-Cas2-dsDNA complex
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8k25
Q-score: 0.29
To Be Published
- Csy complex (Complex from Vibrio phage ICP1 2004 A)
- Dna (5'-d(p*cp*ap*ap*tp*tp*tp*ap*ap*ap*tp*ap*gp*gp*gp*ap*ap*g)-3') (5 kDa, DNA from Vibrio phage ICP1 2004 A)
- Cas1 (33 kDa, Protein from Vibrio phage ICP1 2004 A)
- Hd cas3-type domain-containing protein (8 kDa, Protein from Vibrio phage ICP1 2004 A)
- Dna (5'-d(p*tp*tp*cp*cp*cp*tp*ap*tp*tp*tp*ap*ap*ap*tp*tp*gp*c)-3') (5 kDa, DNA from Vibrio phage ICP1 2004 A)