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sample_name:"Csy" AND microscope_name:"FEI TITAN KRIOS"
Cas1-Cas2-dsDNA subregion in ICP1 Csy-DNA-Cas1-2/3 complex
Release date: July 17, 2024
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8k21
Q-score: 0.365
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8k21
Q-score: 0.365
To Be Published
Sample:
- Hd cas3-type domain-containing protein (8 kDa, Protein from Vibrio phage ICP1 2004 A)
- Dna (5'-d(*ap*tp*cp*tp*tp*cp*cp*cp*tp*ap*tp*tp*tp*ap*ap*ap*tp*tp*gp*cp*t)-3') (6 kDa, DNA from Vibrio phage ICP1 2004 A)
- Csy complex (Complex from Vibrio phage ICP1 2004 A)
- Dna (5'-d(p*ap*gp*cp*ap*ap*tp*tp*tp*ap*ap*ap*tp*ap*gp*gp*gp*ap*ap*gp*ap*t)-3') (6 kDa, DNA from Vibrio phage ICP1 2004 A)
- Cas1 (33 kDa, Protein from Vibrio phage ICP1 2004 A)
ICP1 Csy-dsDNA-Cas1-Cas2/3 complex (half form)
Release date: July 17, 2024
Resolution: 2.92 Å
EM Method: Single-particle
Fitted PDBs: 8k22
Q-score: 0.448
Resolution: 2.92 Å
EM Method: Single-particle
Fitted PDBs: 8k22
Q-score: 0.448
To Be Published
Sample:
- Csy4 (18 kDa, Protein from Vibrio phage ICP1 2004 A)
- Dna (5'-d(*ap*tp*cp*tp*tp*cp*cp*cp*tp*ap*tp*tp*tp*ap*ap*ap*tp*tp*gp*cp*t)-3') (6 kDa, DNA from Vibrio phage ICP1 2004 A)
- Csy2 (27 kDa, Protein from Vibrio phage ICP1 2004 A)
- Csy1 (20 kDa, Protein from Vibrio phage ICP1 2004 A)
- Csy complex (Complex from Vibrio phage ICP1 2004 A)
- Rna (60-mer) (19 kDa, RNA from Vibrio phage ICP1 2004 A)
- Cas1 (33 kDa, Protein from Vibrio phage ICP1 2004 A)
- Dna (43-mer) (13 kDa, DNA from Vibrio phage ICP1 2004 A)
- Dna (31-mer) (9 kDa, DNA from Vibrio phage ICP1 2004 A)
- Manganese (ii) ion (54 Da, Ligand)
- Csy3 (33 kDa, Protein from Vibrio phage ICP1 2004 A)
- Hd cas3-type domain-containing protein (104 kDa, Protein from Vibrio phage ICP1 2004 A)
ICP1 Csy-dsDNA-Cas1-Cas2/3 complex (fully assembled form) composited structure with C1 symmetry
Release date: July 17, 2024
Resolution: 3.75 Å
EM Method: Single-particle
Fitted PDBs: 8k23
Q-score: 0.469
Resolution: 3.75 Å
EM Method: Single-particle
Fitted PDBs: 8k23
Q-score: 0.469
To Be Published
Sample:
- Csy4 (18 kDa, Protein from Vibrio phage ICP1 2004 A)
- Dna (5'-d(*ap*tp*cp*tp*tp*cp*cp*cp*tp*ap*tp*tp*tp*ap*ap*ap*tp*tp*gp*cp*t)-3') (6 kDa, DNA from Vibrio phage ICP1 2004 A)
- Csy2 (27 kDa, Protein from Vibrio phage ICP1 2004 A)
- Csy1 (20 kDa, Protein from Vibrio phage ICP1 2004 A)
- Csy complex (Complex from Vibrio phage ICP1 2004 A)
- Rna (60-mer) (19 kDa, RNA from Vibrio phage ICP1 2004 A)
- Cas1 (34 kDa, Protein from Vibrio phage ICP1 2004 A)
- Dna (43-mer) (13 kDa, DNA from Vibrio phage ICP1 2004 A)
- Dna (31-mer) (9 kDa, DNA from Vibrio phage ICP1 2004 A)
- Manganese (ii) ion (54 Da, Ligand)
- Csy3 (33 kDa, Protein from Vibrio phage ICP1 2004 A)
- Hd cas3-type domain-containing protein (104 kDa, Protein from Vibrio phage ICP1 2004 A)
ICP1 Csy-dsDNA-Cas1-Cas2/3 complex (fully assembled form), C2 symmetry
Release date: July 17, 2024
Resolution: 3.72 Å
EM Method: Single-particle
Fitted PDBs: 8k24
Q-score: 0.464
Resolution: 3.72 Å
EM Method: Single-particle
Fitted PDBs: 8k24
Q-score: 0.464
To Be Published
Sample:
- Csy4 (18 kDa, Protein from Vibrio phage ICP1 2004 A)
- Dna (5'-d(*ap*tp*cp*tp*tp*cp*cp*cp*tp*ap*tp*tp*tp*ap*ap*ap*tp*tp*gp*cp*t)-3') (6 kDa, DNA from Vibrio phage ICP1 2004 A)
- Csy2 (27 kDa, Protein from Vibrio phage ICP1 2004 A)
- Csy complex (Complex from Vibrio phage ICP1 2004 A)
- Csy1 (20 kDa, Protein from Vibrio phage ICP1 2004 A)
- Rna (60-mer) (19 kDa, RNA from Vibrio phage ICP1 2004 A)
- Cas1 (34 kDa, Protein from Vibrio phage ICP1 2004 A)
- Dna (43-mer) (13 kDa, DNA from Vibrio phage ICP1 2004 A)
- Dna (31-mer) (9 kDa, DNA from Vibrio phage ICP1 2004 A)
- Manganese (ii) ion (54 Da, Ligand)
- Csy3 (33 kDa, Protein from Vibrio phage ICP1 2004 A)
- Hd cas3-type domain-containing protein (104 kDa, Protein from Vibrio phage ICP1 2004 A)
Structure of Cas1-Cas2-dsDNA complex
Release date: July 17, 2024
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8k25
Q-score: 0.29
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8k25
Q-score: 0.29
To Be Published
Sample:
- Dna (5'-d(p*tp*tp*cp*cp*cp*tp*ap*tp*tp*tp*ap*ap*ap*tp*tp*gp*c)-3') (5 kDa, DNA from Vibrio phage ICP1 2004 A)
- Hd cas3-type domain-containing protein (8 kDa, Protein from Vibrio phage ICP1 2004 A)
- Csy complex (Complex from Vibrio phage ICP1 2004 A)
- Dna (5'-d(p*cp*ap*ap*tp*tp*tp*ap*ap*ap*tp*ap*gp*gp*gp*ap*ap*g)-3') (5 kDa, DNA from Vibrio phage ICP1 2004 A)
- Cas1 (33 kDa, Protein from Vibrio phage ICP1 2004 A)
Structure of Cas1-Cas2 complex
Release date: July 17, 2024
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8k26
Q-score: 0.224
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8k26
Q-score: 0.224
To Be Published
Sample:
- Hd cas3-type domain-containing protein (9 kDa, Protein from Vibrio phage ICP1 2004 A)
- Cas1 (33 kDa, Protein from Vibrio phage ICP1 2004 A)
- Csy complex (Complex from Vibrio phage ICP1 2004 A)
ICP1 Csy-dsDNA complex (partial duplex)
Release date: July 17, 2024
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8k27
Q-score: 0.46
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8k27
Q-score: 0.46
To Be Published
Sample:
- Csy4 (18 kDa, Protein from Vibrio phage ICP1 2004 A)
- Csy2 (27 kDa, Protein from Vibrio phage ICP1 2004 A)
- Dna (49-mer) (15 kDa, DNA from Vibrio phage ICP1 2004 A)
- Csy complex (Complex from Vibrio phage ICP1 2004 A)
- Dna (25-mer) (7 kDa, DNA from Vibrio phage ICP1 2004 A)
- Csy1 (20 kDa, Protein from Vibrio phage ICP1 2004 A)
- Rna (60-mer) (19 kDa, RNA from Vibrio phage ICP1 2004 A)
- Csy3 (33 kDa, Protein from Vibrio phage ICP1 2004 A)