CIII2/CIV respiratory supercomplex from Saccharomyces cerevisiae
Resolution: 3.17 Å
EM Method: Single-particle
Fitted PDBs: 6ymx
Q-score: 0.495
Berndtsson J, Aufschnaiter A, Rathore S, Marin-Buera L, Dawitz H, Diessl J, Kohler V, Barrientos A, Buttner S, Fontanesi F, Ott M
EMBO Rep (2020) 21 pp. e51015-e51015 [ DOI: doi:10.15252/embr.202051015 Pubmed: 33016568 ]
- Cytochrome b-c1 complex subunit 10, mitochondrial (5 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- (2r)-3-{[(s)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl octadecanoate (691 Da, Ligand)
- (5s,11r)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-4,6,10,12,16-pentaoxa-5,11-diphosphaoctadec-1-yl pentadecanoate (634 Da, Ligand)
- Phosphatidylethanolamine (734 Da, Ligand)
- (1r)-2-(phosphonooxy)-1-[(tridecanoyloxy)methyl]ethyl pentadecanoate (592 Da, Ligand)
- Cytochrome c oxidase subunit 26, mitochondrial (4 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Cytochrome b-c1 complex subunit 10, mitochondrial (4 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Cytochrome b-c1 complex subunit 1, mitochondrial (47 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Respiratroy supercopmlex ciii2/civ (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Cytochrome b-c1 complex subunit 2, mitochondrial (38 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Cytochrome c oxidase subunit 4, mitochondrial (12 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dinuclear copper ion (127 Da, Ligand)
- Cytochrome c oxidase subunit 2 (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Cytochrome c oxidase subunit 9, mitochondrial (6 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 1,2-diacyl-sn-glycero-3-phoshocholine (734 Da, Ligand)
- Cytochrome b-c1 complex subunit 6, mitochondrial (8 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Cytochrome b-c1 complex subunit 9, mitochondrial (6 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Cytochrome b-c1 complex subunit 7, mitochondrial (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Cytochrome b-c1 complex subunit 8, mitochondrial (10 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Cytochrome c oxidase subunit 1 (58 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Cytochrome c1, heme protein, mitochondrial (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Cytochrome c oxidase subunit 6, mitochondrial (11 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Cytochrome c oxidase subunit 7, mitochondrial (6 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Copper (ii) ion (63 Da, Ligand)
- (1r)-2-(dodecanoyloxy)-1-[(phosphonooxy)methyl]ethyl tetradecanoate (564 Da, Ligand)
- Heme-a (852 Da, Ligand)
- 5-(3,7,11,15,19,23-hexamethyl-tetracosa-2,6,10,14,18,22-hexaenyl)-2,3-dimethoxy-6-methyl-benzene-1,4-diol (592 Da, Ligand)
- Cytochrome c oxidase subunit 5a, mitochondrial (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Cytochrome c oxidase subunit 3 (30 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Cytochrome c oxidase subunit 13, mitochondrial (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Cytochrome b (43 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Cytochrome b-c1 complex subunit 6, mitochondrial (8 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Cytochrome b-c1 complex subunit 9, mitochondrial (6 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- (1r)-2-{[(s)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(heptanoyloxy)methyl]ethyl octadecanoate (593 Da, Ligand)
- (2r,5s,11r,14r)-5,8,11-trihydroxy-2-(nonanoyloxy)-5,11-dioxido-16-oxo-14-[(propanoyloxy)methyl]-4,6,10,12,15-pentaoxa-5,11-diphosphanonadec-1-yl undecanoate (834 Da, Ligand)
- Cytochrome b-c1 complex subunit rieske, mitochondrial (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Cytochrome c oxidase subunit 12, mitochondrial (9 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Cytochrome c oxidase subunit 8, mitochondrial (5 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
Saccharomyces cerevisiae respiratory supercomplex III2IV
Resolution: 3.23 Å
EM Method: Single-particle
Fitted PDBs: 6giq
Q-score: 0.444
Rathore S, Berndtsson J, Marin-Buera L, Conrad J, Carroni M, Brzezinski P, Ott M
Nat Struct Mol Biol (2019) 26 pp. 50-57 [ DOI: doi:10.1038/s41594-018-0169-7 Pubmed: 30598556 ]
- (2r)-3-{[(s)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl octadecanoate (691 Da, Ligand)
- (5s,11r)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-4,6,10,12,16-pentaoxa-5,11-diphosphaoctadec-1-yl pentadecanoate (634 Da, Ligand)
- Saccharomyces cerevisiae complex iv (Complex from Saccharomyces cerevisiae W303)
- Saccharomyces cerevisiae supercomplex (iii2iv) (Complex from Saccharomyces cerevisiae W303)
- Qcr6 isoform 1 (17 kDa, Protein from Saccharomyces cerevisiae)
- (1r)-2-(phosphonooxy)-1-[(tridecanoyloxy)methyl]ethyl pentadecanoate (592 Da, Ligand)
- Cytochrome b-c1 complex subunit 2, mitochondrial (40 kDa, Protein from Saccharomyces cerevisiae)
- Bj4_g0018620.mrna.1.cds.1 (17 kDa, Protein from Saccharomyces cerevisiae)
- Cytochrome b-c1 complex subunit rieske, mitochondrial (23 kDa, Protein from Saccharomyces cerevisiae)
- Bj4_g0024040.mrna.1.cds.1 (17 kDa, Protein from Saccharomyces cerevisiae)
- Complex iii subunit 7 (14 kDa, Protein from Saccharomyces cerevisiae)
- Hlj1_g0021680.mrna.1.cds.1 (7 kDa, Protein from Saccharomyces cerevisiae)
- Cytochrome b (43 kDa, Protein from Saccharomyces cerevisiae)
- Unknown cox subunit (2 kDa, Protein from Saccharomyces cerevisiae)
- Heme c (618 Da, Ligand)
- Bj4_g0035470.mrna.1.cds.1 (9 kDa, Protein from Saccharomyces cerevisiae)
- Bj4_g0049990.mrna.1.cds.1 (34 kDa, Protein from Saccharomyces cerevisiae)
- Dinuclear copper ion (127 Da, Ligand)
- Bj4_g0043230.mrna.1.cds.1 (6 kDa, Protein from Saccharomyces cerevisiae)
- 1,2-diacyl-sn-glycero-3-phoshocholine (734 Da, Ligand)
- Bj4_g0028260.mrna.1.cds.1 (10 kDa, Protein from Saccharomyces cerevisiae)
- Cytochrome c oxidase subunit 2 (28 kDa, Protein from Saccharomyces cerevisiae)
- Saccharomyces cerevisiae complex iii (Complex from Saccharomyces cerevisiae W303)
- Cytochrome c oxidase subunit (15 kDa, Protein from Saccharomyces cerevisiae)
- Cytochrome c oxidase subunit 1 (58 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Bj4_g0023510.mrna.1.cds.1 (8 kDa, Protein from Saccharomyces cerevisiae)
- Copper (ii) ion (63 Da, Ligand)
- Bj4_g0001550.mrna.1.cds.1 (50 kDa, Protein from Saccharomyces cerevisiae)
- (1r)-2-(dodecanoyloxy)-1-[(phosphonooxy)methyl]ethyl tetradecanoate (564 Da, Ligand)
- Cytochrome c oxidase polypeptide viia (6 kDa, Protein from Saccharomyces cerevisiae)
- Bj4_g0038800.mrna.1.cds.1 (8 kDa, Protein from Saccharomyces cerevisiae)
- Bj4_g0046460.mrna.1.cds.1 (17 kDa, Protein from Saccharomyces cerevisiae)
- 5-(3,7,11,15,19,23-hexamethyl-tetracosa-2,6,10,14,18,22-hexaenyl)-2,3-dimethoxy-6-methyl-benzene-1,4-diol (592 Da, Ligand)
- Heme-a (852 Da, Ligand)
- (1r)-2-{[(s)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(heptanoyloxy)methyl]ethyl octadecanoate (593 Da, Ligand)
- (2r,5s,11r,14r)-5,8,11-trihydroxy-2-(nonanoyloxy)-5,11-dioxido-16-oxo-14-[(propanoyloxy)methyl]-4,6,10,12,15-pentaoxa-5,11-diphosphanonadec-1-yl undecanoate (834 Da, Ligand)
- Cytochrome c oxidase subunit 3 (30 kDa, Protein from Saccharomyces cerevisiae)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)