S. cerevisiae nexus-sCMGE after DNA replication initiation
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 8p5e
Q-score: 0.39
Henrikus SS, Gross MH, Willhoft O, Puhringer T, Lewis JS, McClure AW, Greiwe JF, Palm G, Nans A, Diffley JFX, Costa A
Nat Struct Mol Biol (2024) 31 pp. 1265-1276 [ DOI: doi:10.1038/s41594-024-01280-z Pubmed: 38760633 ]
- Dna polymerase epsilon subunit b (78 kDa, Protein from Saccharomyces cerevisiae)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Dna replication complex gins containing psf1, psf2, psf3 and sld5 (Complex from Saccharomyces cerevisiae)
- Dna (19-mer) (5 kDa, DNA from synthetic construct)
- Zinc ion (65 Da, Ligand)
- Dna replication licensing factors mcm2-7 (Complex from Saccharomyces cerevisiae)
- Dna replication licensing factor mcm2 (98 kDa, Protein from Saccharomyces cerevisiae)
- Dna replication licensing factor mcm6 (113 kDa, Protein from Saccharomyces cerevisiae)
- Minichromosome maintenance protein 5 (86 kDa, Protein from Saccharomyces cerevisiae)
- Dna replication complex gins protein psf1 (24 kDa, Protein from Saccharomyces cerevisiae)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Dna (7-mer) (2 kDa, DNA from synthetic construct)
- Dna replication complex gins protein sld5 (33 kDa, Protein from Saccharomyces cerevisiae)
- Dna polymerase epsilon contains catalytic subunit a and non-catalytic subunit b (Complex from Saccharomyces cerevisiae)
- Dna replication licensing factor mcm3 (111 kDa, Protein from Saccharomyces cerevisiae)
- Dna replication licensing factor mcm7 (95 kDa, Protein from Saccharomyces cerevisiae)
- Dna polymerase epsilon catalytic subunit a (255 kDa, Protein from Saccharomyces cerevisiae)
- Dna replication complex gins protein psf2 (25 kDa, Protein from Saccharomyces cerevisiae)
- Dna replication licensing factor mcm4 (105 kDa, Protein from Saccharomyces cerevisiae)
- Cell division control protein 45 (75 kDa, Protein from Saccharomyces cerevisiae)
- Dna replication complex gins protein psf3 (25 kDa, Protein from Saccharomyces cerevisiae)
- Dna (Complex from synthetic construct)
- Cdc45 (Complex from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- Complex of mcm2-7, cdc45, gins (psf1-3, sld5) dna polymerase epsilon (subunit a and b), 19-mer dna molecule with complementary 7-mer dna molecule (Complex from Saccharomyces cerevisiae)
Cryo-EM structure of Ty3 retrotransposon targeting a TFIIIB-bound tRNA gene
Resolution: 3.98 Å
EM Method: Single-particle
Fitted PDBs: 7q5b
Q-score: 0.305
Abascal-Palacios G, Jochem L, Pla-Prats C, Beuron F, Vannini A
Nat Commun (2021) 12 pp. 6992-6992 [ Pubmed: 34848735 DOI: doi:10.1038/s41467-021-27338-w ]
- Dna (34-mer) (10 kDa, DNA from Saccharomyces cerevisiae S288C)
- Tfiiib transcription factor (Complex from Saccharomyces cerevisiae S288C)
- Ty3 retrotransposon engaged with tfiiib transcription factor and trna promoter (Complex)
- Dna (9-mer) (2 kDa, DNA from Saccharomyces cerevisiae S288C)
- Dna (56-mer) (17 kDa, DNA from Saccharomyces cerevisiae S288C)
- Dna (19-mer) (5 kDa, DNA from Saccharomyces cerevisiae S288C)
- Transposon ty3-g gag-pol polyprotein (178 kDa, Protein from Saccharomyces cerevisiae S288C)
- Transcription factor tfiiib component b'' (67 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna (31-mer) (9 kDa, DNA from Saccharomyces cerevisiae S288C)
- Tata-box-binding protein (27 kDa, Protein from Saccharomyces cerevisiae S288C)
- Transcription factor iiib 70 kda subunit (67 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna (Complex from Saccharomyces cerevisiae S288C)