HSV-1 DNA polymerase-processivity factor complex in exonuclease state with 1-bp DNA mismatch
Resolution: 2.12 Å
EM Method: Single-particle
Fitted PDBs: 9enp
Q-score: 0.588
Gustavsson E, Grunewald K, Elias P, Hallberg BM
Nucleic Acids Res (2024) 52 pp. 7292-7304 [ DOI: doi:10.1093/nar/gkae374 Pubmed: 38806233 ]
- Calcium ion (40 Da, Ligand)
- Dna polymerase catalytic subunit (136 kDa, Protein from Human alphaherpesvirus 1 strain KOS)
- Dna polymerase-processivity factor (Complex from Human alphaherpesvirus 1 strain KOS)
- Dna (67-mer) (20 kDa, DNA from synthetic construct)
- Dna (Complex from synthetic construct)
- Dna (46-mer) (13 kDa, DNA from synthetic construct)
- Water (18 Da, Ligand)
- Dna polymerase processivity factor (51 kDa, Protein from Human alphaherpesvirus 1 strain KOS)
- Hsv-1 dna polymerase-processivity factor complex in exonuclease state with 1-bp dna mismatch (Complex)
Resolution: 2.12 Å
EM Method: Single-particle
Fitted PDBs: 9enq
Q-score: 0.677
Gustavsson E, Grunewald K, Elias P, Hallberg BM
Nucleic Acids Res (2024) 52 pp. 7292-7304 [ DOI: doi:10.1093/nar/gkae374 Pubmed: 38806233 ]
- Calcium ion (40 Da, Ligand)
- Dna polymerase catalytic subunit (136 kDa, Protein from Human alphaherpesvirus 1 strain KOS)
- Dna polymerase-processivity factor (Complex from Human alphaherpesvirus 1 strain KOS)
- Dna (67-mer) (20 kDa, DNA from synthetic construct)
- Dna (Complex from synthetic construct)
- Dna (46-mer) (13 kDa, DNA from synthetic construct)
- Water (18 Da, Ligand)
- Hsv-1 dna polymerase-processivity factor complex in exonuclease state with 1-bp dna mismatch (Complex)
HSV-1 DNA polymerase-processivity factor complex in halted elongation state
Resolution: 2.46 Å
EM Method: Single-particle
Fitted PDBs: 8oj7
Q-score: 0.583
Gustavsson E, Grunewald K, Elias P, Hallberg BM
Nucleic Acids Res (2024) 52 pp. 7292-7304 [ DOI: doi:10.1093/nar/gkae374 Pubmed: 38806233 ]
- Dna (53-mer) (16 kDa, DNA from synthetic construct)
- Dna polymerase catalytic subunit (136 kDa, Protein from Human alphaherpesvirus 1 strain KOS)
- 2'-deoxyadenosine 5'-triphosphate (491 Da, Ligand)
- Dna (67-mer) (20 kDa, DNA from synthetic construct)
- Magnesium ion (24 Da, Ligand)
- Hsv-1 dna polymerase-processivity factor complex in halted elongation state (Complex from Human alphaherpesvirus 1 strain KOS)
- Dna polymerase processivity factor (51 kDa, Protein from Human alphaherpesvirus 1 strain KOS)
Q21 transcription antitermination complex: loading complex
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6p18
Q-score: 0.447
PNAS (2019) 116 pp. 18384-18390 [ DOI: doi:10.1073/pnas.1909801116 Pubmed: 31455742 ]
- Dna (67-mer) fragment carrying phage-21 pr' promoter and pause element, template strand (20 kDa, DNA from Phage 21)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Escherichia coli (strain K12))
- Q21-loading complex (Complex from Escherichia coli)
- Dna (67-mer) fragment carrying phage-21 pr' promoter and pause element, nontemplate strand (20 kDa, DNA from Phage 21)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli (strain K12))
- Dna-directed rna polymerase subunit omega (10 kDa, Protein from Escherichia coli (strain K12))
- Q protein (18 kDa, Protein from Phage 21)
- Rna (5'-r(p*up*gp*gp*gp*ap*gp*ap*gp*gp*up*a)-3') (3 kDa, RNA from Escherichia coli)
- Dna-directed rna polymerase subunit beta' (158 kDa, Protein from Escherichia coli (strain K12))
- Rna polymerase sigma factor rpod (71 kDa, Protein from Escherichia coli (strain K12))
- Magnesium ion (24 Da, Ligand)