Mouse mammary tumor virus strand transfer complex intasome
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7usf
Q-score: 0.403
Jozwik IK, Li W, Zhang DW, Wong D, Grawenhoff J, Ballandras-Colas A, Aiyer S, Cherepanov P, Engelman AN, Lyumkis D
Nucleic Acids Res (2022) 50 pp. 8898-8918 [ DOI: doi:10.1093/nar/gkac644 Pubmed: 35947647 ]
- Mmtv strand transfer complex intasome (300 kDa, Complex from Mouse mammary tumor virus)
- Integrase (35 kDa, Protein from Mouse mammary tumor virus)
- Zinc ion (65 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Vdna-tdna strand (transferred) (12 kDa, DNA from Mouse mammary tumor virus)
- Vdna strand (non-transferred) (9 kDa, DNA from Mouse mammary tumor virus)
- Tdna strand (4 kDa, DNA from Mouse mammary tumor virus)
Higher-order assembly of multiple MMTV strand transfer complex intasomes
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7ut1
Q-score: 0.39
Jozwik IK, Li W, Zhang DW, Wong D, Grawenhoff J, Ballandras-Colas A, Aiyer S, Cherepanov P, Engelman AN, Lyumkis D
Nucleic Acids Res (2022) 50 pp. 8898-8918 [ DOI: doi:10.1093/nar/gkac644 Pubmed: 35947647 ]
- Integrase (35 kDa, Protein from Mouse mammary tumor virus)
- Zinc ion (65 Da, Ligand)
- Vdna-tdna strand (transferred) (12 kDa, DNA from Mouse mammary tumor virus)
- Vdna strand (non-transferred) (6 kDa, DNA from Mouse mammary tumor virus)
- Higher-order assembly of multiple mmtv strand transfer complex intasomes (600 kDa, Complex from Mouse mammary tumor virus)
- Tdna strand (4 kDa, DNA from Mouse mammary tumor virus)
Transcription termination intermediate complex 3 delta NusG
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7adc
Q-score: 0.259
Said N, Hilal T, Sunday ND, Khatri A, Burger J, Mielke T, Belogurov GA, Loll B, Sen R, Artsimovitch I, Wahl MC
Science (2021) 371 [ DOI: doi:10.1126/science.abd1673 Pubmed: 33243850 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Transcription termination intermediate complex 3 delta nusg (Complex from Escherichia coli)
- Beryllium trifluoride ion (66 Da, Ligand)
- Ntdna, tdna and rut rna (Complex from synthetic construct)
- Transcription termination factor rho (47 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli)
- Ntdna (15 kDa, DNA from synthetic construct)
- Rut rna (31 kDa, RNA from synthetic construct)
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit omega (10 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Transcription termination intermediate complex 3 delta nusg (800 kDa, Complex)
- Tdna (15 kDa, DNA from synthetic construct)
- Dna-directed rna polymerase subunit beta' (156 kDa, Protein from Escherichia coli)
- Water (18 Da, Ligand)
- Transcription termination/antitermination protein nusa (55 kDa, Protein from Escherichia coli)
Transcription termination intermediate complex IIIa
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 7add
Q-score: 0.217
Said N, Hilal T, Sunday ND, Khatri A, Burger J, Mielke T, Belogurov GA, Loll B, Sen R, Artsimovitch I, Wahl MC
Science (2021) 371 [ DOI: doi:10.1126/science.abd1673 Pubmed: 33243850 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Beryllium trifluoride ion (66 Da, Ligand)
- Ntdna, tdna and rut rna (Complex from synthetic construct)
- Transcription termination factor rho (47 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli)
- Ntdna (15 kDa, DNA from synthetic construct)
- Transcription termination intermediate complex iiia (800 kDa, Complex)
- Rut rna (31 kDa, RNA from synthetic construct)
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit omega (10 kDa, Protein from Escherichia coli)
- Transcription termination intermediate complex iiia (Complex from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Tdna (15 kDa, DNA from synthetic construct)
- Dna-directed rna polymerase subunit beta' (156 kDa, Protein from Escherichia coli)
- Water (18 Da, Ligand)
- Transcription termination/antitermination protein nusa (55 kDa, Protein from Escherichia coli)
Transcription termination complex IVa
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7ade
Q-score: 0.235
Said N, Hilal T, Sunday ND, Khatri A, Burger J, Mielke T, Belogurov GA, Loll B, Sen R, Artsimovitch I, Wahl MC
Science (2021) 371 [ DOI: doi:10.1126/science.abd1673 Pubmed: 33243850 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Tdna (15 kDa, DNA from synthetic construct)
- Zinc ion (65 Da, Ligand)
- Water (18 Da, Ligand)
- Transcription termination complex iva (800 kDa, Complex)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli)
- Transcription termination factor rho (47 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Escherichia coli)
- Ntdna (15 kDa, DNA from synthetic construct)
- Dna-directed rna polymerase subunit omega (10 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Beryllium trifluoride ion (66 Da, Ligand)
- Transcription termination/antitermination protein nusa (55 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit beta' (156 kDa, Protein from Escherichia coli)
- Transcription termination complex iva (Complex from Escherichia coli)
- Rut rna (31 kDa, RNA from synthetic construct)
- Ntdna, tdna and rut rna (Complex from synthetic construct)
Cryo-EM structure of piggyBac transposase strand transfer complex (STC)
Resolution: 3.47 Å
EM Method: Single-particle
Fitted PDBs: 6x67
Q-score: 0.435
Chen Q, Luo W, Veach RA, Hickman AB, Wilson MH, Dyda F
Nat Commun (2020) 11 pp. 3446-3446 [ DOI: doi:10.1038/s41467-020-17128-1 ]
- Dna (47-mer) (14 kDa, DNA from Trichoplusia ni)
- Zinc ion (65 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Dna (tdna) (2 kDa, DNA from Trichoplusia ni)
- Dna (37-mer) (11 kDa, DNA from Trichoplusia ni)
- Piggybac transposase strand transfer complex (Complex from Trichoplusia ni)
- Transposase (68 kDa, Protein from Trichoplusia ni)
Cryo-EM reconstruction of the maedi-visna virus (MVV) strand transfer complex
Resolution: 8.2 Å
EM Method: Single-particle
Fitted PDBs: 5m0r
Q-score: 0.098
Ballandras-Colas A, Maskell DP, Serrao E, Locke J, Swuec P, Jonsson SR, Kotecha A, Cook NJ, Pye VE, Taylor IA, Andresdottir V, Engelman AN, Costa A, Cherepanov P
Science (2017) 355 pp. 93-95 [ Pubmed: 28059770 DOI: doi:10.1126/science.aah7002 ]
- Nucleic acid (Complex from Visna lentivirus (strain 1514))
- Tdna (7 kDa, DNA from synthetic construct)
- Integrase (32 kDa, Protein from Maedi visna virus (strain KV1772))
- Vdna-tdna, transferred strand, joined to a model tdna (15 kDa, DNA from Visna lentivirus (strain 1514))
- Mvv strand transfer complex (Complex)
- Intergrase (Complex from Maedi visna virus (strain KV1772))
- Vdna, non-transfered strand (6 kDa, DNA from Visna lentivirus (strain 1514))
- Nucleic acid (Complex from synthetic construct)