Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6n7i
Q-score: 0.483
Gao Y, Cui Y, Fox T, Lin S, Wang H, de Val N, Zhou ZH, Yang W
Science (2019) 363 [ Pubmed: 30679383 DOI: doi:10.1126/science.aav7003 ]
- Water (18 Da, Ligand)
- Dna (25-mer) (7 kDa, DNA from Enterobacteria phage T7)
- Bacteriophage t7 gene product 4 (gp4) helicase primase dna complex with five helicase subunits ordered (Complex from Enterobacteria phage T7)
- Magnesium ion (24 Da, Ligand)
- Thymidine-5'-triphosphate (482 Da, Ligand)
- Dna primase/helicase (62 kDa, Protein from Enterobacteria phage T7)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6n7n
Q-score: 0.421
Gao Y, Cui Y, Fox T, Lin S, Wang H, de Val N, Zhou ZH, Yang W
Science (2019) 363 [ Pubmed: 30679383 DOI: doi:10.1126/science.aav7003 ]
- Magnesium ion (24 Da, Ligand)
- Bacteriophage t7 gene product 4 (gp4) helicase primase dna complex i (Complex from Enterobacteria phage T7)
- Thymidine-5'-triphosphate (482 Da, Ligand)
- Dna primase/helicase (62 kDa, Protein from Enterobacteria phage T7)
- Dna (5'-d(p*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*t)-3') (4 kDa, DNA from Enterobacteria phage T7)
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 6n7s
Q-score: 0.239
Gao Y, Cui Y, Fox T, Lin S, Wang H, de Val N, Zhou ZH, Yang W
Science (2019) 363 [ Pubmed: 30679383 DOI: doi:10.1126/science.aav7003 ]
- Dna (25-mer) (7 kDa, DNA from Enterobacteria phage T7)
- Magnesium ion (24 Da, Ligand)
- Bacteriophage t7 gene product 4 (gp4) helicase primase dna complex ii (Complex from Enterobacteria phage T7)
- Thymidine-5'-triphosphate (482 Da, Ligand)
- Dna primase/helicase (62 kDa, Protein from Enterobacteria phage T7)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6n7t
Q-score: 0.386
Gao Y, Cui Y, Fox T, Lin S, Wang H, de Val N, Zhou ZH, Yang W
Science (2019) 363 [ Pubmed: 30679383 DOI: doi:10.1126/science.aav7003 ]
- Dna (25-mer) (7 kDa, DNA from Enterobacteria phage T7)
- Magnesium ion (24 Da, Ligand)
- Bacteriophage t7 gene product 4 (gp4) helicase primase dna complex iii (Complex from Enterobacteria phage T7)
- Thymidine-5'-triphosphate (482 Da, Ligand)
- Dna primase/helicase (62 kDa, Protein from Enterobacteria phage T7)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6n7v
Q-score: 0.373
Gao Y, Cui Y, Fox T, Lin S, Wang H, de Val N, Zhou ZH, Yang W
Science (2019) 363 [ Pubmed: 30679383 DOI: doi:10.1126/science.aav7003 ]
- Magnesium ion (24 Da, Ligand)
- Dna (93-mer) (23 kDa, DNA from Enterobacteria phage T7)
- Thymidine-5'-triphosphate (482 Da, Ligand)
- E343q mutant gp4 (helicase-primase) complexed with ssdna, dttp, ac dinucleotide and ctp (from gp4-gp5 leading-strand complexes) (Complex from Enterobacteria phage T7)
- Dna primase/helicase (62 kDa, Protein from Enterobacteria phage T7)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6n9u
Q-score: 0.477
Gao Y, Cui Y, Fox T, Lin S, Wang H, de Val N, Zhou ZH, Yang W
Science (2019) 363 [ Pubmed: 30679383 DOI: doi:10.1126/science.aav7003 ]
- Gp5 dna polymerase and two gp4 primase subunits complexed with trx, rna/dna hybrid, and incoming dttp (from gp4-gp5 lagging-strand complex lags1) (Complex from Enterobacteria phage T7)
- Zinc ion (65 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Thymidine-5'-triphosphate (482 Da, Ligand)
- Dna primase/helicase (62 kDa, Protein from Enterobacteria phage T7)
- Rna (5'-r(*ap*cp*cp*ap*g)-d(p*(doc))-3') (1 kDa, RNA from Enterobacteria phage T7)
- Dna-directed dna polymerase (79 kDa, Protein from Enterobacteria phage T7)
- Dna (44-mer) (13 kDa, DNA from Enterobacteria phage T7)
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 6n9v
Q-score: 0.408
Gao Y, Cui Y, Fox T, Lin S, Wang H, de Val N, Zhou ZH, Yang W
Science (2019) 363 [ Pubmed: 30679383 DOI: doi:10.1126/science.aav7003 ]
- Gp5 dna polymerase and two gp4 primase subunits complexed with trx, rna/dna hybrid, and incoming dttp (from gp4-gp5 lagging-strand complex lags1) (Complex from Enterobacteria phage T7)
- Magnesium ion (24 Da, Ligand)
- Dna-directed dna polymerase (79 kDa, Protein from Enterobacteria phage T7)
- Template (13 kDa, DNA from Enterobacteria phage T7)
- Thymidine-5'-triphosphate (482 Da, Ligand)
- Dna primase/helicase (62 kDa, Protein from Enterobacteria phage T7)
- Primer (1 kDa, RNA from Enterobacteria phage T7)
- Zinc ion (65 Da, Ligand)
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 6n9w
Q-score: 0.334
Gao Y, Cui Y, Fox T, Lin S, Wang H, de Val N, Zhou ZH, Yang W
Science (2019) 363 [ Pubmed: 30679383 DOI: doi:10.1126/science.aav7003 ]
- Gp5 dna polymerase binding to a and b subunits of gp4 primase-helicase hexamer complexed with trx, rna/dna hybrid, and incoming dttp (lags2) (Complex from Enterobacteria phage T7)
- Zinc ion (65 Da, Ligand)
- Template (13 kDa, DNA from Enterobacteria phage T7)
- Primer (1 kDa, RNA from Enterobacteria phage T7)
- Dna-directed dna polymerase (79 kDa, Protein from Enterobacteria phage T7)
- Magnesium ion (24 Da, Ligand)
- Dna primase/helicase (62 kDa, Protein from Enterobacteria phage T7)
- Thymidine-5'-triphosphate (482 Da, Ligand)
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 6n9x
Q-score: 0.371
Gao Y, Cui Y, Fox T, Lin S, Wang H, de Val N, Zhou ZH, Yang W
Science (2019) 363 [ Pubmed: 30679383 DOI: doi:10.1126/science.aav7003 ]
- Gp5 dna polymerase binding to b and c subunits of gp4 primase-helicase hexamer complexed with trx, rna/dna hybrid, and incoming dttp (lags3) (Complex from Enterobacteria phage T7)
- Magnesium ion (24 Da, Ligand)
- Dna-directed dna polymerase (79 kDa, Protein from Enterobacteria phage T7)
- Template (13 kDa, DNA from Enterobacteria phage T7)
- Thymidine-5'-triphosphate (482 Da, Ligand)
- Dna primase/helicase (62 kDa, Protein from Enterobacteria phage T7)
- Primer (1 kDa, RNA from Enterobacteria phage T7)
- Zinc ion (65 Da, Ligand)
Cryo-EM structure of bacteriphage T7 replisome
Kulczyk AW, Moeller A, Meyer P, Sliz P, Richardson CC
PNAS (2017) 114 pp. E1848-E1856 [ Pubmed: 28223502 DOI: doi:10.1073/pnas.1701252114 ]