Schizosaccharomyces pombe RNA polymerase I (monomer)
Resolution: 3.84 Å
EM Method: Single-particle
Fitted PDBs: 7aoc
Q-score: 0.449
Heiss FB, Daiss JL, Becker P, Engel C
Nat Commun (2021) 12 pp. 758-758 [ DOI: doi:10.1038/s41467-021-21031-8 Pubmed: 33536435 ]
- Dna-directed rna polymerase i subunit rpa12 (13 kDa, Protein from Schizosaccharomyces pombe (strain 972 / ATCC 24843))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Schizosaccharomyces pombe (strain 972 / ATCC 24843))
- Dna-directed rna polymerases i and iii subunit rpac2 (13 kDa, Protein from Schizosaccharomyces pombe (strain 972 / ATCC 24843))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (15 kDa, Protein from Schizosaccharomyces pombe (strain 972 / ATCC 24843))
- Dna-directed rna polymerases i and iii subunit rpac1 (39 kDa, Protein from Schizosaccharomyces pombe (strain 972 / ATCC 24843))
- Probable dna-directed rna polymerase i subunit rpa2 (131 kDa, Protein from Schizosaccharomyces pombe (strain 972 / ATCC 24843))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (8 kDa, Protein from Schizosaccharomyces pombe (strain 972 / ATCC 24843))
- Dna-directed rna polymerase i subunit rpa43 (19 kDa, Protein from Schizosaccharomyces pombe (strain 972 / ATCC 24843))
- Dna-directed rna polymerase i subunit rpa1 (189 kDa, Protein from Schizosaccharomyces pombe (strain 972 / ATCC 24843))
- S. pombe rna polymerase i (Complex from Schizosaccharomyces pombe (strain 972 / ATCC 24843))
- Dna-directed rna polymerase i subunit rpa14 (17 kDa, Protein from Schizosaccharomyces pombe (strain 972 / ATCC 24843))
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (23 kDa, Protein from Schizosaccharomyces pombe (strain 972 / ATCC 24843))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (14 kDa, Protein from Schizosaccharomyces pombe (strain 972 / ATCC 24843))
Schizosaccharomyces pombe RNA polymerase I (dimer)
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 7aod
Q-score: 0.309
Heiss FB, Daiss JL, Becker P, Engel C
Nat Commun (2021) 12 pp. 758-758 [ Pubmed: 33536435 DOI: doi:10.1038/s41467-021-21031-8 ]
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Schizosaccharomyces pombe (strain 972 / ATCC 24843))
- S. pombe rna polymerase i (Complex from Schizosaccharomyces pombe (strain 972 / ATCC 24843))
- Dna-directed rna polymerase i subunit rpa14 (17 kDa, Protein from Schizosaccharomyces pombe (strain 972 / ATCC 24843))
- Dna-directed rna polymerases i and iii subunit rpac2 (13 kDa, Protein from Schizosaccharomyces pombe (strain 972 / ATCC 24843))
- Dna-directed rna polymerase i subunit rpa1 (189 kDa, Protein from Schizosaccharomyces pombe (strain 972 / ATCC 24843))
- Dna-directed rna polymerase i subunit rpa43 (19 kDa, Protein from Schizosaccharomyces pombe (strain 972 / ATCC 24843))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (8 kDa, Protein from Schizosaccharomyces pombe (strain 972 / ATCC 24843))
- Dna-directed rna polymerase i subunit rpa12 (13 kDa, Protein from Schizosaccharomyces pombe (strain 972 / ATCC 24843))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (15 kDa, Protein from Schizosaccharomyces pombe (strain 972 / ATCC 24843))
- Probable dna-directed rna polymerase i subunit rpa2 (131 kDa, Protein from Schizosaccharomyces pombe (strain 972 / ATCC 24843))
- Dna-directed rna polymerases i and iii subunit rpac1 (39 kDa, Protein from Schizosaccharomyces pombe (strain 972 / ATCC 24843))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (23 kDa, Protein from Schizosaccharomyces pombe (strain 972 / ATCC 24843))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (14 kDa, Protein from Schizosaccharomyces pombe (strain 972 / ATCC 24843))
Schizosaccharomyces pombe RNA polymerase I (elongation complex)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7aoe
Q-score: 0.422
Heiss FB, Daiss JL, Becker P, Engel C
Nat Commun (2021) 12 pp. 758-758 [ DOI: doi:10.1038/s41467-021-21031-8 Pubmed: 33536435 ]
- Dna-directed rna polymerase i subunit rpa12 (13 kDa, Protein from Schizosaccharomyces pombe (strain 972 / ATCC 24843))
- S. pombe rna polymerase i - elongation complex (Complex from Schizosaccharomyces pombe (strain 972 / ATCC 24843))
- Dna-directed rna polymerases i and iii subunit rpac2 (13 kDa, Protein from Schizosaccharomyces pombe (strain 972 / ATCC 24843))
- Dna-directed rna polymerase i subunit rpa43 (19 kDa, Protein from Schizosaccharomyces pombe (strain 972 / ATCC 24843))
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase i subunit rpa14 (17 kDa, Protein from Schizosaccharomyces pombe (strain 972 / ATCC 24843))
- Dna-directed rna polymerases i and iii subunit rpac2 (Complex from Schizosaccharomyces pombe (strain 972 / ATCC 24843))
- Dna-directed rna polymerases i and iii subunit rpac1 (39 kDa, Protein from Schizosaccharomyces pombe (strain 972 / ATCC 24843))
- Probable dna-directed rna polymerase i subunit rpa2 (131 kDa, Protein from Schizosaccharomyces pombe (strain 972 / ATCC 24843))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (8 kDa, Protein from Schizosaccharomyces pombe (strain 972 / ATCC 24843))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (23 kDa, Protein from Schizosaccharomyces pombe (strain 972 / ATCC 24843))
- Dna, rna (Complex from synthetic construct)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Schizosaccharomyces pombe (strain 972 / ATCC 24843))
- Rna (6 kDa, RNA from synthetic construct)
- Non-template dna (12 kDa, DNA from synthetic construct)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (14 kDa, Protein from Schizosaccharomyces pombe (strain 972 / ATCC 24843))
- S. pombe rna polymerase i - elongation complex (Complex)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (15 kDa, Protein from Schizosaccharomyces pombe (strain 972 / ATCC 24843))
- Template dna (11 kDa, DNA from synthetic construct)
- Dna-directed rna polymerase i subunit rpa1 (189 kDa, Protein from Schizosaccharomyces pombe (strain 972 / ATCC 24843))
early intermediate RNA Polymerase I Pre-initiation complex - eiPIC
Resolution: 3.54 Å
EM Method: Single-particle
Fitted PDBs: 6tps
Q-score: 0.47
Nat Commun (2020) 11 pp. 1206-1206 [ DOI: doi:10.1038/s41467-020-15052-y Pubmed: 32139698 ]
- Dna-directed rna polymerase i subunit rpa14 (14 kDa, Protein from Saccharomyces cerevisiae)
- Rna polymerase (Complex from Saccharomyces cerevisiae)
- Early intermediate rna-polymerase i pre-initiation complex - eipic (Complex)
- Dna-directed rna polymerases i and iii subunit rpac2 (16 kDa, Protein from Saccharomyces cerevisiae)
- Transcription initiation factor (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (16 kDa, Protein from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- Dna foreign (3 kDa, DNA from Synthetic construct)
- Dna-directed rna polymerase i subunit rpa34 (26 kDa, Protein from Saccharomyces cerevisiae)
- Rna polymerase i-specific transcription initiation factor rrn6 (73 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rna polymerase i-specific transcription initiation factor rrn3 (72 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i and iii subunit rpac1 (37 kDa, Protein from Saccharomyces cerevisiae)
- Rna polymerase i-specific transcription initiation factor rrn7 (60 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa12 (13 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa43 (36 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa49 (46 kDa, Protein from Saccharomyces cerevisiae)
- Dna (Complex from Synthetic construct)
- Dna-directed rna polymerase i subunit rpa190 (186 kDa, Protein from Saccharomyces cerevisiae)
- Dna foreign (3 kDa, DNA from Synthetic construct)
- Nts-dna (27-mer) (8 kDa, DNA from Synthetic construct)
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (25 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (17 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa135 (135 kDa, Protein from Saccharomyces cerevisiae)
- Rna polymerase i-specific transcription initiation factor rrn11 (59 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (8 kDa, Protein from Saccharomyces cerevisiae)
- Ts-dna (27-mer) (8 kDa, DNA from Synthetic construct)
Cryo-EM structure of RNA polymerase I in complex with Rrn3 and Core Factor (Orientation III)
Resolution: 7.7 Å
EM Method: Single-particle
Fitted PDBs: 5n5y
Q-score: 0.136
Engel C, Gubbey T, Neyer S, Sainsbury S, Oberthuer C, Baejen C, Bernecky C, Cramer P
Cell (2017) 169 pp. 120-131.e22 [ Pubmed: 28340337 DOI: doi:10.1016/j.cell.2017.03.003 ]
- Dna-directed rna polymerase i subunit rpa12 (13 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Baker's yeast)
- Core factor (220 kDa, Complex from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i and iii subunit rpac2 (16 kDa, Protein from Baker's yeast)
- Zinc ion (65 Da, Ligand)
- Rna polymerase i in complex with rrn3 and core factor (Complex)
- Rna polymerase i-specific transcription initiation factor rrn3 (72 kDa, Protein from Saccharomyces cerevisiae)
- Rna polymerase i-specific transcription initiation factor rrn6 (102 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (25 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerase i subunit rpa49 (46 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerase i subunit rpa34 (26 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerase i subunit rpa14 (14 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (8 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (17 kDa, Protein from Baker's yeast)
- Rna polymerase i (590 kDa, Complex from Saccharomyces cerevisiae)
- Rna polymerase i-specific transcription initiation factor rrn7 (60 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (16 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerases i and iii subunit rpac1 (37 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerase i subunit rpa190 (186 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerase i subunit rpa135 (135 kDa, Protein from Baker's yeast)
- Magnesium ion (24 Da, Ligand)
- Sulfate ion (96 Da, Ligand)
- Dna-directed rna polymerase i subunit rpa43 (36 kDa, Protein from Baker's yeast)
- Initiation factor rrn3 (70 kDa, Complex from Saccharomyces cerevisiae)
- Rna polymerase i-specific transcription initiation factor rrn11 (59 kDa, Protein from Saccharomyces cerevisiae)
Resolution: 7.7 Å
EM Method: Single-particle
Fitted PDBs: 5n5z
Q-score: 0.116
Engel C, Gubbey T, Neyer S, Sainsbury S, Oberthuer C, Baejen C, Bernecky C, Cramer P
Cell (2017) 169 pp. 120-131.e22 [ Pubmed: 28340337 DOI: doi:10.1016/j.cell.2017.03.003 ]
- Dna-directed rna polymerase i subunit rpa14 (14 kDa, Protein from Saccharomyces cerevisiae)
- Core factor (220 kDa, Complex from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i and iii subunit rpac2 (16 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (16 kDa, Protein from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- Rna polymerase i in complex with rrn3 and core factor (Complex)
- Rna polymerase i-specific transcription initiation factor rrn3 (72 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa34 (26 kDa, Protein from Saccharomyces cerevisiae)
- Rna polymerase i-specific transcription initiation factor rrn6 (102 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i and iii subunit rpac1 (37 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa12 (13 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa43 (36 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa49 (46 kDa, Protein from Saccharomyces cerevisiae)
- Rna polymerase i (590 kDa, Complex from Saccharomyces cerevisiae)
- Rna polymerase i-specific transcription initiation factor rrn7 (60 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa190 (186 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (25 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (17 kDa, Protein from Saccharomyces cerevisiae)
- Initiation factor rrn3 (70 kDa, Complex from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa135 (135 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (8 kDa, Protein from Saccharomyces cerevisiae)
- Rna polymerase i-specific transcription initiation factor rrn11 (59 kDa, Protein from Saccharomyces cerevisiae)
Cryo-EM structure of RNA polymerase I in complex with Rrn3 and Core Factor (Orientation I)
Resolution: 7.7 Å
EM Method: Single-particle
Fitted PDBs: 5n60
Q-score: 0.102
Engel C, Gubbey T, Neyer S, Sainsbury S, Oberthuer C, Baejen C, Bernecky C, Cramer P
Cell (2017) 169 pp. 120-131.e22 [ Pubmed: 28340337 DOI: doi:10.1016/j.cell.2017.03.003 ]
- Dna-directed rna polymerases i and iii subunit rpac1 (37 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa14 (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Zinc ion (65 Da, Ligand)
- Rna polymerase i in complex with rrn3 and core factor (Complex)
- Rna polymerase i-specific transcription initiation factor rrn3 (72 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rna polymerase i-specific transcription initiation factor rrn7 (60 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa135 (135 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i and iii subunit rpac2 (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rna polymerase i (590 kDa, Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (8 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa12 (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa49 (46 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Core factor (220 kDa, Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rna polymerase i-specific transcription initiation factor rrn6 (102 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Initiation factor rrn3 (70 kDa, Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa190 (186 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa34 (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rna polymerase i-specific transcription initiation factor rrn11 (59 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa43 (36 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
RNA polymerase I initially transcribing complex
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 5n61
Q-score: 0.343
Engel C, Gubbey T, Neyer S, Sainsbury S, Oberthuer C, Baejen C, Bernecky C, Cramer P
Cell (2017) 169 pp. 120-131.e22 [ Pubmed: 28340337 DOI: doi:10.1016/j.cell.2017.03.003 ]
- Non-template dna (12 kDa, DNA from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i and iii subunit rpac1 (37 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa14 (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Template dna (13 kDa, DNA from Saccharomyces cerevisiae)
- Rna polymerase i (590 kDa, Complex from Saccharomyces cerevisiae)
- Rna polymerase i-specific transcription initiation factor rrn11 (59 kDa, Protein from Saccharomyces cerevisiae)
- Initiation factor rrn3 (70 kDa, Complex from Saccharomyces cerevisiae)
- Core factor (220 kDa, Complex from Saccharomyces cerevisiae)
- Rna polymerase i initially transcribing complex (950 kDa, Complex)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa135 (135 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i and iii subunit rpac2 (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Sulfate ion (96 Da, Ligand)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (8 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Product rna (1 kDa, RNA from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa12 (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa49 (46 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rna polymerase i-specific transcription initiation factor rrn3 (72 kDa, Protein from Saccharomyces cerevisiae)
- Rna polymerase i-specific transcription initiation factor rrn7 (60 kDa, Protein from Saccharomyces cerevisiae)
- Rna polymerase i-specific transcription initiation factor rrn6 (102 kDa, Protein from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerase i subunit rpa190 (186 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa34 (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Zinc ion (65 Da, Ligand from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa43 (36 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Initial transcription dna/rna scaffold (60 kDa, Complex from Saccharomyces cerevisiae)
Yeast RNA polymerase I elongation complex at 3.8A
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 5m3f
Q-score: 0.383
Neyer S, Kunz M, Geiss C, Hantsche M, Hodirnau VV, Seybert A, Engel C, Scheffer MP, Cramer P, Frangakis AS
Nature (2016) 540 pp. 607-610 [ DOI: doi:10.1038/nature20561 Pubmed: 27842382 ]
- Dna-directed rna polymerase i subunit rpa34 (26 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa135 (135 kDa, Protein from Saccharomyces cerevisiae )
- Dna-directed rna polymerase i subunit rpa12 (13 kDa, Protein from Saccharomyces cerevisiae )
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase i subunit rpa190 (186 kDa, Protein from Saccharomyces cerevisiae )
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (8 kDa, Protein from Saccharomyces cerevisiae)
- Sulfate ion (96 Da, Ligand)
- Dna-directed rna polymerase i subunit rpa43 (36 kDa, Protein from Saccharomyces cerevisiae )
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (25 kDa, Protein from Saccharomyces cerevisiae )
- Dna-directed rna polymerases i and iii subunit rpac2 (16 kDa, Protein from Saccharomyces cerevisiae)
- Non-template dna (12 kDa, DNA from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Saccharomyces cerevisiae)
- Template dna (11 kDa, DNA from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerases i and iii subunit rpac1 (37 kDa, Protein from Saccharomyces cerevisiae )
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (17 kDa, Protein from Saccharomyces cerevisiae )
- Rna (6 kDa, RNA from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa49 (46 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (16 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase i subunit rpa14 (14 kDa, Protein from Saccharomyces cerevisiae)
- Yeast rna polymerase i elongation complex (590 kDa, Complex from Saccharomyces cerevisiae)
Free monomeric RNA polymerase I at 4.0A resolution
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 5m3m
Q-score: 0.309
Neyer S, Kunz M, Geiss C, Hantsche M, Hodirnau VV, Seybert A, Engel C, Scheffer MP, Cramer P, Frangakis AS
Nature (2016) 540 pp. 607-610 [ DOI: doi:10.1038/nature20561 Pubmed: 27842382 ]
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (8 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i and iii subunit rpac1 (37 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa12 (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa14 (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa190 (186 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa49 (46 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa34 (26 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase i subunit rpa135 (135 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i and iii subunit rpac2 (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase i subunit rpa43 (36 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Sulfate ion (96 Da, Ligand)
- Yeast rna polymerase i elongation complex (590 kDa, Complex from Saccharomyces cerevisiae)