RNA Polymerase II-Spt4/5-nucleosome-FACT structure
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7nky
Q-score: 0.358
Farnung L, Ochmann M, Engeholm M, Cramer P
Nat Struct Mol Biol (2021) 28 pp. 382-387 [ Pubmed: 33846633 DOI: doi:10.1038/s41594-021-00578-6 ]
- Dna (138-mer) (Complex)
- Fact complex subunit pob3 (Complex from Saccharomyces cerevisiae)
- Dna (138-mer) (42 kDa, DNA from synthetic construct)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (16 kDa, Protein from Saccharomyces cerevisiae)
- Complex of rna polymerase ii-spt4/5-fact-nucleosome (Complex)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Dna-directed rna polymerase ii subunit rpb3 (Complex from Saccharomyces cerevisiae)
- Dna-directed rna polymerase ii subunit rpb11 (Complex from Saccharomyces cerevisiae)
- Dna-directed rna polymerase ii subunit rpb3 (35 kDa, Protein from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase ii subunit rpb4 (25 kDa, Protein from Saccharomyces cerevisiae)
- Dna (148-mer) (45 kDa, DNA from synthetic construct)
- Transcription elongation factor spt5 (115 kDa, Protein from Saccharomyces cerevisiae)
- Fact complex subunit spt16 (118 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (Complex from Saccharomyces cerevisiae)
- Dna-directed rna polymerase ii subunit rpb9 (Complex from Saccharomyces cerevisiae)
- Rna (5'-r(p*up*cp*up*up*up*up*ap*up*up*up*up*up*up*cp*up*g)-3') (Complex)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Dna-directed rna polymerase ii subunit rpb7 (19 kDa, Protein from Saccharomyces cerevisiae)
- Histone h2a type 1 (Complex from Xenopus laevis)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (17 kDa, Protein from Saccharomyces cerevisiae)
- Rna (5'-r(p*up*cp*up*up*up*up*ap*up*up*up*up*up*up*cp*up*g)-3') (4 kDa, RNA from synthetic RNA)
- Histone h4 (Complex from Xenopus laevis)
- Dna-directed rna polymerase ii subunit rpb2 (Complex from Saccharomyces cerevisiae)
- Dna-directed rna polymerase ii subunit rpb11 (13 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (Complex from Saccharomyces cerevisiae)
- Dna (148-mer) (Complex)
- Chromatin elongation factor spt4 (11 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (Complex from Saccharomyces cerevisiae)
- Dna-directed rna polymerase ii subunit rpb4 (Complex from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (Complex)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (25 kDa, Protein from Saccharomyces cerevisiae)
- Histone h3.2 (Complex from Xenopus laevis)
- Fact complex subunit pob3 (63 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase ii subunit rpb7 (Complex from Saccharomyces cerevisiae)
- Fact complex subunit spt16 (Complex from Saccharomyces cerevisiae)
- Dna-directed rna polymerase ii subunit rpb9 (14 kDa, Protein from Saccharomyces cerevisiae)
- Transcription elongation factor spt5 (Complex from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (8 kDa, Protein from Saccharomyces cerevisiae)
- Histone h2a type 1 (14 kDa, Protein from Xenopus laevis)
- Histone h2b 1.1 (Complex from Xenopus laevis)
- Dna-directed rna polymerase ii subunit rpb1 (191 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase ii subunit rpb2 (138 kDa, Protein from Saccharomyces cerevisiae)
- Chromatin elongation factor spt4 (Complex from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (Complex from Saccharomyces cerevisiae)
- Dna-directed rna polymerase ii subunit rpb1 (Complex from Saccharomyces cerevisiae)