Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 9bct
Q-score: 0.554
You L, Wang C, Molodtsov V, Kuznedelov K, Miao X, Wenck BR, Ulisse P, Sanders TJ, Marshall CJ, Firlar E, Kaelber JT, Santangelo TJ, Ebright RH
Nature (2024) 635 pp. 229-236 [ DOI: doi:10.1038/s41586-024-07979-9 Pubmed: 39322680 ]
- Dna-directed rna polymerase subunit l (11 kDa, Protein from Thermococcus kodakarensis)
- Template strand dna (11 kDa, DNA from synthetic construct)
- Dna-directed rna polymerase subunit p (5 kDa, Protein from Thermococcus kodakarensis)
- Dna-directed rna polymerase subunit f (14 kDa, Protein from Thermococcus kodakarensis)
- Dna-directed rna polymerase subunit a' (103 kDa, Protein from Thermococcus kodakarensis)
- Dna-directed rna polymerase subunit n (7 kDa, Protein from Thermococcus kodakarensis)
- Dna-directed rna polymerase subunit k (6 kDa, Protein from Thermococcus kodakarensis)
- Dna-directed rna polymerase subunit e (21 kDa, Protein from Thermococcus kodakarensis)
- Ftta-dependent transcription termination complex (556 kDa, Complex from Thermococcus kodakarensis)
- Dna-directed rna polymerase subunit h (9 kDa, Protein from Thermococcus kodakarensis)
- Transcription termination factor ftta (73 kDa, Protein from Thermococcus kodakarensis)
- Non-template strand dna (11 kDa, DNA from synthetic construct)
- Magnesium ion (24 Da, Ligand)
- Rna (13 kDa, RNA from synthetic construct)
- Dna-directed rna polymerase subunit a" (43 kDa, Protein from Thermococcus kodakarensis)
- Zinc ion (65 Da, Ligand)
- Transcription elongation factor spt4 (8 kDa, Protein from Thermococcus kodakarensis)
- Dna-directed rna polymerase subunit b (127 kDa, Protein from Thermococcus kodakarensis)
- Dna-directed rna polymerase subunit d (29 kDa, Protein from Thermococcus kodakarensis)
- Transcription elongation factor spt5 (16 kDa, Protein from Thermococcus kodakarensis)
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 9bcu
Q-score: 0.613
You L, Wang C, Molodtsov V, Kuznedelov K, Miao X, Wenck BR, Ulisse P, Sanders TJ, Marshall CJ, Firlar E, Kaelber JT, Santangelo TJ, Ebright RH
Nature (2024) 635 pp. 229-236 [ DOI: doi:10.1038/s41586-024-07979-9 Pubmed: 39322680 ]
- Dna-directed rna polymerase subunit l (11 kDa, Protein from Thermococcus kodakarensis)
- Template strand dna (11 kDa, DNA from synthetic construct)
- Dna-directed rna polymerase subunit p (5 kDa, Protein from Thermococcus kodakarensis)
- Dna-directed rna polymerase subunit f (14 kDa, Protein from Thermococcus kodakarensis)
- Ftta-dependent transcription termination complex containing 52 nt rna (556 kDa, Complex from Thermococcus kodakarensis)
- Dna-directed rna polymerase subunit a' (103 kDa, Protein from Thermococcus kodakarensis)
- Dna-directed rna polymerase subunit n (7 kDa, Protein from Thermococcus kodakarensis)
- Dna-directed rna polymerase subunit k (6 kDa, Protein from Thermococcus kodakarensis)
- Dna-directed rna polymerase subunit e (21 kDa, Protein from Thermococcus kodakarensis)
- Dna-directed rna polymerase subunit h (9 kDa, Protein from Thermococcus kodakarensis)
- Rna (29-mer) (16 kDa, RNA from synthetic construct)
- Transcription termination factor ftta (73 kDa, Protein from Thermococcus kodakarensis)
- Non-template strand dna (11 kDa, DNA from synthetic construct)
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerase subunit a" (43 kDa, Protein from Thermococcus kodakarensis)
- Zinc ion (65 Da, Ligand)
- Transcription elongation factor spt4 (8 kDa, Protein from Thermococcus kodakarensis)
- Dna-directed rna polymerase subunit b (127 kDa, Protein from Thermococcus kodakarensis)
- Dna-directed rna polymerase subunit d (29 kDa, Protein from Thermococcus kodakarensis)
- Transcription elongation factor spt5 (16 kDa, Protein from Thermococcus kodakarensis)
Cryo-EM structure of the Sulfolobus acidocaldarius RNA polymerase at 2.88 A
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7ok0
Q-score: 0.558
Pilotto S, Fouqueau T, Lukoyanova N, Sheppard C, Lucas-Staat S, Diaz-Santin LM, Matelska D, Prangishvili D, Cheung ACM, Werner F
Nat Commun (2021) 12 pp. 5523-5523 [ DOI: doi:10.1038/s41467-021-25666-5 Pubmed: 34535646 ]
- Fe3-s4 cluster (295 Da, Ligand)
- Dna-directed rna polymerase subunit e (20 kDa, Protein from Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase subunit d (29 kDa, Protein from Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
- Dna-directed rna polymerase subunit h (9 kDa, Protein from Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
- Dna-directed rna polymerase subunit n (7 kDa, Protein from Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
- Dna-directed rna polymerase subunit b (126 kDa, Protein from Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
- Dna-directed rna polymerase subunit k (10 kDa, Protein from Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
- Apo-rna polymerase (404 kDa, Complex)
- Dna-directed rna polymerase subunit a' (99 kDa, Protein from Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerase subunit l (10 kDa, Protein from Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
- Dna-directed rna polymerase subunit p (5 kDa, Protein from Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
- Dna-directed rna polymerase, subunit g (15 kDa, Protein from Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
- Dna-directed rna polymerase, subunit f (13 kDa, Protein from Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
- Dna-directed rna polymerase subunit a'' (44 kDa, Protein from Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
- Conserved protein (12 kDa, Protein from Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
Resolution: 3.27 Å
EM Method: Single-particle
Fitted PDBs: 7oq4
Q-score: 0.524
Pilotto S, Fouqueau T, Lukoyanova N, Sheppard C, Lucas-Staat S, Diaz-Santin LM, Matelska D, Prangishvili D, Cheung ACM, Werner F
Nat Commun (2021) 12 pp. 5523-5523 [ DOI: doi:10.1038/s41467-021-25666-5 Pubmed: 34535646 ]
- Fe3-s4 cluster (295 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase subunit a'' (44 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Dna-directed rna polymerase subunit p (5 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Conserved protein (12 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Dna-directed rna polymerase subunit d (29 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Dna-directed rna polymerase subunit h (9 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Dna-directed rna polymerase subunit l (10 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Dna-directed rna polymerase subunit k (10 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Dna-directed rna polymerase subunit n (7 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Rnap inhibitory protein (17 kDa, Protein from Acidianus two-tailed virus)
- Dna-directed rna polymerase subunit a' (99 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerase subunit e (20 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Dna-directed rna polymerase subunit b (126 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Dna-directed rna polymerase, subunit f (13 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Complex of archaeal rna-polymerase with the atv inhibitory protein rip (421 kDa, Complex)
- Dna-directed rna polymerase, subunit g (15 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
Cryo-EM structure of the cellular negative regulator TFS4 bound to the archaeal RNA polymerase
Resolution: 2.61 Å
EM Method: Single-particle
Fitted PDBs: 7oqy
Q-score: 0.586
Pilotto S, Fouqueau T, Lukoyanova N, Sheppard C, Lucas-Staat S, Diaz-Santin LM, Matelska D, Prangishvili D, Cheung ACM, Werner F
Nat Commun (2021) 12 pp. 5523-5523 [ DOI: doi:10.1038/s41467-021-25666-5 Pubmed: 34535646 ]
- Fe3-s4 cluster (295 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase subunit a'' (44 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Dna-directed rna polymerase subunit p (5 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Dna-directed rna polymerase, subunit m (rpom-2) (10 kDa, Protein from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2))
- Conserved protein (12 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Dna-directed rna polymerase subunit d (29 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Dna-directed rna polymerase subunit h (9 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Dna-directed rna polymerase subunit l (10 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Dna-directed rna polymerase subunit k (10 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Dna-directed rna polymerase subunit n (7 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Dna-directed rna polymerase subunit a' (99 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Magnesium ion (24 Da, Ligand)
- Tfs4 bound to the rna polymerase (414 kDa, Complex from Sulfolobus acidocaldarius DSM 639)
- Dna-directed rna polymerase subunit b (126 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Dna-directed rna polymerase subunit e (20 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Dna-directed rna polymerase, subunit f (13 kDa, Protein from Sulfolobus acidocaldarius DSM 639)
- Dna-directed rna polymerase, subunit g (15 kDa, Protein from Sulfolobus acidocaldarius DSM 639)