EMDB < Search results

EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"DNA_2" AND xref_links:"alphafold" AND author_name:"Georgescu"

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EMDB [4]

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EMD-25872

Download Map 3D View

Cryo-EM 3D map of the S. cerevisiae clamp-clamp loader complex PCNA-RFC bound to two DNA molecules, one at the 5'-recessed end and the other at the 3'-recessed end

Release date: Nov. 16, 2022
Resolution: 3.09 Å
EM Method: Single-particle
Fitted PDBs: 7tfh
Q-score: 0.469

Zheng F, Georgescu R, Yao NY, Li H, O'Donnell ME

eLife (2022) 11 [ DOI: doi:10.7554/eLife.77469 Pubmed: 35829698 ]

Sample:

Magnesium ion (24 Da, Ligand)
Template strand (12 kDa, DNA from synthetic construct)
Replication factor c subunit 3 (38 kDa, Protein from Saccharomyces cerevisiae)
Replication factor c subunit 5 (39 kDa, Protein from Saccharomyces cerevisiae)
Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
Adenosine-5'-diphosphate (427 Da, Ligand)
Proliferating cell nuclear antigen (29 kDa, Protein from Saccharomyces cerevisiae)
Replication factor c subunit 4 (36 kDa, Protein from Saccharomyces cerevisiae)
Primer strand (6 kDa, DNA from synthetic construct)
Rfc-pcna-dna1-dna2 (Complex)
Replication factor c subunit 2 (39 kDa, Protein from Saccharomyces cerevisiae)
Dsdna (Complex from synthetic construct)
Replication factor c subunit 1 (95 kDa, Protein from Saccharomyces cerevisiae)
Proteins (Complex from Saccharomyces cerevisiae)

[Show more]

EMD-25873

Download Map 3D View

Cryo-EM 3D map of the S. cerevisiae clamp-clamp loader complex PCNA-RFC bound to DNA with an open clamp

Release date: Nov. 16, 2022
Resolution: 3.41 Å
EM Method: Single-particle
Fitted PDBs: 7tfi
Q-score: 0.444

Zheng F, Georgescu R, Yao NY, Li H, O'Donnell ME

eLife (2022) 11 [ DOI: doi:10.7554/eLife.77469 Pubmed: 35829698 ]

Sample:

Magnesium ion (24 Da, Ligand)
Template strand (12 kDa, DNA from synthetic construct)
Replication factor c subunit 3 (38 kDa, Protein from Saccharomyces cerevisiae)
Replication factor c subunit 5 (39 kDa, Protein from Saccharomyces cerevisiae)
Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
Adenosine-5'-diphosphate (427 Da, Ligand)
Proliferating cell nuclear antigen (29 kDa, Protein from Saccharomyces cerevisiae)
Replication factor c subunit 4 (36 kDa, Protein from Saccharomyces cerevisiae)
Primer strand (6 kDa, DNA from synthetic construct)
Rfc-pcna-dna1-dna2 (Complex)
Replication factor c subunit 2 (39 kDa, Protein from Saccharomyces cerevisiae)
Dsdna (Complex from synthetic construct)
Replication factor c subunit 1 (95 kDa, Protein from Saccharomyces cerevisiae)
Proteins (Complex from Saccharomyces cerevisiae)

[Show more]

EMD-25875

Download Map 3D View

Cryo-EM 3D map of S. cerevisiae clamp loader RFC bound to two DNA molecules, one at the 5'-recessed end and the other at the 3'-recessed end

Release date: Nov. 16, 2022
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 7tfk
Q-score: 0.39

Zheng F, Georgescu R, Yao NY, Li H, O'Donnell ME

eLife (2022) 11 [ DOI: doi:10.7554/eLife.77469 Pubmed: 35829698 ]

Sample:

Magnesium ion (24 Da, Ligand)
Template strand (12 kDa, DNA from synthetic construct)
Replication factor c subunit 3 (38 kDa, Protein from Saccharomyces cerevisiae)
Replication factor c subunit 5 (39 kDa, Protein from Saccharomyces cerevisiae)
Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
Adenosine-5'-diphosphate (427 Da, Ligand)
Replication factor c subunit 4 (36 kDa, Protein from Saccharomyces cerevisiae)
Primer strand (6 kDa, DNA from synthetic construct)
Rfc-pcna-dna1-dna2 (Complex)
Replication factor c subunit 2 (39 kDa, Protein from Saccharomyces cerevisiae)
Dsdna (Complex from synthetic construct)
Replication factor c subunit 1 (95 kDa, Protein from Saccharomyces cerevisiae)
Proteins (Complex from Saccharomyces cerevisiae)

[Show more]

EMD-25876

Download Map 3D View

Cryo-EM 3D map of S. cerevisiae clamp loader RFC bound to DNA

Release date: Nov. 16, 2022
Resolution: 3.33 Å
EM Method: Single-particle
Fitted PDBs: 7tfl
Q-score: 0.329

Zheng F, Georgescu R, Yao NY, Li H, O'Donnell ME

eLife (2022) 11 [ DOI: doi:10.7554/eLife.77469 Pubmed: 35829698 ]

Sample:

Magnesium ion (24 Da, Ligand)
Template strand (12 kDa, DNA from synthetic construct)
Replication factor c subunit 3 (38 kDa, Protein from Saccharomyces cerevisiae)
Replication factor c subunit 5 (39 kDa, Protein from Saccharomyces cerevisiae)
Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
Adenosine-5'-diphosphate (427 Da, Ligand)
Replication factor c subunit 4 (36 kDa, Protein from Saccharomyces cerevisiae)
Primer strand (6 kDa, DNA from synthetic construct)
Rfc-pcna-dna1-dna2 (Complex)
Replication factor c subunit 2 (39 kDa, Protein from Saccharomyces cerevisiae)
Dsdna (Complex from synthetic construct)
Replication factor c subunit 1 (95 kDa, Protein from Saccharomyces cerevisiae)
Proteins (Complex from Saccharomyces cerevisiae)

[Show more]

Sort by: Download

Showing 1 - 4 of 4. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [4]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Field: