The structure of the Tetrahymena thermophila outer dynein arm on doublet microtubule
Resolution: 8.0 Å
EM Method: Single-particle
Fitted PDBs: 7moq
Q-score: 0.067
Kubo S, Yang SK, Black CS, Dai D, Valente-Paterno M, Gaertig J, Ichikawa M, Bui KH
EMBO Rep (2021) 22 pp. e52911-e52911 [ DOI: doi:10.15252/embr.202152911 Pubmed: 34338432 ]
- Docking complex 1 protein (64 kDa, Protein from Tetrahymena thermophila CU428)
- Dynein-1-alpha heavy chain, flagellar inner arm i1 complex protein, putative (475 kDa, Protein from Tetrahymena thermophila CU428)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Dynein light chain (10 kDa, Protein from Tetrahymena thermophila CU428)
- Dynein light chain (13 kDa, Protein from Tetrahymena thermophila CU428)
- Outer dynein arm complex from tetrahymena thermophila (2 MDa, Cellular component from Tetrahymena thermophila CU428)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Tubulin alpha chain (49 kDa, Protein from Tetrahymena thermophila CU428)
- Tubulin beta chain (49 kDa, Protein from Tetrahymena thermophila CU428)
- Dynein light chain 2a (15 kDa, Protein from Tetrahymena thermophila CU428)
- Dynein light chain roadblock-type 2 protein (18 kDa, Protein from Tetrahymena thermophila CU428)
- Dynein light chain (12 kDa, Protein from Tetrahymena thermophila CU428)
- Flagellar outer dynein arm intermediate protein, putative (77 kDa, Protein from Tetrahymena thermophila CU428)
- Outer dynein arm docking complex protein oda protein (35 kDa, Protein from Tetrahymena thermophila CU428)
- Outer dynein arm docking complex protein oda protein (63 kDa, Protein from Tetrahymena thermophila CU428)
- Outer arm dynein beta heavy chain (530 kDa, Protein from Tetrahymena thermophila CU428)
- Docking complex 1/2 protein (11 kDa, Protein from Tetrahymena thermophila CU428)
- Dynein light chain (12 kDa, Protein from Tetrahymena thermophila CU428)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Dynein light chain (10 kDa, Protein from Tetrahymena thermophila CU428)
- Dynein heavy chain, outer arm protein (534 kDa, Protein from Tetrahymena thermophila CU428)
- Dynein light chain (10 kDa, Protein from Tetrahymena thermophila CU428)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Thioredoxin (12 kDa, Protein from Tetrahymena thermophila CU428)
- Dynein light chain roadblock-type 2 protein (14 kDa, Protein from Tetrahymena thermophila CU428)
- Dynein light chain tctex-type 1 protein (13 kDa, Protein from Tetrahymena thermophila CU428)
- Dynein intermediate chain 2 (77 kDa, Protein from Tetrahymena thermophila CU428)
Outer Dynein Arm-Shulin complex - overall structure (Tetrahymena thermophila)
Resolution: 8.78 Å
EM Method: Single-particle
Fitted PDBs: 6zyw
Q-score: 0.103
Mali GR, Ali FA, Lau CK, Begum F, Boulanger J, Howe JD, Chen ZA, Rappsilber J, Skehel M, Carter AP
Science (2021) 371 pp. 910-916 [ DOI: doi:10.1126/science.abe0526 Pubmed: 33632841 ]
- Outer arm dynein beta heavy chain (530 kDa, Protein from Tetrahymena thermophila SB210)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Tetrahymena thermophila oda dyh4 motor (1 MDa, Complex)
- Dynein light chain roadblock-type 2 protein (14 kDa, Protein from Tetrahymena thermophila SB210)
- Dynein heavy chain, outer arm protein (534 kDa, Protein from Tetrahymena thermophila SB210)
- Flagellar outer dynein arm intermediate protein, putative (77 kDa, Protein from Tetrahymena thermophila SB210)
- Dynein intermediate chain 2 (77 kDa, Protein from Tetrahymena thermophila SB210)
- Dynein light chain (10 kDa, Protein from Tetrahymena thermophila SB210)
- Dynein light chain (12 kDa, Protein from Tetrahymena thermophila SB210)
- Dynein light chain 2a (15 kDa, Protein from Tetrahymena thermophila SB210)
- Dynein-1-alpha heavy chain, flagellar inner arm i1 complex protein, putative (475 kDa, Protein from Tetrahymena thermophila SB210)
- Shulin (Complex from Tetrahymena thermophila (strain SB210))
- Dynein light chain (10 kDa, Protein from Tetrahymena thermophila SB210)
- Tetrahymena thermophila oda dyh4 motor (Complex from Tetrahymena thermophila (strain SB210))
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Dynein light chain (13 kDa, Protein from Tetrahymena thermophila SB210)
- Dynein light chain roadblock-type 2 protein (11 kDa, Protein from Tetrahymena thermophila SB210)
- Dynein light chain (10 kDa, Protein from Tetrahymena thermophila SB210)
- Dynein light chain tctex-type 1 protein (13 kDa, Protein from Tetrahymena thermophila SB210)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Thioredoxin (12 kDa, Protein from Tetrahymena thermophila SB210)
- Dynein light chain (12 kDa, Protein from Tetrahymena thermophila SB210)
- Shulin (139 kDa, Protein from Tetrahymena thermophila SB210)
Cryo-EM structure of yeast cytoplasmic dynein with Walker B mutation at AAA3 in presence of ATP-VO4
Resolution: 10.5 Å
EM Method: Single-particle
Fitted PDBs: 5vlj
Q-score: 0.113
DeSantis ME, Cianfrocco MA, Htet ZM, Tran PT, Reck-Peterson SL, Leschziner AE
Cell (2017) 170 pp. 1197-1208.e12 [ DOI: doi:10.1016/j.cell.2017.08.037 Pubmed: 28886386 ]
Human cytoplasmic dynein-1 bound to dynactin and an N-terminal construct of BICD2
Resolution: 8.7 Å
EM Method: Single-particle
Fitted PDBs: 5nw4
Q-score: 0.113
Zhang K, Foster HE, Rondelet A, Lacey SE, Bahi-Buisson N, Bird AW, Carter AP
Cell (2017) 169 pp. 1303-1314.e18 [ Pubmed: 28602352 DOI: doi:10.1016/j.cell.2017.05.025 ]
- Dynactin shoulder complex (11 kDa, Protein from Sus scrofa)
- Dynein intermediate chain (29 kDa, Protein from Homo sapiens)
- Dynactin shoulder complex (51 kDa, Protein from Sus scrofa)
- Dynein intermediate chain (29 kDa, Protein from Homo sapiens)
- Arp11 (46 kDa, Protein from Sus scrofa)
- Dynactin (5 kDa, Protein from Sus scrofa)
- Dynactin (Complex from Sus scrofa)
- Dynactin (7 kDa, Protein from Sus scrofa)
- Dynein n-terminal dimerization domain (10 kDa, Protein from Homo sapiens)
- Dynein-1 (Complex from Homo sapiens)
- Dynactin shoulder complex (48 kDa, Protein from Sus scrofa)
- Capping protein (actin filament) muscle z-line, alpha 1 (33 kDa, Protein from Sus scrofa)
- Dynein light intermediate chain (25 kDa, Protein from Homo sapiens)
- Dynein heavy chain (75 kDa, Protein from Homo sapiens)
- F-actin capping protein beta subunit variant ii (33 kDa, Protein from Sus scrofa)
- Dynein light intermediate chain (25 kDa, Protein from Homo sapiens)
- Dynactin (3 kDa, Protein from Sus scrofa)
- Dynactin p150 (4 kDa, Protein from Sus scrofa)
- Human cytoplasmic dynein-1 bound to dynactin and an n-terminal construct of bicd2 (2 MDa, Complex)
- Robl (10 kDa, Protein from Homo sapiens)
- Dynactin shoulder complex (14 kDa, Protein from Sus scrofa)
- Dynactin pointed end p62 (20 kDa, Protein from Sus scrofa)
- Bicd2n (23 kDa, Protein from Homo sapiens)
- Bicd2 (Complex from Homo sapiens)
- Dynein heavy chain (78 kDa, Protein from Homo sapiens)
- Dynactin subunit 5 (24 kDa, Protein from Sus scrofa)
- Dynactin 6 (20 kDa, Protein from Sus scrofa)
- Arp1 (42 kDa, Protein from Sus scrofa)
- Dynein n-terminal dimerization domain (10 kDa, Protein from Homo sapiens)
- Dynactin (2 kDa, Protein from Sus scrofa)
- Beta-actin (43 kDa, Protein from Sus scrofa)
- P150 (4 kDa, Protein from Sus scrofa)