Mycobacterial supercomplex malate:quinone oxidoreductase assembly
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9dm1
Q-score: 0.38
Di Trani JM, Yu J, Courbon GM, Lobez Rodriguez AP, Cheung J, Liang Y, Coupland CE, Bueler SA, Cook GM, Brzezinski P, Rubinstein J
To Be Published
- Respiratory complex mqo:ciii2civ2sod2 from mycobacterium smegmatis (Complex from Mycolicibacterium smegmatis MC2 155)
- Heme c (618 Da, Ligand)
- Cytochrome aa3 subunit 2 (35 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Cytochrome bc1 complex cytochrome c subunit (23 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Probable malate:quinone oxidoreductase (54 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Heme-a (852 Da, Ligand)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Cytochrome c oxidase polypeptide 4 (15 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Copper (ii) ion (63 Da, Ligand)
- Conserved transmembrane protein (11 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Lpqe protein (16 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- (2r)-3-(((2-aminoethoxy)(hydroxy)phosphoryl)oxy)-2-(palmitoyloxy)propyl (e)-octadec-9-enoate (717 Da, Ligand)
- Cytochrome c oxidase subunit ctaj (8 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Menaquinone-9 (785 Da, Ligand)
- Palmitic acid (256 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- (2r)-2-(hexadecanoyloxy)-3-{[(s)-hydroxy{[(1r,2r,3r,4r,5r,6s)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9s)-9-methyloctadecanoate (853 Da, Ligand)
- (2s)-1-(hexadecanoyloxy)propan-2-yl (10s)-10-methyloctadecanoate (594 Da, Ligand)
- Cytochrome bc1 complex cytochrome b subunit (59 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Cytochrome c oxidase subunit 1 (63 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Cardiolipin (1 kDa, Ligand)
- Uncharacterized protein msmeg_4692/msmei_4575 (14 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Superoxide dismutase [cu-zn] (21 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Cytochrome bc1 complex rieske iron-sulfur subunit (42 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Cytochrome aa3 subunit 3 (22 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
Respiratory supercomplex (III2-IV2) from Mycobacterium smegmatis
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8ovc
Q-score: 0.598
Riepl D, Gamiz-Hernandez AP, Kovalova T, Krol SM, Mader SL, Sjostrand D, Hogbom M, Brzezinski P, Kaila VRI
Nat Commun (2024) 15 pp. 5276-5276 [ DOI: doi:10.1038/s41467-024-49628-9 Pubmed: 38902248 ]
- Superoxide dismutase [cu-zn] (23 kDa, Protein from Mycolicibacterium smegmatis)
- Cytochrome bc1 complex cytochrome b subunit (61 kDa, Protein from Mycolicibacterium smegmatis)
- Cytochrome c oxidase polypeptide 4 (15 kDa, Protein from Mycolicibacterium smegmatis)
- Lpqe protein (19 kDa, Protein from Mycolicibacterium smegmatis)
- Cytochrome bc1 complex cytochrome c subunit (44 kDa, Protein from Mycolicibacterium smegmatis)
- Heme c (618 Da, Ligand)
- Cytochrome-c oxidase (38 kDa, Protein from Mycolicibacterium smegmatis)
- Co-purified unknown peptide (869 Da, Protein from Mycolicibacterium smegmatis)
- Cytochrome bc1 complex cytochrome c subunit (29 kDa, Protein from Mycolicibacterium smegmatis)
- Acyl-phosphatidyl-myo-inositol dimannoside (acpim2) (1 kDa, Ligand)
- Heme-a (852 Da, Ligand)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Uncharacterized protein msmeg_4692/msmei_4575 (15 kDa, Protein from Mycolicibacterium smegmatis)
- Cytochrome c oxidase subunit 1 (64 kDa, Protein from Mycolicibacterium smegmatis)
- Copper (ii) ion (63 Da, Ligand)
- Transmembrane protein (11 kDa, Protein from Mycolicibacterium smegmatis)
- Water (18 Da, Ligand)
- The respiratory supercomplex (Complex from Mycolicibacterium smegmatis)
- Menaquinone-9 (785 Da, Ligand)
- Probable cytochrome c oxidase subunit 3 (22 kDa, Protein from Mycolicibacterium smegmatis)
- Cytochrome c oxidase subunit (8 kDa, Protein from Mycolicibacterium smegmatis)
- Palmitic acid (256 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- (2r)-2-(hexadecanoyloxy)-3-{[(s)-hydroxy{[(1r,2r,3r,4r,5r,6s)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9s)-9-methyloctadecanoate (853 Da, Ligand)
- (2s)-1-(hexadecanoyloxy)propan-2-yl (10s)-10-methyloctadecanoate (594 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Cardiolipin (1 kDa, Ligand)
- (1r)-2-(dodecanoyloxy)-1-[(phosphonooxy)methyl]ethyl tetradecanoate (564 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Co-purified unknown peptide (2 kDa, Protein from Mycolicibacterium smegmatis)
Cryo-EM structure of immature Zika virus
Majowicz SA, Narayanan A, Moustafa IM, Bator CM, Hafenstein SL, Jose J
Viruses (2023) 1 pp. 4- [ DOI: doi:10.1038/s44298-023-00004-2 ]
- E-protein (Protein from Zika virus)
- Zika virus (Virus from Zika virus)
- Prm-protein (Protein from Zika virus)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8cxg
Q-score: 0.485
Liu W, Zhang XK, Gong DY, Dai XH, Sharma A, Zhang TH, Rey F, Zhou ZH
To Be Published
- C8 scfv heavy chain (13 kDa, Protein from Homo sapiens)
- Zika virus (Virus from Zika virus)
- C8 scfv light chain (12 kDa, Protein from Homo sapiens)
- Ankyrin repeat family a protein 2,envelope e protein (69 kDa, Protein from Zika virus)
- Membrane m protein (379 kDa, Protein from Zika virus)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8cxh
Q-score: 0.535
Liu W, Zhang XK, Gong DY, Dai XH, Sharma A, Zhang TH, Rey F, Zhou ZH
To Be Published
- C10 light chain (11 kDa, Protein from Homo sapiens)
- C10 heavy chain (14 kDa, Protein from Homo sapiens)
- Zika virus (Virus from Zika virus)
- Ankyrin repeat family a protein 2,envelope e protein (69 kDa, Protein from Zika virus)
- Membrane m protein (379 kDa, Protein from Zika virus)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8cxi
Q-score: 0.464
Liu W, Zhang XK, Gong DY, Dai XH, Sharma A, Zhang TH, Rey F, Zhou ZH
To Be Published
- Zika virus (Virus from Zika virus)
- A11 light chain (11 kDa, Protein from Homo sapiens)
- A11 heavy chain (14 kDa, Protein from Homo sapiens)
- Ankyrin repeat family a protein 2,envelope e protein (69 kDa, Protein from Zika virus)
- Membrane m protein (379 kDa, Protein from Zika virus)
Resolution: 5.9 Å
EM Method: Single-particle
Fitted PDBs: 7yar
Q-score: 0.134
Adams C, Carbaugh DL, Shu B, Ng TS, Castillo IN, Bhowmik R, Segovia-Chumbez B, Puhl AC, Graham S, Diehl SA, Lazear HM, Lok SM, de Silva AM, Premkumar L
PLoS Pathog (2023) 19 pp. e1010814-e1010814 [ DOI: doi:10.1371/journal.ppat.1010814 Pubmed: 36626401 ]
- E protein (54 kDa, Protein from Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013)
- Zika virus zikv/h. (Complex from Homo sapiens)
- Heavy chain, light chain (Complex)
- Zika virus zikv/h. sapiens/frenchpolynesia/10087pf/2013 (Complex from Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013)
- Heavy chain (24 kDa, Protein from Homo sapiens)
- Light chain (22 kDa, Protein from Homo sapiens)
- M protein (8 kDa, Protein from Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013)
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 7o3j
Q-score: 0.607
Mace K, Vadakkepat AK, Redzej A, Lukoyanova N, Oomen C, Braun N, Ukleja M, Lu F, Costa TRD, Orlova EV, Baker D, Cong Q, Waksman G
Nature (2022) 607 pp. 191-196 [ Pubmed: 35732732 DOI: doi:10.1038/s41586-022-04859-y ]
- Trwf protein (29 kDa, Protein from Escherichia coli)
- Trwh protein (5 kDa, Protein from Escherichia coli)
- Trwe protein (42 kDa, Protein from Escherichia coli)
- Type iv secretion system complex (2 MDa, Complex from Escherichia coli)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7o3t
Q-score: 0.564
Mace K, Vadakkepat AK, Redzej A, Lukoyanova N, Oomen C, Braun N, Ukleja M, Lu F, Costa TRD, Orlova EV, Baker D, Cong Q, Waksman G
Nature (2022) 607 pp. 191-196 [ Pubmed: 35732732 DOI: doi:10.1038/s41586-022-04859-y ]
- Trwf protein (29 kDa, Protein from Escherichia coli)
- Trwe protein (42 kDa, Protein from Escherichia coli)
- Type iv secretion system complex (2 MDa, Complex from Escherichia coli)
Cryo-EM of the OmcE nanowires from Geobacter sulfurreducens
Resolution: 4.3 Å
EM Method: Helical reconstruction
Fitted PDBs: 7tfs
Q-score: 0.343
Wang F, Mustafa K, Suciu V, Joshi K, Chan CH, Choi S, Su Z, Si D, Hochbaum AI, Egelman EH, Bond DR
Nat Microbiol (2022) 7 pp. 1291-1300 [ DOI: doi:10.1038/s41564-022-01159-z Pubmed: 35798889 ]
- Cytochrome c (23 kDa, Protein from Geobacter sulfurreducens)
- Heme c (618 Da, Ligand)
- Filament of omce protein (Complex from Geobacter sulfurreducens)