Mycobacterial supercomplex malate:quinone oxidoreductase assembly
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9dm1
Q-score: 0.38
Di Trani JM, Yu J, Courbon GM, Lobez Rodriguez AP, Cheung J, Liang Y, Coupland CE, Bueler SA, Cook GM, Brzezinski P, Rubinstein J
To Be Published
- Respiratory complex mqo:ciii2civ2sod2 from mycobacterium smegmatis (Complex from Mycolicibacterium smegmatis MC2 155)
- Heme c (618 Da, Ligand)
- Cytochrome aa3 subunit 2 (35 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Cytochrome bc1 complex cytochrome c subunit (23 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Probable malate:quinone oxidoreductase (54 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Heme-a (852 Da, Ligand)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Cytochrome c oxidase polypeptide 4 (15 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Copper (ii) ion (63 Da, Ligand)
- Conserved transmembrane protein (11 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Lpqe protein (16 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- (2r)-3-(((2-aminoethoxy)(hydroxy)phosphoryl)oxy)-2-(palmitoyloxy)propyl (e)-octadec-9-enoate (717 Da, Ligand)
- Cytochrome c oxidase subunit ctaj (8 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Menaquinone-9 (785 Da, Ligand)
- Palmitic acid (256 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- (2r)-2-(hexadecanoyloxy)-3-{[(s)-hydroxy{[(1r,2r,3r,4r,5r,6s)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9s)-9-methyloctadecanoate (853 Da, Ligand)
- (2s)-1-(hexadecanoyloxy)propan-2-yl (10s)-10-methyloctadecanoate (594 Da, Ligand)
- Cytochrome bc1 complex cytochrome b subunit (59 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Cytochrome c oxidase subunit 1 (63 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Cardiolipin (1 kDa, Ligand)
- Uncharacterized protein msmeg_4692/msmei_4575 (14 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Superoxide dismutase [cu-zn] (21 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Cytochrome bc1 complex rieske iron-sulfur subunit (42 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Cytochrome aa3 subunit 3 (22 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8cxg
Q-score: 0.485
Liu W, Zhang XK, Gong DY, Dai XH, Sharma A, Zhang TH, Rey F, Zhou ZH
To Be Published
- C8 scfv heavy chain (13 kDa, Protein from Homo sapiens)
- Zika virus (Virus from Zika virus)
- C8 scfv light chain (12 kDa, Protein from Homo sapiens)
- Ankyrin repeat family a protein 2,envelope e protein (69 kDa, Protein from Zika virus)
- Membrane m protein (379 kDa, Protein from Zika virus)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8cxh
Q-score: 0.535
Liu W, Zhang XK, Gong DY, Dai XH, Sharma A, Zhang TH, Rey F, Zhou ZH
To Be Published
- C10 light chain (11 kDa, Protein from Homo sapiens)
- C10 heavy chain (14 kDa, Protein from Homo sapiens)
- Zika virus (Virus from Zika virus)
- Ankyrin repeat family a protein 2,envelope e protein (69 kDa, Protein from Zika virus)
- Membrane m protein (379 kDa, Protein from Zika virus)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8cxi
Q-score: 0.464
Liu W, Zhang XK, Gong DY, Dai XH, Sharma A, Zhang TH, Rey F, Zhou ZH
To Be Published
- Zika virus (Virus from Zika virus)
- A11 light chain (11 kDa, Protein from Homo sapiens)
- A11 heavy chain (14 kDa, Protein from Homo sapiens)
- Ankyrin repeat family a protein 2,envelope e protein (69 kDa, Protein from Zika virus)
- Membrane m protein (379 kDa, Protein from Zika virus)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7o3t
Q-score: 0.564
Mace K, Vadakkepat AK, Redzej A, Lukoyanova N, Oomen C, Braun N, Ukleja M, Lu F, Costa TRD, Orlova EV, Baker D, Cong Q, Waksman G
Nature (2022) 607 pp. 191-196 [ Pubmed: 35732732 DOI: doi:10.1038/s41586-022-04859-y ]
- Trwf protein (29 kDa, Protein from Escherichia coli)
- Trwe protein (42 kDa, Protein from Escherichia coli)
- Type iv secretion system complex (2 MDa, Complex from Escherichia coli)
Legionella pneumophila Dot/Icm T4SS C1 Reconstruction
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7muc
Q-score: 0.393
Sheedlo MJ, Durie CL, Chung JM, Chang L, Roberts J, Swanson M, Lacy DB, Ohi MD
eLife (2021) 10 [ Pubmed: 34519271 DOI: doi:10.7554/eLife.70427 ]
- Dotc (34 kDa, Protein from Legionella pneumophila)
- Duf2807 domain-containing protein (36 kDa, Protein from Legionella pneumophila)
- Dotf (29 kDa, Protein from Legionella pneumophila)
- Unknown protein fragment (4 kDa, Protein from Legionella pneumophila)
- Dotd (17 kDa, Protein from Legionella pneumophila)
- Unknown protein fragment (783 Da, Protein from Legionella pneumophila)
- Type iv secretion protein icmk (38 kDa, Protein from Legionella pneumophila)
- Outer membrane protein, ompa family protein (27 kDa, Protein from Legionella pneumophila)
- Neurogenic locus notch (13 kDa, Protein from Legionella pneumophila)
- Icme protein (107 kDa, Protein from Legionella pneumophila)
- Legionella pneumophila dot/icm t4ss c1 (Complex from Legionella pneumophila)
- Inner membrane lipoprotein yiad (21 kDa, Protein from Legionella pneumophila)
Structure of the human Fanconi anaemia Core complex
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7kzp
Q-score: 0.437
Wang S, Wang R, Peralta C, Yaseen A, Pavletich NP
Nat Struct Mol Biol (2021) 28 pp. 300-309 [ DOI: doi:10.1038/s41594-021-00568-8 Pubmed: 33686268 ]
- Fanconi anemia group c protein (66 kDa, Protein from Homo sapiens)
- Fanconi anemia group b protein (100 kDa, Protein from Homo sapiens)
- E3 ubiquitin-protein ligase fancl (45 kDa, Protein from Homo sapiens)
- Fanconi anemia group f protein (45 kDa, Protein from Homo sapiens)
- Fanconi anemia group a protein (165 kDa, Protein from Homo sapiens)
- Human fanconi anaemia core complex (1 MDa, Complex from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Fanconi anemia core complex-associated protein 20 (4 kDa, Protein from Homo sapiens)
- Fanconi anemia group g protein (70 kDa, Protein from Homo sapiens)
- Fanconi anemia group e protein (61 kDa, Protein from Homo sapiens)
- Fanconi anemia core complex-associated protein 100 (96 kDa, Protein from Homo sapiens)
Respiratory Complex CIII2CIV2SOD2 from Mycobacterium smegmatis
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6adq
Q-score: 0.458
Gong H, Li J, Xu A, Tang Y, Ji W, Gao R, Wang S, Yu L, Tian C, Li J, Yen HY, Man Lam S, Shui G, Yang X, Sun Y, Li X, Jia M, Yang C, Jiang B, Lou Z, Robinson CV, Wong LL, Guddat LW, Sun F, Wang Q, Rao Z
Science (2018) 362 [ Pubmed: 30361386 DOI: doi:10.1126/science.aat8923 ]
- Cytochrome bc1 complex cytochrome c subunit (30 kDa, Protein from Mycobacterium smegmatis MC2 51)
- Cytochrome c oxidase subunit 2 (38 kDa, Protein from Mycobacterium smegmatis MC2 51)
- Cytochrome c oxidase subunit ctaj (8 kDa, Protein from Mycobacterium smegmatis MC2 51)
- Heme-a (852 Da, Ligand)
- Prokaryotic respiratory supercomplex associate factor 1 prsaf1 (11 kDa, Protein from Mycobacterium smegmatis MC2 51)
- (2s)-1-(hexadecanoyloxy)propan-2-yl (10s)-10-methyloctadecanoate (594 Da, Ligand)
- Copper (ii) ion (63 Da, Ligand)
- Cardiolipin (1 kDa, Ligand)
- Rieske iron-sulfur protein qcra (46 kDa, Protein from Mycobacterium smegmatis MC2 51)
- Cytochrome c oxidase polypeptide 4 (15 kDa, Protein from Mycobacterium smegmatis MC2 51)
- Ubiquinol-cytochrome c reductase cytochrome b subunit (60 kDa, Protein from Mycobacterium smegmatis MC2 51)
- Uncharacterized protein msmeg_4692/msmei_4575 (15 kDa, Protein from Mycobacterium smegmatis MC2 51)
- (2r)-3-(((2-aminoethoxy)(hydroxy)phosphoryl)oxy)-2-(palmitoyloxy)propyl (e)-octadec-9-enoate (717 Da, Ligand)
- Menaquinone-9 (785 Da, Ligand)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Palmitic acid (256 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Lpqe protein (19 kDa, Protein from Mycobacterium smegmatis MC2 51)
- (2r)-2-(hexadecanoyloxy)-3-{[(s)-hydroxy{[(1r,2r,3r,4r,5r,6s)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9s)-9-methyloctadecanoate (853 Da, Ligand)
- Superoxide dismutase in complex with bcc-aa3 type ciii-civ supercomplex from mycobacterium smegmatis (800 kDa, Complex from Mycobacterium smegmatis MC2 51)
- Heme c (618 Da, Ligand)
- Superoxide dismutase [cu-zn] (23 kDa, Protein from Mycobacterium smegmatis MC2 51)
- Cytochrome c oxidase subunit 1 (64 kDa, Protein from Mycobacterium smegmatis MC2 51)
- Cytochrome c oxidase subunit 3 (22 kDa, Protein from Mycobacterium smegmatis MC2 51)
Structure of Zika virus at a resolution of 3.1 Angstrom
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6co8
Q-score: 0.507
Sevvana M, Long F, Miller AS, Klose T, Buda G, Sun L, Kuhn RJ, Rossmann MG
Structure (2018) 26 pp. 1169- [ DOI: doi:10.1016/j.str.2018.05.006 Pubmed: 29958768 ]
- Zika virus zikv/h. sapiens/frenchpolynesia/10087pf/2013 (Virus from Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013)
- M protein (8 kDa, Protein from Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013)
- E protein (54 kDa, Protein from Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013)
The cryo-EM structure of Zika Virus
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 5ire
Q-score: 0.425
Sirohi D, Chen Z, Sun L, Klose T, Pierson TC, Rossmann MG, Kuhn RJ
Science (2016) 352 pp. 467-470 [ Pubmed: 27033547 DOI: doi:10.1126/science.aaf5316 ]
- M protein (8 kDa, Protein from Zika virus)
- E protein (54 kDa, Protein from Zika virus)
- Zika virus (Virus from Zika virus)